RNA–Protein interactions for RNA: ENST00000582092.1

SS18-220, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 1 (best)

Gene SS18, Length 215 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-220ENST00000582092 FOXL1Q12952 345 aa7.21□□□□□ -1.26
SS18-220ENST00000582092 PDE6HQ13956 83 aa7.21□□□□□ -1.26
SS18-220ENST00000582092 USF2Q15853 346 aaPredicted RBP7.21□□□□□ -1.26
SS18-220ENST00000582092 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP7.21□□□□□ -1.26
SS18-220ENST00000582092 OR4X2Q8NGF9 303 aa7.21□□□□□ -1.26
SS18-220ENST00000582092 IMMP2LQ96T52 175 aa7.21□□□□□ -1.26
SS18-220ENST00000582092 ZNF586Q9NXT0 402 aa7.21□□□□□ -1.26
SS18-220ENST00000582092 TRBV19A0A075B6N1 114 aa7.2□□□□□ -1.26
SS18-220ENST00000582092 A0A1W2PS18 150 aa7.2□□□□□ -1.26
SS18-220ENST00000582092 ZNF320A2RRD8 509 aa7.2□□□□□ -1.26
SS18-220ENST00000582092 PGPEP1LA6NFU8 196 aa7.2□□□□□ -1.26
SS18-220ENST00000582092 PPP5D1E7EU14 171 aa7.2□□□□□ -1.26
SS18-220ENST00000582092 F8W735 103 aaPredicted RBP7.2□□□□□ -1.26
SS18-220ENST00000582092 GGCTO75223 188 aaKnown RBP7.2□□□□□ -1.26
SS18-220ENST00000582092 IGHV3-11P01762 117 aa7.2□□□□□ -1.26
SS18-220ENST00000582092 FOLR2P14207 255 aa7.2□□□□□ -1.26
SS18-220ENST00000582092 BMI1P35226 326 aa7.2□□□□□ -1.26
SS18-220ENST00000582092 ADMP35318 185 aa7.2□□□□□ -1.26
SS18-220ENST00000582092 MEOX2P50222 304 aa7.2□□□□□ -1.26
SS18-220ENST00000582092 GNG5P63218 68 aa7.2□□□□□ -1.26
SS18-220ENST00000582092 ELOBQ15370 118 aa7.2□□□□□ -1.26
SS18-220ENST00000582092 TMEM183BQ1AE95 376 aa7.2□□□□□ -1.26
SS18-220ENST00000582092 RPEL1Q2QD12 228 aa7.2□□□□□ -1.26
SS18-220ENST00000582092 FAM106AQ4KMX7 169 aa7.2□□□□□ -1.26
SS18-220ENST00000582092 C1orf194Q5T5A4 169 aa7.2□□□□□ -1.26
SS18-220ENST00000582092 TEX38Q6PEX7 206 aa7.2□□□□□ -1.26
SS18-220ENST00000582092 C3orf56Q8N813 242 aa7.2□□□□□ -1.26
SS18-220ENST00000582092 C2CD4CQ8TF44 421 aa7.2□□□□□ -1.26
SS18-220ENST00000582092 ZNF580Q9UK33 172 aa7.2□□□□□ -1.26
SS18-220ENST00000582092 IGHV3OR16-8A0A075B7F1 116 aa7.19□□□□□ -1.26
SS18-220ENST00000582092 RBM14-RBM4A0A0A0MSL8 147 aaKnown RBP7.19□□□□□ -1.26
SS18-220ENST00000582092 TGIF2-C20orf24A0A0A6YYL0 155 aa7.19□□□□□ -1.26
SS18-220ENST00000582092 TRAV34A0A0B4J273 112 aa7.19□□□□□ -1.26
SS18-220ENST00000582092 SERTM2A0A1B0GWG4 89 aa7.19□□□□□ -1.26
SS18-220ENST00000582092 A0A1W2PPQ1 181 aa7.19□□□□□ -1.26
SS18-220ENST00000582092 DNAJC9-AS1A6NH13 148 aa7.19□□□□□ -1.26
SS18-220ENST00000582092 ZNF705GA8MUZ8 300 aaPredicted RBP7.19□□□□□ -1.26
SS18-220ENST00000582092 NDUFA4O00483 81 aa7.19□□□□□ -1.26
SS18-220ENST00000582092 GATCO43716 136 aaKnown RBP7.19□□□□□ -1.26
SS18-220ENST00000582092 TCRAP04437 139 aa7.19□□□□□ -1.26
SS18-220ENST00000582092 PPIFP30405 207 aaKnown RBP7.19□□□□□ -1.26
SS18-220ENST00000582092 C19orf54Q5BKX5 351 aa7.19□□□□□ -1.26
SS18-220ENST00000582092 ZNF343Q6P1L6 599 aa7.19□□□□□ -1.26
SS18-220ENST00000582092 EXOC3-AS1Q8N2X6 119 aa7.19□□□□□ -1.26
SS18-220ENST00000582092 TMEM86BQ8N661 226 aa7.19□□□□□ -1.26
SS18-220ENST00000582092 SMIM12Q96EX1 92 aa7.19□□□□□ -1.26
SS18-220ENST00000582092 ZNF414Q96IQ9 312 aa7.19□□□□□ -1.26
SS18-220ENST00000582092 CCDC140Q96MF4 163 aa7.19□□□□□ -1.26
SS18-220ENST00000582092 OSTCQ9NRP0 149 aa7.19□□□□□ -1.26
SS18-220ENST00000582092 PEF1Q9UBV8 284 aaKnown RBP7.19□□□□□ -1.26
SS18-220ENST00000582092 TRBV24-1A0A075B6N3 115 aa7.18□□□□□ -1.26
SS18-220ENST00000582092 FBLL1A6NHQ2 334 aaKnown RBP7.18□□□□□ -1.26
SS18-220ENST00000582092 ZNF207O43670 478 aaKnown RBP7.18□□□□□ -1.26
SS18-220ENST00000582092 GCGP01275 180 aa7.18□□□□□ -1.26
SS18-220ENST00000582092 IGLV1-40P01703 118 aa7.18□□□□□ -1.26
SS18-220ENST00000582092 RNASE1P07998 156 aaKnown RBP7.18□□□□□ -1.26
SS18-220ENST00000582092 IGLC2P0DOY2 106 aa7.18□□□□□ -1.26
SS18-220ENST00000582092 RPL15P61313 204 aaKnown RBP7.18□□□□□ -1.26
SS18-220ENST00000582092 RPL11P62913 178 aaKnown RBP7.18□□□□□ -1.26
SS18-220ENST00000582092 OR5I1Q13606 314 aa7.18□□□□□ -1.26
SS18-220ENST00000582092 IBA57Q5T440 356 aaKnown RBP7.18□□□□□ -1.26
SS18-220ENST00000582092 PRR27Q6MZM9 219 aa7.18□□□□□ -1.26
SS18-220ENST00000582092 GOLT1AQ6ZVE7 132 aa7.18□□□□□ -1.26
SS18-220ENST00000582092 PRNTQ86SH4 94 aa7.18□□□□□ -1.26
SS18-220ENST00000582092 ZFP82Q8N141 532 aa7.18□□□□□ -1.26
SS18-220ENST00000582092 SLC50A1Q9BRV3 221 aa7.18□□□□□ -1.26
SS18-220ENST00000582092 IL36BQ9NZH7 164 aa7.18□□□□□ -1.26
SS18-220ENST00000582092 FBN1P35555 2871 aaKnown RBP7.18□□□□□ -1.26
SS18-220ENST00000582092 TRAV9-1A0A075B6T8 112 aa7.17□□□□□ -1.26
SS18-220ENST00000582092 A0A1B0GUS0 222 aa7.17□□□□□ -1.26
SS18-220ENST00000582092 ISLRO14498 428 aa7.17□□□□□ -1.26
SS18-220ENST00000582092 ZNF253O75346 499 aa7.17□□□□□ -1.26
SS18-220ENST00000582092 IGHG4P01861 327 aa7.17□□□□□ -1.26
SS18-220ENST00000582092 ELANEP08246 267 aa7.17□□□□□ -1.26
SS18-220ENST00000582092 CXCL1P09341 107 aa7.17□□□□□ -1.26
SS18-220ENST00000582092 CT45A10P0DMU9 189 aa7.17□□□□□ -1.26
SS18-220ENST00000582092 MYCNOSP40205 109 aa7.17□□□□□ -1.26
SS18-220ENST00000582092 FAM3BP58499 235 aaPredicted RBP7.17□□□□□ -1.26
SS18-220ENST00000582092 FOXE3Q13461 319 aa7.17□□□□□ -1.26
SS18-220ENST00000582092 Q6ZS46 218 aa7.17□□□□□ -1.26
SS18-220ENST00000582092 NHLRC2Q8NBF2 726 aa7.17□□□□□ -1.26
SS18-220ENST00000582092 SGK494Q96LW2 274 aa7.17□□□□□ -1.26
SS18-220ENST00000582092 LINC00479Q96M42 142 aa7.17□□□□□ -1.26
SS18-220ENST00000582092 DUX5Q96PT3 197 aa7.17□□□□□ -1.26
SS18-220ENST00000582092 NDFIP1Q9BT67 221 aa7.17□□□□□ -1.26
SS18-220ENST00000582092 KLK15Q9H2R5 256 aa7.17□□□□□ -1.26
SS18-220ENST00000582092 PRDM13Q9H4Q3 707 aa7.17□□□□□ -1.26
SS18-220ENST00000582092 ZFAND3Q9H8U3 227 aa7.17□□□□□ -1.26
SS18-220ENST00000582092 ESM1Q9NQ30 184 aa7.17□□□□□ -1.26
SS18-220ENST00000582092 CLEC5AQ9NY25 188 aa7.17□□□□□ -1.26
SS18-220ENST00000582092 ZFP30Q9Y2G7 519 aa7.17□□□□□ -1.26
SS18-220ENST00000582092 ANK3Q12955 4377 aaKnown RBP7.16□□□□□ -1.26
SS18-220ENST00000582092 TRBV20OR9-2A0A075B6H5 130 aa7.16□□□□□ -1.26
SS18-220ENST00000582092 IGHV3OR16-13A0A075B7E8 117 aa7.16□□□□□ -1.26
SS18-220ENST00000582092 IGHV3-49A0A0A0MS15 119 aa7.16□□□□□ -1.26
SS18-220ENST00000582092 IGHV3-74A0A0B4J1X5 117 aa7.16□□□□□ -1.26
SS18-220ENST00000582092 IGHV3-66A0A0C4DH42 116 aa7.16□□□□□ -1.26
SS18-220ENST00000582092 K7EN84 100 aa7.16□□□□□ -1.26
SS18-220ENST00000582092 BUB3O43684 328 aa7.16□□□□□ -1.26
SS18-220ENST00000582092 P01737 135 aa7.16□□□□□ -1.26
Retrieved 100 of 20,778 RNA–protein pairs in 14.1 ms