RNA–Protein interactions for RNA: ENST00000574933.1

CCDC40-213, Transcript of coiled-coil domain containing 40, humanhuman

TSL 3

Gene CCDC40, Length 326 nt, Biotype retained intron.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-213ENST00000574933 STAG3L3P0CL85 134 aa13.52□□□□□ -0.25
CCDC40-213ENST00000574933 EIF5AL1Q6IS14 154 aaKnown RBP13.52□□□□□ -0.25
CCDC40-213ENST00000574933 RAB24Q969Q5 203 aa13.52□□□□□ -0.25
CCDC40-213ENST00000574933 SAT2Q96F10 170 aaPredicted RBP13.52□□□□□ -0.25
CCDC40-213ENST00000574933 PAXXQ9BUH6 204 aa13.52□□□□□ -0.25
CCDC40-213ENST00000574933 ACTR3CQ9C0K3 210 aaPredicted RBP13.52□□□□□ -0.25
CCDC40-213ENST00000574933 MEGF8Q7Z7M0 2845 aa13.51□□□□□ -0.25
CCDC40-213ENST00000574933 CTXND1A0A1B0GTU2 59 aa13.51□□□□□ -0.25
CCDC40-213ENST00000574933 PYYP10082 97 aa13.51□□□□□ -0.25
CCDC40-213ENST00000574933 ID1P41134 155 aa13.51□□□□□ -0.25
CCDC40-213ENST00000574933 SNRPD3P62318 126 aaKnown RBP13.51□□□□□ -0.25
CCDC40-213ENST00000574933 PDE6HQ13956 83 aa13.51□□□□□ -0.25
CCDC40-213ENST00000574933 DPPA3Q6W0C5 159 aa13.51□□□□□ -0.25
CCDC40-213ENST00000574933 TMED6Q8WW62 240 aa13.51□□□□□ -0.25
CCDC40-213ENST00000574933 FXYD5Q96DB9 178 aa13.51□□□□□ -0.25
CCDC40-213ENST00000574933 SLC50A1Q9BRV3 221 aa13.51□□□□□ -0.25
CCDC40-213ENST00000574933 ZNF586Q9NXT0 402 aa13.51□□□□□ -0.25
CCDC40-213ENST00000574933 TRBV19A0A075B6N1 114 aa13.5□□□□□ -0.25
CCDC40-213ENST00000574933 TRAV8-2A0A0B4J237 113 aa13.5□□□□□ -0.25
CCDC40-213ENST00000574933 BOLA2-SMG1P6H3BVE0 249 aa13.5□□□□□ -0.25
CCDC40-213ENST00000574933 ZNF688P0C7X2 276 aa13.5□□□□□ -0.25
CCDC40-213ENST00000574933 DEFA6Q01524 100 aa13.5□□□□□ -0.25
CCDC40-213ENST00000574933 ZNF726P1Q15940 193 aa13.5□□□□□ -0.25
CCDC40-213ENST00000574933 RNF141Q8WVD5 230 aa13.5□□□□□ -0.25
CCDC40-213ENST00000574933 C16orf92Q96LL3 132 aa13.5□□□□□ -0.25
CCDC40-213ENST00000574933 ZNF331Q9NQX6 463 aaPredicted RBP13.5□□□□□ -0.25
CCDC40-213ENST00000574933 CLEC5AQ9NY25 188 aa13.5□□□□□ -0.25
CCDC40-213ENST00000574933 OR7C2O60412 319 aa13.49□□□□□ -0.25
CCDC40-213ENST00000574933 NBEAP1P0C6P0 100 aa13.49□□□□□ -0.25
CCDC40-213ENST00000574933 RAB5CP51148 216 aa13.49□□□□□ -0.25
CCDC40-213ENST00000574933 DEFB131AP59861 70 aa13.49□□□□□ -0.25
CCDC40-213ENST00000574933 SSX7Q7RTT5 188 aa13.49□□□□□ -0.25
CCDC40-213ENST00000574933 SUN5Q8TC36 379 aa13.49□□□□□ -0.25
CCDC40-213ENST00000574933 PHYHIPLQ96FC7 376 aa13.49□□□□□ -0.25
CCDC40-213ENST00000574933 WFDC10AQ9H1F0 79 aa13.49□□□□□ -0.25
CCDC40-213ENST00000574933 UBQLN2Q9UHD9 624 aa13.49□□□□□ -0.25
CCDC40-213ENST00000574933 BOLA1Q9Y3E2 137 aa13.49□□□□□ -0.25
CCDC40-213ENST00000574933 SLC17A3O00476 420 aa13.48□□□□□ -0.25
CCDC40-213ENST00000574933 NDUFB4O95168 129 aa13.48□□□□□ -0.25
CCDC40-213ENST00000574933 DEFB125Q8N687 156 aa13.48□□□□□ -0.25
CCDC40-213ENST00000574933 CITED4Q96RK1 184 aa13.48□□□□□ -0.25
CCDC40-213ENST00000574933 EIF3GO75821 320 aaKnown RBP eCLIP13.47□□□□□ -0.25
CCDC40-213ENST00000574933 OR10J4P0C629 311 aa13.47□□□□□ -0.25
CCDC40-213ENST00000574933 ARL14EPLP0DKL9 152 aa13.47□□□□□ -0.25
CCDC40-213ENST00000574933 IGHV4-30-4P0DP06 118 aa13.47□□□□□ -0.25
CCDC40-213ENST00000574933 SULT1A2P50226 295 aa13.47□□□□□ -0.25
CCDC40-213ENST00000574933 UBE2L3P68036 154 aaKnown RBP13.47□□□□□ -0.25
CCDC40-213ENST00000574933 PSMG4Q5JS54 123 aa13.47□□□□□ -0.25
CCDC40-213ENST00000574933 MBD3L1Q8WWY6 194 aa13.47□□□□□ -0.25
CCDC40-213ENST00000574933 C20orf173Q96LM9 149 aa13.47□□□□□ -0.25
CCDC40-213ENST00000574933 CXorf1O96002 111 aa13.46□□□□□ -0.25
CCDC40-213ENST00000574933 SNRPCP09234 159 aaKnown RBP13.46□□□□□ -0.25
CCDC40-213ENST00000574933 PSG9Q00887 426 aa13.46□□□□□ -0.25
CCDC40-213ENST00000574933 PSG3Q16557 428 aa13.46□□□□□ -0.25
CCDC40-213ENST00000574933 LINC00322Q6ZN03 302 aaPredicted RBP13.46□□□□□ -0.25
CCDC40-213ENST00000574933 APRG1Q8IVJ8 170 aa13.46□□□□□ -0.25
CCDC40-213ENST00000574933 LYPD1Q8N2G4 141 aa13.46□□□□□ -0.25
CCDC40-213ENST00000574933 LRRC20Q8TCA0 184 aa13.46□□□□□ -0.25
CCDC40-213ENST00000574933 H3BTX0 84 aa13.45□□□□□ -0.26
CCDC40-213ENST00000574933 HMGB3O15347 200 aaKnown RBP13.45□□□□□ -0.26
CCDC40-213ENST00000574933 GCHFRP30047 84 aa13.45□□□□□ -0.26
CCDC40-213ENST00000574933 FHITP49789 147 aa13.45□□□□□ -0.26
CCDC40-213ENST00000574933 MRAPQ8TCY5 172 aa13.45□□□□□ -0.26
CCDC40-213ENST00000574933 SRD5A3Q9H8P0 318 aa13.45□□□□□ -0.26
CCDC40-213ENST00000574933 MAP1LC3B2A6NCE7 125 aa13.44□□□□□ -0.26
CCDC40-213ENST00000574933 ZNF124Q15973 351 aa13.44□□□□□ -0.26
CCDC40-213ENST00000574933 IGFL4Q6B9Z1 124 aa13.44□□□□□ -0.26
CCDC40-213ENST00000574933 FOXI2Q6ZQN5 318 aa13.44□□□□□ -0.26
CCDC40-213ENST00000574933 RNF182Q8N6D2 247 aa13.44□□□□□ -0.26
CCDC40-213ENST00000574933 FAM213BQ8TBF2 198 aa13.44□□□□□ -0.26
CCDC40-213ENST00000574933 BLNKQ8WV28 456 aa13.44□□□□□ -0.26
CCDC40-213ENST00000574933 MRPL53Q96EL3 112 aaKnown RBP13.44□□□□□ -0.26
CCDC40-213ENST00000574933 LINC00052Q96N35 136 aa13.44□□□□□ -0.26
CCDC40-213ENST00000574933 MAP1LC3BQ9GZQ8 125 aa13.44□□□□□ -0.26
CCDC40-213ENST00000574933 TMEM167BQ9NRX6 74 aa13.44□□□□□ -0.26
CCDC40-213ENST00000574933 PRELID1Q9Y255 219 aa13.44□□□□□ -0.26
CCDC40-213ENST00000574933 RBMY1BA6NDE4 496 aaKnown RBP13.43□□□□□ -0.26
CCDC40-213ENST00000574933 RBMY1EA6NEQ0 496 aaKnown RBP13.43□□□□□ -0.26
CCDC40-213ENST00000574933 RBMY1DP0C7P1 496 aaKnown RBP13.43□□□□□ -0.26
CCDC40-213ENST00000574933 HLA-DMBP28068 263 aa13.43□□□□□ -0.26
CCDC40-213ENST00000574933 CLUHP3Q96NS8 147 aa13.43□□□□□ -0.26
CCDC40-213ENST00000574933 SAV1Q9H4B6 383 aaPredicted RBP13.43□□□□□ -0.26
CCDC40-213ENST00000574933 TUBA4BQ9H853 241 aa13.43□□□□□ -0.26
CCDC40-213ENST00000574933 TRAV1-1A0A0B4J248 108 aa13.42□□□□□ -0.26
CCDC40-213ENST00000574933 A8MTW9 85 aa13.42□□□□□ -0.26
CCDC40-213ENST00000574933 HLA-DRB4P13762 266 aa13.42□□□□□ -0.26
CCDC40-213ENST00000574933 HLA-DRB4X5D2U9 266 aa13.42□□□□□ -0.26
CCDC40-213ENST00000574933 A0A0J9YX75 114 aa13.41□□□□□ -0.26
CCDC40-213ENST00000574933 H3BMM0 161 aa13.41□□□□□ -0.26
CCDC40-213ENST00000574933 H2AFB1P0C5Y9 115 aa13.41□□□□□ -0.26
CCDC40-213ENST00000574933 FRMD6-AS1P0C7T7 363 aa13.41□□□□□ -0.26
CCDC40-213ENST00000574933 DEFB121Q5J5C9 76 aa13.41□□□□□ -0.26
CCDC40-213ENST00000574933 TRPT1Q86TN4 253 aaKnown RBP13.41□□□□□ -0.26
CCDC40-213ENST00000574933 ARL6IP6Q8N6S5 226 aa13.41□□□□□ -0.26
CCDC40-213ENST00000574933 AAMDCQ9H7C9 122 aa13.41□□□□□ -0.26
CCDC40-213ENST00000574933 LOC102724200A0A096LPH7 203 aaPredicted RBP13.4□□□□□ -0.26
CCDC40-213ENST00000574933 KNCNA6PVL3 124 aa13.4□□□□□ -0.26
CCDC40-213ENST00000574933 FGF8P55075 233 aaPredicted RBP13.4□□□□□ -0.26
CCDC40-213ENST00000574933 FAM74A1Q5RGS3 127 aa13.4□□□□□ -0.26
CCDC40-213ENST00000574933 GDF5OSQ5U4N7 250 aa13.4□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 44.9 ms