RNA–Protein interactions for RNA: ENST00000576149.5

VPS53-220, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 5

Gene VPS53, Length 2,444 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-220ENST00000576149 C17orf77Q96MU5 243 aa7.92□□□□□ -1.14
VPS53-220ENST00000576149 FBXL7Q9UJT9 491 aa7.92□□□□□ -1.14
VPS53-220ENST00000576149 TBL2Q9Y4P3 447 aaKnown RBP7.92□□□□□ -1.14
VPS53-220ENST00000576149 S4R3C0 116 aa7.92□□□□□ -1.14
VPS53-220ENST00000576149 ABCA1O95477 2261 aa7.92□□□□□ -1.14
VPS53-220ENST00000576149 ATRXP46100 2492 aa7.92□□□□□ -1.14
VPS53-220ENST00000576149 F8W735 103 aaPredicted RBP7.92□□□□□ -1.14
VPS53-220ENST00000576149 FCGR2BP31994 310 aaPredicted RBP7.92□□□□□ -1.14
VPS53-220ENST00000576149 AMTP48728 403 aa7.92□□□□□ -1.14
VPS53-220ENST00000576149 CAMPP49913 170 aa7.92□□□□□ -1.14
VPS53-220ENST00000576149 GFRA4Q9GZZ7 299 aa7.92□□□□□ -1.14
VPS53-220ENST00000576149 NRN1Q9NPD7 142 aa7.92□□□□□ -1.14
VPS53-220ENST00000576149 RNF114Q9Y508 228 aa7.92□□□□□ -1.14
VPS53-220ENST00000576149 ZNF324O75467 553 aaPredicted RBP7.91□□□□□ -1.14
VPS53-220ENST00000576149 HLA-DRB1P01911 266 aa7.91□□□□□ -1.14
VPS53-220ENST00000576149 KLF5Q13887 457 aaPredicted RBP7.91□□□□□ -1.14
VPS53-220ENST00000576149 SMIM15Q7Z3B0 74 aa7.91□□□□□ -1.14
VPS53-220ENST00000576149 PRNTQ86SH4 94 aa7.91□□□□□ -1.14
VPS53-220ENST00000576149 CIARTQ8N365 385 aaPredicted RBP7.91□□□□□ -1.14
VPS53-220ENST00000576149 ZNF414Q96IQ9 312 aa7.91□□□□□ -1.14
VPS53-220ENST00000576149 SSBP4Q9BWG4 385 aaPredicted RBP7.91□□□□□ -1.14
VPS53-220ENST00000576149 UBTD1Q9HAC8 227 aa7.91□□□□□ -1.14
VPS53-220ENST00000576149 PEF1Q9UBV8 284 aaKnown RBP7.91□□□□□ -1.14
VPS53-220ENST00000576149 SOX21Q9Y651 276 aaPredicted RBP7.91□□□□□ -1.14
VPS53-220ENST00000576149 NBASA2RRP1 2371 aa7.91□□□□□ -1.14
VPS53-220ENST00000576149 HRNRQ86YZ3 2850 aaPredicted RBP7.91□□□□□ -1.14
VPS53-220ENST00000576149 FAM231BA6NCW3 169 aa7.91□□□□□ -1.14
VPS53-220ENST00000576149 TOX4O94842 621 aa7.91□□□□□ -1.14
VPS53-220ENST00000576149 PMCHP20382 165 aa7.91□□□□□ -1.14
VPS53-220ENST00000576149 EFNA4P52798 201 aa7.91□□□□□ -1.14
VPS53-220ENST00000576149 HBBP68871 147 aa7.91□□□□□ -1.14
VPS53-220ENST00000576149 TDRG1Q3Y452 100 aa7.91□□□□□ -1.14
VPS53-220ENST00000576149 LBHQ53QV2 105 aaPredicted RBP7.91□□□□□ -1.14
VPS53-220ENST00000576149 BCL6BQ8N143 479 aaPredicted RBP7.91□□□□□ -1.14
VPS53-220ENST00000576149 TMEM75Q8N9X5 138 aa7.91□□□□□ -1.14
VPS53-220ENST00000576149 VN1R17PQ8TDU5 208 aa7.91□□□□□ -1.14
VPS53-220ENST00000576149 ALKBH7Q9BT30 221 aaPredicted RBP7.91□□□□□ -1.14
VPS53-220ENST00000576149 PRORYQ9H606 182 aa7.91□□□□□ -1.14
VPS53-220ENST00000576149 C21orf62Q9NYP8 219 aa7.91□□□□□ -1.14
VPS53-220ENST00000576149 THYN1Q9P016 225 aa7.91□□□□□ -1.14
VPS53-220ENST00000576149 IGHV2-70DA0A0C4DH43 119 aa7.9□□□□□ -1.14
VPS53-220ENST00000576149 EGR2P11161 476 aaPredicted RBP7.9□□□□□ -1.14
VPS53-220ENST00000576149 COL8A1P27658 744 aa7.9□□□□□ -1.14
VPS53-220ENST00000576149 SCGB2A2Q13296 93 aa7.9□□□□□ -1.14
VPS53-220ENST00000576149 Q56UQ5 140 aa7.9□□□□□ -1.14
VPS53-220ENST00000576149 RBPMS2Q6ZRY4 209 aaKnown RBP7.9□□□□□ -1.14
VPS53-220ENST00000576149 OR4B1Q8NGF8 309 aa7.9□□□□□ -1.14
VPS53-220ENST00000576149 IGHV7-81A0A0B4J1V7 117 aa7.9□□□□□ -1.15
VPS53-220ENST00000576149 ZNF785A8K8V0 405 aa7.9□□□□□ -1.15
VPS53-220ENST00000576149 NDUFB8O95169 186 aa7.9□□□□□ -1.15
VPS53-220ENST00000576149 UBE2E1P51965 193 aa7.9□□□□□ -1.15
VPS53-220ENST00000576149 ATP5J2P56134 94 aa7.9□□□□□ -1.15
VPS53-220ENST00000576149 KRTDAPP60985 99 aa7.9□□□□□ -1.15
VPS53-220ENST00000576149 Q71RC1 249 aaPredicted RBP7.9□□□□□ -1.15
VPS53-220ENST00000576149 NIT1Q86X76 327 aa7.9□□□□□ -1.15
VPS53-220ENST00000576149 Q8N976 141 aa7.9□□□□□ -1.15
VPS53-220ENST00000576149 OR2D3Q8NGH3 330 aa7.9□□□□□ -1.15
VPS53-220ENST00000576149 ITLN2Q8WWU7 325 aaPredicted RBP7.9□□□□□ -1.15
VPS53-220ENST00000576149 PGLYRP4Q96LB8 373 aa7.9□□□□□ -1.15
VPS53-220ENST00000576149 C2orf88Q9BSF0 95 aa7.9□□□□□ -1.15
VPS53-220ENST00000576149 ZFP30Q9Y2G7 519 aa7.9□□□□□ -1.15
VPS53-220ENST00000576149 FAM106CPP0CH98 169 aa7.89□□□□□ -1.15
VPS53-220ENST00000576149 PDE6HQ13956 83 aa7.89□□□□□ -1.15
VPS53-220ENST00000576149 FAM19A2Q8N3H0 131 aa7.89□□□□□ -1.15
VPS53-220ENST00000576149 Q8N9W7 124 aa7.89□□□□□ -1.15
VPS53-220ENST00000576149 AJUBAQ96IF1 538 aa7.89□□□□□ -1.15
VPS53-220ENST00000576149 C20orf144Q9BQM9 153 aa7.89□□□□□ -1.15
VPS53-220ENST00000576149 TACC2O95359 2948 aa7.89□□□□□ -1.15
VPS53-220ENST00000576149 DIRC3C9JPN6 131 aa7.89□□□□□ -1.15
VPS53-220ENST00000576149 K7EQM0 130 aa7.89□□□□□ -1.15
VPS53-220ENST00000576149 PSG3Q16557 428 aa7.89□□□□□ -1.15
VPS53-220ENST00000576149 C1RLQ9NZP8 487 aa7.89□□□□□ -1.15
VPS53-220ENST00000576149 PSG8Q9UQ74 426 aa7.89□□□□□ -1.15
VPS53-220ENST00000576149 COL6A6A6NMZ7 2263 aa7.88□□□□□ -1.15
VPS53-220ENST00000576149 FOXA3P55318 350 aaPredicted RBP7.88□□□□□ -1.15
VPS53-220ENST00000576149 LMO4P61968 165 aa7.88□□□□□ -1.15
VPS53-220ENST00000576149 FAM120AOSQ5T036 256 aa7.88□□□□□ -1.15
VPS53-220ENST00000576149 ZC2HC1AQ96GY0 325 aa7.88□□□□□ -1.15
VPS53-220ENST00000576149 VAMP8Q9BV40 100 aa7.88□□□□□ -1.15
VPS53-220ENST00000576149 OR2T8A6NH00 312 aa7.88□□□□□ -1.15
VPS53-220ENST00000576149 M0R3E3 92 aa7.88□□□□□ -1.15
VPS53-220ENST00000576149 OVOL3O00110 214 aa7.88□□□□□ -1.15
VPS53-220ENST00000576149 IGHV3-23P01764 117 aa7.88□□□□□ -1.15
VPS53-220ENST00000576149 APOHP02749 345 aaPredicted RBP7.88□□□□□ -1.15
VPS53-220ENST00000576149 CTSGP08311 255 aa7.88□□□□□ -1.15
VPS53-220ENST00000576149 BPESC1Q9GZL8 116 aa7.88□□□□□ -1.15
VPS53-220ENST00000576149 TNFRSF18Q9Y5U5 241 aa7.88□□□□□ -1.15
VPS53-220ENST00000576149 C19orf84I3L1E1 186 aa7.87□□□□□ -1.15
VPS53-220ENST00000576149 HSBP1O75506 76 aa7.87□□□□□ -1.15
VPS53-220ENST00000576149 LINC00614P0C842 121 aa7.87□□□□□ -1.15
VPS53-220ENST00000576149 C3orf79P0CE67 100 aa7.87□□□□□ -1.15
VPS53-220ENST00000576149 NTF3P20783 257 aa7.87□□□□□ -1.15
VPS53-220ENST00000576149 SAA4P35542 130 aa7.87□□□□□ -1.15
VPS53-220ENST00000576149 UQCRFS1P47985 274 aa7.87□□□□□ -1.15
VPS53-220ENST00000576149 AAMDCQ9H7C9 122 aa7.87□□□□□ -1.15
VPS53-220ENST00000576149 PAM16Q9Y3D7 125 aa7.87□□□□□ -1.15
VPS53-220ENST00000576149 TRAV25A0A0B4J276 109 aa7.87□□□□□ -1.15
VPS53-220ENST00000576149 A0A1B0GW15 77 aa7.87□□□□□ -1.15
VPS53-220ENST00000576149 RPL7P18124 248 aaKnown RBP7.87□□□□□ -1.15
VPS53-220ENST00000576149 CRIP1P50238 77 aa7.87□□□□□ -1.15
Retrieved 100 of 20,778 RNA–protein pairs in 31.8 ms