RNA–Protein interactions for RNA: ENST00000580002.5

SHMT1-207, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 2

Gene SHMT1, Length 1,759 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-207ENST00000580002 NARS2Q96I59 477 aaKnown RBP18.98■□□□□ 0.63
SHMT1-207ENST00000580002 TREM1Q9NP99 234 aa18.98■□□□□ 0.63
SHMT1-207ENST00000580002 MANBALQ9NQG1 85 aa18.98■□□□□ 0.63
SHMT1-207ENST00000580002 VAX2Q9UIW0 290 aa18.98■□□□□ 0.63
SHMT1-207ENST00000580002 A0A1W2PS18 150 aa18.97■□□□□ 0.63
SHMT1-207ENST00000580002 OVOL1O14753 267 aa18.97■□□□□ 0.63
SHMT1-207ENST00000580002 HLA-DMBP28068 263 aa18.97■□□□□ 0.63
SHMT1-207ENST00000580002 SUMO1P63165 101 aaKnown RBP18.97■□□□□ 0.63
SHMT1-207ENST00000580002 C11orf94C9JXX5 98 aa18.96■□□□□ 0.63
SHMT1-207ENST00000580002 TCF24Q7RTU0 167 aa18.96■□□□□ 0.63
SHMT1-207ENST00000580002 EIF4E3Q8N5X7 224 aaKnown RBP18.96■□□□□ 0.63
SHMT1-207ENST00000580002 IFNA1P01562 189 aa18.96■□□□□ 0.63
SHMT1-207ENST00000580002 ATF4P18848 351 aaPredicted RBP18.96■□□□□ 0.63
SHMT1-207ENST00000580002 S100A7P31151 101 aa18.96■□□□□ 0.63
SHMT1-207ENST00000580002 GALR1P47211 349 aa18.96■□□□□ 0.63
SHMT1-207ENST00000580002 RPL11P62913 178 aaKnown RBP18.96■□□□□ 0.63
SHMT1-207ENST00000580002 FAM90A2PQ658T7 463 aa18.96■□□□□ 0.63
SHMT1-207ENST00000580002 GBGT1Q8N5D6 347 aa18.96■□□□□ 0.63
SHMT1-207ENST00000580002 TMEM158Q8WZ71 300 aa18.96■□□□□ 0.63
SHMT1-207ENST00000580002 PEMTQ9UBM1 199 aa18.96■□□□□ 0.63
SHMT1-207ENST00000580002 GRAMD2BQ96HH9 432 aa18.95■□□□□ 0.62
SHMT1-207ENST00000580002 ZNF747Q9BV97 191 aa18.95■□□□□ 0.62
SHMT1-207ENST00000580002 Q9H3A6 140 aa18.95■□□□□ 0.62
SHMT1-207ENST00000580002 PGPA6NDG6 321 aa18.94■□□□□ 0.62
SHMT1-207ENST00000580002 SRP19P09132 144 aaKnown RBP18.94■□□□□ 0.62
SHMT1-207ENST00000580002 MEF2BQ02080 365 aaPredicted RBP18.94■□□□□ 0.62
SHMT1-207ENST00000580002 CCDC28AQ8IWP9 274 aa18.94■□□□□ 0.62
SHMT1-207ENST00000580002 A0A1W2PRE2 83 aa18.93■□□□□ 0.62
SHMT1-207ENST00000580002 PF4P02776 101 aa18.93■□□□□ 0.62
SHMT1-207ENST00000580002 PPT1P50897 306 aa18.93■□□□□ 0.62
SHMT1-207ENST00000580002 GNG5P63218 68 aa18.93■□□□□ 0.62
SHMT1-207ENST00000580002 PEA15Q15121 130 aa18.93■□□□□ 0.62
SHMT1-207ENST00000580002 LINC00482Q8N8I6 264 aa18.93■□□□□ 0.62
SHMT1-207ENST00000580002 GPR82Q96P67 336 aa18.93■□□□□ 0.62
SHMT1-207ENST00000580002 CEBPGP53567 150 aa18.93■□□□□ 0.62
SHMT1-207ENST00000580002 RNF182Q8N6D2 247 aa18.93■□□□□ 0.62
SHMT1-207ENST00000580002 C3orf56Q8N813 242 aa18.93■□□□□ 0.62
SHMT1-207ENST00000580002 A0A087X0K7 114 aa18.92■□□□□ 0.62
SHMT1-207ENST00000580002 TRAV8-2A0A0B4J237 113 aa18.92■□□□□ 0.62
SHMT1-207ENST00000580002 C12orf54Q6X4T0 127 aa18.92■□□□□ 0.62
SHMT1-207ENST00000580002 WFDC3Q8IUB2 231 aa18.92■□□□□ 0.62
SHMT1-207ENST00000580002 SCO2A0A1W2PP80 73 aa18.91■□□□□ 0.62
SHMT1-207ENST00000580002 M0R3E3 92 aa18.91■□□□□ 0.62
SHMT1-207ENST00000580002 TFPI2P48307 235 aa18.91■□□□□ 0.62
SHMT1-207ENST00000580002 CYB561D1Q8N8Q1 229 aa18.91■□□□□ 0.62
SHMT1-207ENST00000580002 RNF24Q9Y225 148 aa18.91■□□□□ 0.62
SHMT1-207ENST00000580002 ZNF331Q9NQX6 463 aaPredicted RBP18.91■□□□□ 0.62
SHMT1-207ENST00000580002 UQCC3Q6UW78 93 aa18.9■□□□□ 0.62
SHMT1-207ENST00000580002 MDFIQ99750 246 aa18.9■□□□□ 0.62
SHMT1-207ENST00000580002 IZUMO1RA6ND01 250 aa18.89■□□□□ 0.61
SHMT1-207ENST00000580002 ZNF705FA8MVS1 300 aaPredicted RBP18.89■□□□□ 0.61
SHMT1-207ENST00000580002 ADCYAP1P18509 176 aa18.89■□□□□ 0.61
SHMT1-207ENST00000580002 DEFB114Q30KQ6 69 aa18.89■□□□□ 0.61
SHMT1-207ENST00000580002 LINC00052Q96N35 136 aa18.89■□□□□ 0.61
SHMT1-207ENST00000580002 DERL1Q9BUN8 251 aa18.89■□□□□ 0.61
SHMT1-207ENST00000580002 RPH3ALQ9UNE2 315 aa18.89■□□□□ 0.61
SHMT1-207ENST00000580002 SOCS3O14543 225 aa18.88■□□□□ 0.61
SHMT1-207ENST00000580002 SFTA3P0C7M3 94 aa18.88■□□□□ 0.61
SHMT1-207ENST00000580002 FAM24BQ8N5W8 94 aa18.88■□□□□ 0.61
SHMT1-207ENST00000580002 C20orf173Q96LM9 149 aa18.88■□□□□ 0.61
SHMT1-207ENST00000580002 LINC00479Q96M42 142 aa18.88■□□□□ 0.61
SHMT1-207ENST00000580002 MS4A6AQ9H2W1 248 aa18.88■□□□□ 0.61
SHMT1-207ENST00000580002 TMEM218A2RU14 115 aa18.88■□□□□ 0.61
SHMT1-207ENST00000580002 HELTA6NFD8 242 aa18.88■□□□□ 0.61
SHMT1-207ENST00000580002 SLC25A5P05141 298 aaKnown RBP18.88■□□□□ 0.61
SHMT1-207ENST00000580002 CD300EQ496F6 205 aaPredicted RBP18.88■□□□□ 0.61
SHMT1-207ENST00000580002 TMEM61Q8N0U2 210 aa18.88■□□□□ 0.61
SHMT1-207ENST00000580002 NRN1Q9NPD7 142 aa18.88■□□□□ 0.61
SHMT1-207ENST00000580002 OTORQ9NRC9 128 aa18.88■□□□□ 0.61
SHMT1-207ENST00000580002 ARL2-SNX15V9GYD0 113 aa18.88■□□□□ 0.61
SHMT1-207ENST00000580002 M0QZ24 198 aa18.87■□□□□ 0.61
SHMT1-207ENST00000580002 DEFB1P60022 68 aa18.87■□□□□ 0.61
SHMT1-207ENST00000580002 PDE6HQ13956 83 aa18.87■□□□□ 0.61
SHMT1-207ENST00000580002 DYNLRB2Q8TF09 96 aa18.87■□□□□ 0.61
SHMT1-207ENST00000580002 SLC35B3Q9H1N7 401 aa18.87■□□□□ 0.61
SHMT1-207ENST00000580002 SAP30O75446 220 aa18.86■□□□□ 0.61
SHMT1-207ENST00000580002 DCANP1Q8TF63 244 aa18.86■□□□□ 0.61
SHMT1-207ENST00000580002 C16orf92Q96LL3 132 aa18.86■□□□□ 0.61
SHMT1-207ENST00000580002 SGK494Q96LW2 274 aa18.86■□□□□ 0.61
SHMT1-207ENST00000580002 SORL1Q92673 2214 aa18.86■□□□□ 0.61
SHMT1-207ENST00000580002 NOTCH3Q9UM47 2321 aa18.86■□□□□ 0.61
SHMT1-207ENST00000580002 BMI1P35226 326 aa18.86■□□□□ 0.61
SHMT1-207ENST00000580002 EPDR1Q9UM22 224 aa18.86■□□□□ 0.61
SHMT1-207ENST00000580002 PRAC2D3DTV9 90 aa18.85■□□□□ 0.61
SHMT1-207ENST00000580002 TAGLN2P37802 199 aaKnown RBP18.85■□□□□ 0.61
SHMT1-207ENST00000580002 RPUSD4Q96CM3 377 aaKnown RBP18.85■□□□□ 0.61
SHMT1-207ENST00000580002 TRAV34A0A0B4J273 112 aa18.84■□□□□ 0.61
SHMT1-207ENST00000580002 ZNF253O75346 499 aa18.83■□□□□ 0.61
SHMT1-207ENST00000580002 PSG9Q00887 426 aa18.83■□□□□ 0.61
SHMT1-207ENST00000580002 LYPD1Q8N2G4 141 aa18.83■□□□□ 0.61
SHMT1-207ENST00000580002 ASCL2Q99929 193 aa18.83■□□□□ 0.61
SHMT1-207ENST00000580002 PDE6DO43924 150 aa18.83■□□□□ 0.6
SHMT1-207ENST00000580002 ZNF674Q2M3X9 581 aa18.83■□□□□ 0.6
SHMT1-207ENST00000580002 SHISA2Q6UWI4 295 aa18.83■□□□□ 0.6
SHMT1-207ENST00000580002 SMDT1Q9H4I9 107 aa18.83■□□□□ 0.6
SHMT1-207ENST00000580002 AAMDCQ9H7C9 122 aa18.83■□□□□ 0.6
SHMT1-207ENST00000580002 SIGLEC8Q9NYZ4 499 aa18.83■□□□□ 0.6
SHMT1-207ENST00000580002 CMYA5Q8N3K9 4069 aa18.82■□□□□ 0.6
SHMT1-207ENST00000580002 S100A1P23297 94 aa18.82■□□□□ 0.6
SHMT1-207ENST00000580002 C5orf17Q8NAS9 161 aa18.82■□□□□ 0.6
Retrieved 100 of 20,778 RNA–protein pairs in 35.7 ms