RNA–Protein interactions for RNA: ENST00000580751.5

SS18-216, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 4

Gene SS18, Length 547 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-216ENST00000580751 APOHP02749 345 aaPredicted RBP11.68□□□□□ -0.54
SS18-216ENST00000580751 HIST1H1EP10412 219 aaKnown RBP11.68□□□□□ -0.54
SS18-216ENST00000580751 GP9P14770 177 aa11.68□□□□□ -0.54
SS18-216ENST00000580751 UQCC3Q6UW78 93 aa11.68□□□□□ -0.54
SS18-216ENST00000580751 FAM210AQ96ND0 272 aa11.68□□□□□ -0.54
SS18-216ENST00000580751 SCRT1Q9BWW7 348 aa11.68□□□□□ -0.54
SS18-216ENST00000580751 IGHV3-66A0A0C4DH42 116 aa11.67□□□□□ -0.54
SS18-216ENST00000580751 TSPAN4O14817 238 aa11.67□□□□□ -0.54
SS18-216ENST00000580751 GUCA2BQ16661 112 aa11.67□□□□□ -0.54
SS18-216ENST00000580751 MORN5Q5VZ52 161 aa11.67□□□□□ -0.54
SS18-216ENST00000580751 OR8I2Q8N0Y5 310 aa11.67□□□□□ -0.54
SS18-216ENST00000580751 PCNPQ8WW12 178 aaKnown RBP11.67□□□□□ -0.54
SS18-216ENST00000580751 SPAG8Q99932 426 aaPredicted RBP11.67□□□□□ -0.54
SS18-216ENST00000580751 AURKAIP1Q9NWT8 199 aaPredicted RBP11.67□□□□□ -0.54
SS18-216ENST00000580751 SELENOKQ9Y6D0 94 aa11.67□□□□□ -0.54
SS18-216ENST00000580751 DNAH3Q8TD57 4116 aa11.67□□□□□ -0.54
SS18-216ENST00000580751 TRAV5A0A0B4J249 113 aa11.66□□□□□ -0.54
SS18-216ENST00000580751 A0A1W2PRE2 83 aa11.66□□□□□ -0.54
SS18-216ENST00000580751 HELTA6NFD8 242 aa11.66□□□□□ -0.54
SS18-216ENST00000580751 HMGB3O15347 200 aaKnown RBP11.66□□□□□ -0.54
SS18-216ENST00000580751 ZNF253O75346 499 aa11.66□□□□□ -0.54
SS18-216ENST00000580751 GALR1P47211 349 aa11.66□□□□□ -0.54
SS18-216ENST00000580751 FGF8P55075 233 aaPredicted RBP11.66□□□□□ -0.54
SS18-216ENST00000580751 UBE2L3P68036 154 aaKnown RBP11.66□□□□□ -0.54
SS18-216ENST00000580751 CCL20P78556 96 aa11.66□□□□□ -0.54
SS18-216ENST00000580751 DEFA6Q01524 100 aa11.66□□□□□ -0.54
SS18-216ENST00000580751 PDE6HQ13956 83 aa11.66□□□□□ -0.54
SS18-216ENST00000580751 PEA15Q15121 130 aa11.66□□□□□ -0.54
SS18-216ENST00000580751 SAMD13Q5VXD3 122 aa11.66□□□□□ -0.54
SS18-216ENST00000580751 C16orf54Q6UWD8 224 aa11.66□□□□□ -0.54
SS18-216ENST00000580751 TCF24Q7RTU0 167 aa11.66□□□□□ -0.54
SS18-216ENST00000580751 GTSCR1Q86UQ5 136 aa11.66□□□□□ -0.54
SS18-216ENST00000580751 FXYD5Q96DB9 178 aa11.66□□□□□ -0.54
SS18-216ENST00000580751 ZNF503Q96F45 646 aa11.66□□□□□ -0.54
SS18-216ENST00000580751 PRR25Q96S07 402 aa11.66□□□□□ -0.54
SS18-216ENST00000580751 TCEAL7Q9BRU2 100 aa11.66□□□□□ -0.54
SS18-216ENST00000580751 VAX2Q9UIW0 290 aa11.66□□□□□ -0.54
SS18-216ENST00000580751 A0A087X0K7 114 aa11.65□□□□□ -0.54
SS18-216ENST00000580751 RBFOX3A6NFN3 312 aa11.65□□□□□ -0.54
SS18-216ENST00000580751 ZNF785A8K8V0 405 aa11.65□□□□□ -0.54
SS18-216ENST00000580751 MRPS12O15235 138 aaKnown RBP11.65□□□□□ -0.54
SS18-216ENST00000580751 PRB2P02812 416 aaPredicted RBP11.65□□□□□ -0.54
SS18-216ENST00000580751 NBEAP1P0C6P0 100 aa11.65□□□□□ -0.54
SS18-216ENST00000580751 BCL2P10415 239 aa11.65□□□□□ -0.54
SS18-216ENST00000580751 ZNF506Q5JVG8 444 aa11.65□□□□□ -0.54
SS18-216ENST00000580751 FAM90A2PQ658T7 463 aa11.65□□□□□ -0.54
SS18-216ENST00000580751 COMMD7Q86VX2 200 aa11.65□□□□□ -0.54
SS18-216ENST00000580751 LYPD1Q8N2G4 141 aa11.65□□□□□ -0.54
SS18-216ENST00000580751 CLEC5AQ9NY25 188 aa11.65□□□□□ -0.54
SS18-216ENST00000580751 GNG13Q9P2W3 67 aa11.65□□□□□ -0.54
SS18-216ENST00000580751 OR4C46A6NHA9 309 aa11.64□□□□□ -0.55
SS18-216ENST00000580751 IGLC2P0DOY2 106 aa11.64□□□□□ -0.55
SS18-216ENST00000580751 RPL11P62913 178 aaKnown RBP11.64□□□□□ -0.55
SS18-216ENST00000580751 PAFAH1B2P68402 229 aa11.64□□□□□ -0.55
SS18-216ENST00000580751 IQCF2Q8IXL9 164 aa11.64□□□□□ -0.55
SS18-216ENST00000580751 ARL6IP6Q8N6S5 226 aa11.64□□□□□ -0.55
SS18-216ENST00000580751 GLMPQ8WWB7 406 aa11.64□□□□□ -0.55
SS18-216ENST00000580751 LOC102723971A0A1B0GUV8 181 aa11.63□□□□□ -0.55
SS18-216ENST00000580751 LEMD1Q68G75 181 aa11.63□□□□□ -0.55
SS18-216ENST00000580751 TRBV19A0A075B6N1 114 aa11.62□□□□□ -0.55
SS18-216ENST00000580751 TRAV2A0A0B4J234 112 aa11.62□□□□□ -0.55
SS18-216ENST00000580751 A0A1B0GV50 99 aa11.62□□□□□ -0.55
SS18-216ENST00000580751 PDE6DO43924 150 aa11.62□□□□□ -0.55
SS18-216ENST00000580751 PYYP10082 97 aa11.62□□□□□ -0.55
SS18-216ENST00000580751 ATF4P18848 351 aaPredicted RBP11.62□□□□□ -0.55
SS18-216ENST00000580751 CD81P60033 236 aa11.62□□□□□ -0.55
SS18-216ENST00000580751 PSG9Q00887 426 aa11.62□□□□□ -0.55
SS18-216ENST00000580751 MEF2BQ02080 365 aaPredicted RBP11.62□□□□□ -0.55
SS18-216ENST00000580751 SIGLEC15Q6ZMC9 328 aa11.62□□□□□ -0.55
SS18-216ENST00000580751 EIF5A2Q9GZV4 153 aaKnown RBP11.62□□□□□ -0.55
SS18-216ENST00000580751 TMPRSS5Q9H3S3 457 aa11.62□□□□□ -0.55
SS18-216ENST00000580751 IGKV3-7A0A075B6H7 116 aa11.61□□□□□ -0.55
SS18-216ENST00000580751 FAM74A7A6NL05 159 aa11.61□□□□□ -0.55
SS18-216ENST00000580751 K7EIL1 84 aa11.61□□□□□ -0.55
SS18-216ENST00000580751 DNASE2O00115 360 aaPredicted RBP11.61□□□□□ -0.55
SS18-216ENST00000580751 PAGE4O60829 102 aa11.61□□□□□ -0.55
SS18-216ENST00000580751 OR10J4P0C629 311 aa11.61□□□□□ -0.55
SS18-216ENST00000580751 MS4A6AQ9H2W1 248 aa11.61□□□□□ -0.55
SS18-216ENST00000580751 F6UZH7 168 aa11.6□□□□□ -0.55
SS18-216ENST00000580751 TMEM250H0YL14 139 aa11.6□□□□□ -0.55
SS18-216ENST00000580751 EIF3GO75821 320 aaKnown RBP eCLIP11.6□□□□□ -0.55
SS18-216ENST00000580751 HAGHQ16775 308 aa11.6□□□□□ -0.55
SS18-216ENST00000580751 TOR2AQ5JU69 321 aa11.6□□□□□ -0.55
SS18-216ENST00000580751 GBGT1Q8N5D6 347 aa11.6□□□□□ -0.55
SS18-216ENST00000580751 MRAPQ8TCY5 172 aa11.6□□□□□ -0.55
SS18-216ENST00000580751 SLC50A1Q9BRV3 221 aa11.6□□□□□ -0.55
SS18-216ENST00000580751 NRN1Q9NPD7 142 aa11.6□□□□□ -0.55
SS18-216ENST00000580751 OTORQ9NRC9 128 aa11.6□□□□□ -0.55
SS18-216ENST00000580751 ZNF586Q9NXT0 402 aa11.6□□□□□ -0.55
SS18-216ENST00000580751 C11orf94C9JXX5 98 aa11.59□□□□□ -0.55
SS18-216ENST00000580751 H3BQ15 152 aa11.59□□□□□ -0.55
SS18-216ENST00000580751 CD7P09564 240 aa11.59□□□□□ -0.55
SS18-216ENST00000580751 TFPI2P48307 235 aa11.59□□□□□ -0.55
SS18-216ENST00000580751 CMC4P56277 68 aaPredicted RBP11.59□□□□□ -0.55
SS18-216ENST00000580751 ICAM4Q14773 271 aa11.59□□□□□ -0.55
SS18-216ENST00000580751 CCDC28AQ8IWP9 274 aa11.59□□□□□ -0.55
SS18-216ENST00000580751 Q8N1Y9 231 aa11.59□□□□□ -0.55
SS18-216ENST00000580751 RPUSD4Q96CM3 377 aaKnown RBP11.59□□□□□ -0.55
SS18-216ENST00000580751 AAMDCQ9H7C9 122 aa11.59□□□□□ -0.55
SS18-216ENST00000580751 PRELID1Q9Y255 219 aa11.59□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 39.7 ms