RNA–Protein interactions for RNA: ENST00000582352.1

SHMT1-208, Transcript of serine hydroxymethyltransferase 1, humanhuman

Gene SHMT1, Length 2,756 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-208ENST00000582352 SNAI2O43623 268 aa9.65□□□□□ -0.86
SHMT1-208ENST00000582352 IL4P05112 153 aa9.65□□□□□ -0.86
SHMT1-208ENST00000582352 IFI27P40305 119 aaPredicted RBP9.65□□□□□ -0.86
SHMT1-208ENST00000582352 IGF2-ASQ6U949 168 aa9.65□□□□□ -0.86
SHMT1-208ENST00000582352 RNF125Q96EQ8 232 aa9.65□□□□□ -0.86
SHMT1-208ENST00000582352 DCHS1Q96JQ0 3298 aa9.64□□□□□ -0.87
SHMT1-208ENST00000582352 C7orf71A4D174 169 aa9.64□□□□□ -0.87
SHMT1-208ENST00000582352 D6R8Y8 96 aa9.64□□□□□ -0.87
SHMT1-208ENST00000582352 PPBPP02775 128 aa9.64□□□□□ -0.87
SHMT1-208ENST00000582352 SEC11AP67812 179 aa9.64□□□□□ -0.87
SHMT1-208ENST00000582352 NHLH1Q02575 133 aa9.64□□□□□ -0.87
SHMT1-208ENST00000582352 OCIAD2Q56VL3 154 aa9.64□□□□□ -0.87
SHMT1-208ENST00000582352 VPS25Q9BRG1 176 aa9.64□□□□□ -0.87
SHMT1-208ENST00000582352 AAMDCQ9H7C9 122 aa9.64□□□□□ -0.87
SHMT1-208ENST00000582352 LAMA5O15230 3695 aa9.64□□□□□ -0.87
SHMT1-208ENST00000582352 LOC389332A0A1B0GUA5 103 aa9.64□□□□□ -0.87
SHMT1-208ENST00000582352 K7EIM0 57 aa9.64□□□□□ -0.87
SHMT1-208ENST00000582352 M0R3E3 92 aa9.64□□□□□ -0.87
SHMT1-208ENST00000582352 ANKRD39Q53RE8 183 aa9.64□□□□□ -0.87
SHMT1-208ENST00000582352 SRSF8Q9BRL6 282 aaKnown RBP9.64□□□□□ -0.87
SHMT1-208ENST00000582352 CRIP1P50238 77 aa9.63□□□□□ -0.87
SHMT1-208ENST00000582352 ZNF493Q6ZR52 646 aa9.63□□□□□ -0.87
SHMT1-208ENST00000582352 C8orf49Q96NF6 230 aa9.63□□□□□ -0.87
SHMT1-208ENST00000582352 MGAQ8IWI9 3026 aa9.63□□□□□ -0.87
SHMT1-208ENST00000582352 TMSB15BA0A087X1C1 80 aa9.63□□□□□ -0.87
SHMT1-208ENST00000582352 TRAV8-6A0A0B4J262 113 aa9.63□□□□□ -0.87
SHMT1-208ENST00000582352 FCGR2BP31994 310 aaPredicted RBP9.63□□□□□ -0.87
SHMT1-208ENST00000582352 TMEM97Q5BJF2 176 aa9.63□□□□□ -0.87
SHMT1-208ENST00000582352 S100A7AQ86SG5 101 aa9.63□□□□□ -0.87
SHMT1-208ENST00000582352 ORMDL3Q8N138 153 aa9.63□□□□□ -0.87
SHMT1-208ENST00000582352 ZNF491Q8N8L2 437 aa9.63□□□□□ -0.87
SHMT1-208ENST00000582352 SIGLEC8Q9NYZ4 499 aa9.63□□□□□ -0.87
SHMT1-208ENST00000582352 OTOGLQ3ZCN5 2332 aa9.63□□□□□ -0.87
SHMT1-208ENST00000582352 PCNX1Q96RV3 2341 aa9.63□□□□□ -0.87
SHMT1-208ENST00000582352 TMEM189A5PLL7 270 aa9.63□□□□□ -0.87
SHMT1-208ENST00000582352 FAM106CPP0CH98 169 aa9.63□□□□□ -0.87
SHMT1-208ENST00000582352 FAM106AQ4KMX7 169 aa9.63□□□□□ -0.87
SHMT1-208ENST00000582352 LYZL1Q6UWQ5 148 aa9.63□□□□□ -0.87
SHMT1-208ENST00000582352 DPF1Q92782 380 aa9.63□□□□□ -0.87
SHMT1-208ENST00000582352 ZNF414Q96IQ9 312 aa9.63□□□□□ -0.87
SHMT1-208ENST00000582352 PRELID3AQ96N28 172 aa9.63□□□□□ -0.87
SHMT1-208ENST00000582352 ADGRG4Q8IZF6 3080 aa9.62□□□□□ -0.87
SHMT1-208ENST00000582352 LOXL1Q08397 574 aaPredicted RBP9.62□□□□□ -0.87
SHMT1-208ENST00000582352 ZGRF1Q86YA3 2104 aa9.62□□□□□ -0.87
SHMT1-208ENST00000582352 RNF5Q99942 180 aa9.62□□□□□ -0.87
SHMT1-208ENST00000582352 A0A096LNJ9 63 aa9.62□□□□□ -0.87
SHMT1-208ENST00000582352 GAGE12BA1L429 117 aa9.62□□□□□ -0.87
SHMT1-208ENST00000582352 TMEM213A2RRL7 107 aa9.62□□□□□ -0.87
SHMT1-208ENST00000582352 E7EQL1 145 aa9.62□□□□□ -0.87
SHMT1-208ENST00000582352 APOBEC3AP31941 199 aaPredicted RBP9.62□□□□□ -0.87
SHMT1-208ENST00000582352 PDE6HQ13956 83 aa9.62□□□□□ -0.87
SHMT1-208ENST00000582352 AMN1Q8IY45 258 aa9.62□□□□□ -0.87
SHMT1-208ENST00000582352 AP1S3Q96PC3 154 aa9.62□□□□□ -0.87
SHMT1-208ENST00000582352 DMXL2Q8TDJ6 3036 aa9.62□□□□□ -0.87
SHMT1-208ENST00000582352 KALRNO60229 2985 aa9.61□□□□□ -0.87
SHMT1-208ENST00000582352 PPIAL4CA0A0B4J2A2 164 aa9.61□□□□□ -0.87
SHMT1-208ENST00000582352 SHISA9B4DS77 424 aa9.61□□□□□ -0.87
SHMT1-208ENST00000582352 GNG7O60262 68 aa9.61□□□□□ -0.87
SHMT1-208ENST00000582352 PPIAL4GP0DN37 164 aa9.61□□□□□ -0.87
SHMT1-208ENST00000582352 UQCRFS1P47985 274 aa9.61□□□□□ -0.87
SHMT1-208ENST00000582352 LGALS9BQ3B8N2 356 aa9.61□□□□□ -0.87
SHMT1-208ENST00000582352 FAM104BQ5XKR9 115 aa9.61□□□□□ -0.87
SHMT1-208ENST00000582352 LGALS9CQ6DKI2 356 aa9.61□□□□□ -0.87
SHMT1-208ENST00000582352 ARL6IP6Q8N6S5 226 aa9.61□□□□□ -0.87
SHMT1-208ENST00000582352 OR1N2Q8NGR9 330 aa9.61□□□□□ -0.87
SHMT1-208ENST00000582352 RAB1BQ9H0U4 201 aa9.61□□□□□ -0.87
SHMT1-208ENST00000582352 ZZEF1O43149 2961 aa9.61□□□□□ -0.87
SHMT1-208ENST00000582352 A6NDN8 102 aa9.61□□□□□ -0.87
SHMT1-208ENST00000582352 TIMM23O14925 209 aa9.61□□□□□ -0.87
SHMT1-208ENST00000582352 MRPS12O15235 138 aaKnown RBP9.61□□□□□ -0.87
SHMT1-208ENST00000582352 KLK10O43240 276 aa9.61□□□□□ -0.87
SHMT1-208ENST00000582352 HBDP02042 147 aa9.61□□□□□ -0.87
SHMT1-208ENST00000582352 FGF6P10767 208 aa9.61□□□□□ -0.87
SHMT1-208ENST00000582352 CACNG7P62955 275 aa9.61□□□□□ -0.87
SHMT1-208ENST00000582352 FOXE3Q13461 319 aa9.61□□□□□ -0.87
SHMT1-208ENST00000582352 RABAC1Q9UI14 185 aa9.61□□□□□ -0.87
SHMT1-208ENST00000582352 DMXL1Q9Y485 3027 aa9.61□□□□□ -0.87
SHMT1-208ENST00000582352 U3KQK5 164 aa9.61□□□□□ -0.87
SHMT1-208ENST00000582352 K7ERU9 68 aa9.6□□□□□ -0.87
SHMT1-208ENST00000582352 SH2D1AO60880 128 aa9.6□□□□□ -0.87
SHMT1-208ENST00000582352 SMIM15Q7Z3B0 74 aa9.6□□□□□ -0.87
SHMT1-208ENST00000582352 S4R3C0 116 aa9.6□□□□□ -0.87
SHMT1-208ENST00000582352 TPRP12270 2363 aaKnown RBP9.6□□□□□ -0.87
SHMT1-208ENST00000582352 GAGE10A6NGK3 116 aa9.6□□□□□ -0.87
SHMT1-208ENST00000582352 ONECUT1Q9UBC0 465 aa9.6□□□□□ -0.87
SHMT1-208ENST00000582352 WI2-2373I1.2A0A1W2PRP0 233 aa9.59□□□□□ -0.87
SHMT1-208ENST00000582352 NBR2O15453 112 aa9.59□□□□□ -0.87
SHMT1-208ENST00000582352 TCTAP57738 103 aa9.59□□□□□ -0.87
SHMT1-208ENST00000582352 JKAMPQ9P055 326 aa9.59□□□□□ -0.87
SHMT1-208ENST00000582352 LYNX1G3V0Z9 82 aa9.59□□□□□ -0.87
SHMT1-208ENST00000582352 SMAD7O15105 426 aaKnown RBP9.59□□□□□ -0.87
SHMT1-208ENST00000582352 LYNX1P0DP58 116 aa9.59□□□□□ -0.87
SHMT1-208ENST00000582352 MRPL51Q4U2R6 128 aaKnown RBP9.59□□□□□ -0.87
SHMT1-208ENST00000582352 KLF17Q5JT82 389 aaPredicted RBP9.59□□□□□ -0.87
SHMT1-208ENST00000582352 GTF2H5Q6ZYL4 71 aa9.59□□□□□ -0.87
SHMT1-208ENST00000582352 CKS2P33552 79 aa9.58□□□□□ -0.88
SHMT1-208ENST00000582352 FXYD7P58549 80 aa9.58□□□□□ -0.88
SHMT1-208ENST00000582352 GFRALQ6UXV0 394 aa9.58□□□□□ -0.88
SHMT1-208ENST00000582352 BOD1L2Q8IYS8 172 aa9.58□□□□□ -0.88
SHMT1-208ENST00000582352 PIP4P2Q8N4L2 257 aa9.58□□□□□ -0.88
Retrieved 100 of 20,778 RNA–protein pairs in 28.7 ms