RNA–Protein interactions for RNA: ENST00000578954.5

SS18-211, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 3

Gene SS18, Length 756 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-211ENST00000578954 LOC102723971A0A1B0GUV8 181 aa12.16□□□□□ -0.46
SS18-211ENST00000578954 RAB19A4D1S5 217 aa12.16□□□□□ -0.46
SS18-211ENST00000578954 FAM74A7A6NL05 159 aa12.16□□□□□ -0.46
SS18-211ENST00000578954 ZNF785A8K8V0 405 aa12.16□□□□□ -0.46
SS18-211ENST00000578954 SOCS3O14543 225 aa12.16□□□□□ -0.46
SS18-211ENST00000578954 NDUFS6O75380 124 aaKnown RBP12.16□□□□□ -0.46
SS18-211ENST00000578954 KRTAP21-3Q3LHN1 58 aa12.16□□□□□ -0.46
SS18-211ENST00000578954 ZNF506Q5JVG8 444 aa12.16□□□□□ -0.46
SS18-211ENST00000578954 LYPD1Q8N2G4 141 aa12.16□□□□□ -0.46
SS18-211ENST00000578954 OR2K2Q8NGT1 345 aa12.16□□□□□ -0.46
SS18-211ENST00000578954 DYNLRB2Q8TF09 96 aa12.16□□□□□ -0.46
SS18-211ENST00000578954 TXNDC17Q9BRA2 123 aa12.16□□□□□ -0.46
SS18-211ENST00000578954 SLC50A1Q9BRV3 221 aa12.16□□□□□ -0.46
SS18-211ENST00000578954 YTHDF2Q9Y5A9 579 aaKnown RBP12.16□□□□□ -0.46
SS18-211ENST00000578954 TRAV2A0A0B4J234 112 aa12.15□□□□□ -0.46
SS18-211ENST00000578954 SLC17A3O00476 420 aa12.15□□□□□ -0.46
SS18-211ENST00000578954 TSPAN4O14817 238 aa12.15□□□□□ -0.46
SS18-211ENST00000578954 PAGE4O60829 102 aa12.15□□□□□ -0.46
SS18-211ENST00000578954 IGLV1-51P01701 117 aa12.15□□□□□ -0.46
SS18-211ENST00000578954 SAMD13Q5VXD3 122 aa12.15□□□□□ -0.46
SS18-211ENST00000578954 SPATA3Q8NHX4 192 aa12.15□□□□□ -0.46
SS18-211ENST00000578954 BLNKQ8WV28 456 aa12.15□□□□□ -0.46
SS18-211ENST00000578954 NKX6-2Q9C056 277 aaPredicted RBP12.15□□□□□ -0.46
SS18-211ENST00000578954 ZNF331Q9NQX6 463 aaPredicted RBP12.15□□□□□ -0.46
SS18-211ENST00000578954 ANK2Q01484 3957 aa12.15□□□□□ -0.46
SS18-211ENST00000578954 RBFOX3A6NFN3 312 aa12.14□□□□□ -0.47
SS18-211ENST00000578954 GGTLC3B5MD39 225 aa12.14□□□□□ -0.47
SS18-211ENST00000578954 H3BTX0 84 aa12.14□□□□□ -0.47
SS18-211ENST00000578954 SAP30O75446 220 aa12.14□□□□□ -0.47
SS18-211ENST00000578954 SNRPCP09234 159 aaKnown RBP12.14□□□□□ -0.47
SS18-211ENST00000578954 INSL3P51460 131 aa12.14□□□□□ -0.47
SS18-211ENST00000578954 UBE2G2P60604 165 aa12.14□□□□□ -0.47
SS18-211ENST00000578954 PSG9Q00887 426 aa12.14□□□□□ -0.47
SS18-211ENST00000578954 CCDC28AQ8IWP9 274 aa12.14□□□□□ -0.47
SS18-211ENST00000578954 TMEM61Q8N0U2 210 aa12.14□□□□□ -0.47
SS18-211ENST00000578954 EIF4E3Q8N5X7 224 aaKnown RBP12.14□□□□□ -0.47
SS18-211ENST00000578954 DCANP1Q8TF63 244 aa12.14□□□□□ -0.47
SS18-211ENST00000578954 MCRIP2Q9BUT9 160 aaKnown RBP12.14□□□□□ -0.47
SS18-211ENST00000578954 OTORQ9NRC9 128 aa12.14□□□□□ -0.47
SS18-211ENST00000578954 VAX2Q9UIW0 290 aa12.14□□□□□ -0.47
SS18-211ENST00000578954 TRAV8-2A0A0B4J237 113 aa12.13□□□□□ -0.47
SS18-211ENST00000578954 ICAM4Q14773 271 aa12.13□□□□□ -0.47
SS18-211ENST00000578954 HAGHQ16775 308 aa12.13□□□□□ -0.47
SS18-211ENST00000578954 CD300EQ496F6 205 aaPredicted RBP12.13□□□□□ -0.47
SS18-211ENST00000578954 TOR2AQ5JU69 321 aa12.13□□□□□ -0.47
SS18-211ENST00000578954 MS4A6AQ9H2W1 248 aa12.13□□□□□ -0.47
SS18-211ENST00000578954 Q9H3A6 140 aa12.13□□□□□ -0.47
SS18-211ENST00000578954 SMDT1Q9H4I9 107 aa12.13□□□□□ -0.47
SS18-211ENST00000578954 CLEC5AQ9NY25 188 aa12.13□□□□□ -0.47
SS18-211ENST00000578954 K7EQG2 157 aa12.12□□□□□ -0.47
SS18-211ENST00000578954 ISLRO14498 428 aa12.12□□□□□ -0.47
SS18-211ENST00000578954 WIPF1O43516 503 aa12.12□□□□□ -0.47
SS18-211ENST00000578954 ATP5G3P48201 142 aa12.12□□□□□ -0.47
SS18-211ENST00000578954 RANP62826 216 aaKnown RBP12.12□□□□□ -0.47
SS18-211ENST00000578954 MEF2BQ02080 365 aaPredicted RBP12.12□□□□□ -0.47
SS18-211ENST00000578954 NDUFA5Q16718 116 aa12.12□□□□□ -0.47
SS18-211ENST00000578954 C9orf66Q5T8R8 295 aa12.12□□□□□ -0.47
SS18-211ENST00000578954 COMMD7Q86VX2 200 aa12.12□□□□□ -0.47
SS18-211ENST00000578954 ARL6IP6Q8N6S5 226 aa12.12□□□□□ -0.47
SS18-211ENST00000578954 SPAG8Q99932 426 aaPredicted RBP12.12□□□□□ -0.47
SS18-211ENST00000578954 RARRES2Q99969 163 aa12.12□□□□□ -0.47
SS18-211ENST00000578954 TCEAL7Q9BRU2 100 aa12.12□□□□□ -0.47
SS18-211ENST00000578954 VWFP04275 2813 aa12.12□□□□□ -0.47
SS18-211ENST00000578954 C11orf94C9JXX5 98 aa12.11□□□□□ -0.47
SS18-211ENST00000578954 CD33P20138 364 aa12.11□□□□□ -0.47
SS18-211ENST00000578954 CD81P60033 236 aa12.11□□□□□ -0.47
SS18-211ENST00000578954 RPL11P62913 178 aaKnown RBP12.11□□□□□ -0.47
SS18-211ENST00000578954 CST9LP1Q5W188 147 aa12.11□□□□□ -0.47
SS18-211ENST00000578954 UQCC3Q6UW78 93 aa12.11□□□□□ -0.47
SS18-211ENST00000578954 RBPMS2Q6ZRY4 209 aaKnown RBP12.11□□□□□ -0.47
SS18-211ENST00000578954 MRPL53Q96EL3 112 aaKnown RBP12.11□□□□□ -0.47
SS18-211ENST00000578954 AAMDCQ9H7C9 122 aa12.11□□□□□ -0.47
SS18-211ENST00000578954 PRELID1Q9Y255 219 aa12.11□□□□□ -0.47
SS18-211ENST00000578954 SELENOKQ9Y6D0 94 aa12.11□□□□□ -0.47
SS18-211ENST00000578954 SUMO1P63165 101 aaKnown RBP12.1□□□□□ -0.47
SS18-211ENST00000578954 PAFAH1B2P68402 229 aa12.1□□□□□ -0.47
SS18-211ENST00000578954 SRSF3P84103 164 aaKnown RBP12.1□□□□□ -0.47
SS18-211ENST00000578954 PEA15Q15121 130 aa12.1□□□□□ -0.47
SS18-211ENST00000578954 EXOC3-AS1Q8N2X6 119 aa12.1□□□□□ -0.47
SS18-211ENST00000578954 C5orf17Q8NAS9 161 aa12.1□□□□□ -0.47
SS18-211ENST00000578954 RXFP4Q8TDU9 374 aa12.1□□□□□ -0.47
SS18-211ENST00000578954 C11orf52Q96A22 123 aa12.1□□□□□ -0.47
SS18-211ENST00000578954 C16orf92Q96LL3 132 aa12.1□□□□□ -0.47
SS18-211ENST00000578954 EIF5A2Q9GZV4 153 aaKnown RBP12.1□□□□□ -0.47
SS18-211ENST00000578954 TRRAPQ9Y4A5 3859 aa12.1□□□□□ -0.47
SS18-211ENST00000578954 IZUMO1RA6ND01 250 aa12.09□□□□□ -0.47
SS18-211ENST00000578954 PGPA6NDG6 321 aa12.09□□□□□ -0.47
SS18-211ENST00000578954 LCN12Q6JVE5 192 aa12.09□□□□□ -0.47
SS18-211ENST00000578954 GBGT1Q8N5D6 347 aa12.09□□□□□ -0.47
SS18-211ENST00000578954 ZNF256Q9Y2P7 627 aaPredicted RBP12.09□□□□□ -0.47
SS18-211ENST00000578954 NOTCH3Q9UM47 2321 aa12.09□□□□□ -0.47
SS18-211ENST00000578954 IGKV3-7A0A075B6H7 116 aa12.08□□□□□ -0.48
SS18-211ENST00000578954 F6UZH7 168 aa12.08□□□□□ -0.48
SS18-211ENST00000578954 TMEM250H0YL14 139 aa12.08□□□□□ -0.48
SS18-211ENST00000578954 DNASE2O00115 360 aaPredicted RBP12.08□□□□□ -0.48
SS18-211ENST00000578954 PDE6DO43924 150 aa12.08□□□□□ -0.48
SS18-211ENST00000578954 ID1P41134 155 aa12.08□□□□□ -0.48
SS18-211ENST00000578954 OR4C46A6NHA9 309 aa12.07□□□□□ -0.48
SS18-211ENST00000578954 C9JQL5 133 aa12.07□□□□□ -0.48
SS18-211ENST00000578954 M0R3E3 92 aa12.07□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 69.4 ms