RNA–Protein interactions for RNA: ENST00000571456.1

VPS53-210, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 3

Gene VPS53, Length 744 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-210ENST00000571456 PCLOQ9Y6V0 5065 aa15.28■□□□□ 0.04
VPS53-210ENST00000571456 IGLC2P0DOY2 106 aa15.27■□□□□ 0.04
VPS53-210ENST00000571456 PDE6HQ13956 83 aa15.27■□□□□ 0.04
VPS53-210ENST00000571456 KHDC3LQ587J8 217 aa15.27■□□□□ 0.04
VPS53-210ENST00000571456 GCSAMLQ5JQS6 135 aa15.27■□□□□ 0.04
VPS53-210ENST00000571456 SPATA31B1PQ5VZV4 182 aa15.27■□□□□ 0.04
VPS53-210ENST00000571456 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa15.27■□□□□ 0.04
VPS53-210ENST00000571456 DEFB125Q8N687 156 aa15.27■□□□□ 0.04
VPS53-210ENST00000571456 ZNF688P0C7X2 276 aa15.26■□□□□ 0.03
VPS53-210ENST00000571456 HIST1H1EP10412 219 aaKnown RBP15.26■□□□□ 0.03
VPS53-210ENST00000571456 DEFB131AP59861 70 aa15.26■□□□□ 0.03
VPS53-210ENST00000571456 OR10G4Q8NGN3 311 aa15.26■□□□□ 0.03
VPS53-210ENST00000571456 OR10G9Q8NGN4 311 aa15.26■□□□□ 0.03
VPS53-210ENST00000571456 OR10G7Q8NGN6 311 aa15.26■□□□□ 0.03
VPS53-210ENST00000571456 LRRC20Q8TCA0 184 aa15.26■□□□□ 0.03
VPS53-210ENST00000571456 ZNF471Q9BX82 626 aaPredicted RBP15.26■□□□□ 0.03
VPS53-210ENST00000571456 UBQLN2Q9UHD9 624 aa15.26■□□□□ 0.03
VPS53-210ENST00000571456 FRMD6-AS1P0C7T7 363 aa15.25■□□□□ 0.03
VPS53-210ENST00000571456 SPP1P10451 314 aa15.25■□□□□ 0.03
VPS53-210ENST00000571456 TPT1P13693 172 aaKnown RBP15.25■□□□□ 0.03
VPS53-210ENST00000571456 PSMG4Q5JS54 123 aa15.25■□□□□ 0.03
VPS53-210ENST00000571456 MORN5Q5VZ52 161 aa15.25■□□□□ 0.03
VPS53-210ENST00000571456 EIF5AL1Q6IS14 154 aaKnown RBP15.25■□□□□ 0.03
VPS53-210ENST00000571456 LINC00322Q6ZN03 302 aaPredicted RBP15.25■□□□□ 0.03
VPS53-210ENST00000571456 PQLC2Q6ZP29 291 aa15.25■□□□□ 0.03
VPS53-210ENST00000571456 MIR17HGQ75NE6 70 aa15.25■□□□□ 0.03
VPS53-210ENST00000571456 RPRMQ9NS64 109 aa15.25■□□□□ 0.03
VPS53-210ENST00000571456 LOC102724200A0A096LPH7 203 aaPredicted RBP15.24■□□□□ 0.03
VPS53-210ENST00000571456 SEC11BP0C7V7 166 aa15.24■□□□□ 0.03
VPS53-210ENST00000571456 LGALSLQ3ZCW2 172 aaPredicted RBP15.24■□□□□ 0.03
VPS53-210ENST00000571456 TMEM41BQ5BJD5 291 aa15.24■□□□□ 0.03
VPS53-210ENST00000571456 FAM24BQ8N5W8 94 aa15.24■□□□□ 0.03
VPS53-210ENST00000571456 STOML3Q8TAV4 291 aa15.24■□□□□ 0.03
VPS53-210ENST00000571456 FAM167A-AS1Q96KT0 104 aa15.24■□□□□ 0.03
VPS53-210ENST00000571456 SLC25A2Q9BXI2 301 aa15.24■□□□□ 0.03
VPS53-210ENST00000571456 OR51M1Q9H341 326 aa15.24■□□□□ 0.03
VPS53-210ENST00000571456 HERC2O95714 4834 aa15.23■□□□□ 0.03
VPS53-210ENST00000571456 TRAV5A0A0B4J249 113 aa15.23■□□□□ 0.03
VPS53-210ENST00000571456 KIR2DL5BA0A0G2JN68 375 aa15.23■□□□□ 0.03
VPS53-210ENST00000571456 KIR2DL5BA0A0G2JPC4 375 aa15.23■□□□□ 0.03
VPS53-210ENST00000571456 UMAD1C9J7I0 102 aa15.23■□□□□ 0.03
VPS53-210ENST00000571456 CDC34P49427 236 aaPredicted RBP15.23■□□□□ 0.03
VPS53-210ENST00000571456 APOC4P55056 127 aa15.23■□□□□ 0.03
VPS53-210ENST00000571456 PSG9Q00887 426 aa15.23■□□□□ 0.03
VPS53-210ENST00000571456 AKR1C8PQ5T2L2 129 aa15.23■□□□□ 0.03
VPS53-210ENST00000571456 BAP18Q8IXM2 172 aa15.23■□□□□ 0.03
VPS53-210ENST00000571456 KIR2DL5AQ8N109 375 aa15.23■□□□□ 0.03
VPS53-210ENST00000571456 KIR2DL5BQ8NHK3 375 aa15.23■□□□□ 0.03
VPS53-210ENST00000571456 C17orf77Q96MU5 243 aa15.23■□□□□ 0.03
VPS53-210ENST00000571456 PAXXQ9BUH6 204 aa15.23■□□□□ 0.03
VPS53-210ENST00000571456 ACTR3CQ9C0K3 210 aaPredicted RBP15.23■□□□□ 0.03
VPS53-210ENST00000571456 SH3BGRL3Q9H299 93 aa15.23■□□□□ 0.03
VPS53-210ENST00000571456 UBE2CO00762 179 aa15.22■□□□□ 0.03
VPS53-210ENST00000571456 RAB2AP61019 212 aa15.22■□□□□ 0.03
VPS53-210ENST00000571456 FOXI2Q6ZQN5 318 aa15.22■□□□□ 0.03
VPS53-210ENST00000571456 APRG1Q8IVJ8 170 aa15.22■□□□□ 0.03
VPS53-210ENST00000571456 STHQ8IWL8 128 aa15.22■□□□□ 0.03
VPS53-210ENST00000571456 WFDC10AQ9H1F0 79 aa15.22■□□□□ 0.03
VPS53-210ENST00000571456 ZNF331Q9NQX6 463 aaPredicted RBP15.22■□□□□ 0.03
VPS53-210ENST00000571456 OR7C2O60412 319 aa15.21■□□□□ 0.03
VPS53-210ENST00000571456 FAM122CQ6P4D5 195 aa15.21■□□□□ 0.03
VPS53-210ENST00000571456 SLC51BQ86UW2 128 aa15.21■□□□□ 0.03
VPS53-210ENST00000571456 RPP25LQ8N5L8 163 aaKnown RBP15.21■□□□□ 0.03
VPS53-210ENST00000571456 SAT2Q96F10 170 aaPredicted RBP15.21■□□□□ 0.03
VPS53-210ENST00000571456 LINC00052Q96N35 136 aa15.21■□□□□ 0.03
VPS53-210ENST00000571456 CLUHP3Q96NS8 147 aa15.21■□□□□ 0.03
VPS53-210ENST00000571456 PRELID1Q9Y255 219 aa15.21■□□□□ 0.03
VPS53-210ENST00000571456 TRBV19A0A075B6N1 114 aa15.2■□□□□ 0.02
VPS53-210ENST00000571456 NBEAP1P0C6P0 100 aa15.2■□□□□ 0.02
VPS53-210ENST00000571456 EBLN2Q6P2I7 272 aa15.2■□□□□ 0.02
VPS53-210ENST00000571456 LYPD1Q8N2G4 141 aa15.2■□□□□ 0.02
VPS53-210ENST00000571456 RNF141Q8WVD5 230 aa15.2■□□□□ 0.02
VPS53-210ENST00000571456 MRPL53Q96EL3 112 aaKnown RBP15.2■□□□□ 0.02
VPS53-210ENST00000571456 RCHY1Q96PM5 261 aa15.2■□□□□ 0.02
VPS53-210ENST00000571456 CITED4Q96RK1 184 aa15.2■□□□□ 0.02
VPS53-210ENST00000571456 TRAV8-2A0A0B4J237 113 aa15.19■□□□□ 0.02
VPS53-210ENST00000571456 RBMY1BA6NDE4 496 aaKnown RBP15.19■□□□□ 0.02
VPS53-210ENST00000571456 RBMY1EA6NEQ0 496 aaKnown RBP15.19■□□□□ 0.02
VPS53-210ENST00000571456 H3BQ15 152 aa15.19■□□□□ 0.02
VPS53-210ENST00000571456 RBMY1DP0C7P1 496 aaKnown RBP15.19■□□□□ 0.02
VPS53-210ENST00000571456 STAG3L2P0CL84 134 aa15.19■□□□□ 0.02
VPS53-210ENST00000571456 STAG3L3P0CL85 134 aa15.19■□□□□ 0.02
VPS53-210ENST00000571456 HLA-DRB4P13762 266 aa15.19■□□□□ 0.02
VPS53-210ENST00000571456 PSG3Q16557 428 aa15.19■□□□□ 0.02
VPS53-210ENST00000571456 ZFAND6Q6FIF0 208 aa15.19■□□□□ 0.02
VPS53-210ENST00000571456 MORN3Q6PF18 240 aaPredicted RBP15.19■□□□□ 0.02
VPS53-210ENST00000571456 DPPA3Q6W0C5 159 aa15.19■□□□□ 0.02
VPS53-210ENST00000571456 SAV1Q9H4B6 383 aaPredicted RBP15.19■□□□□ 0.02
VPS53-210ENST00000571456 AAMDCQ9H7C9 122 aa15.19■□□□□ 0.02
VPS53-210ENST00000571456 ZNF586Q9NXT0 402 aa15.19■□□□□ 0.02
VPS53-210ENST00000571456 RFNGQ9Y644 331 aa15.19■□□□□ 0.02
VPS53-210ENST00000571456 HLA-DRB4X5D2U9 266 aa15.19■□□□□ 0.02
VPS53-210ENST00000571456 RYR1P21817 5038 aa15.19■□□□□ 0.02
VPS53-210ENST00000571456 CTXND1A0A1B0GTU2 59 aa15.18■□□□□ 0.02
VPS53-210ENST00000571456 PYYP10082 97 aa15.18■□□□□ 0.02
VPS53-210ENST00000571456 NUTF2P61970 127 aaKnown RBP15.18■□□□□ 0.02
VPS53-210ENST00000571456 UBE2L3P68036 154 aaKnown RBP15.18■□□□□ 0.02
VPS53-210ENST00000571456 C9orf62Q8N4C0 152 aa15.18■□□□□ 0.02
VPS53-210ENST00000571456 RAB24Q969Q5 203 aa15.18■□□□□ 0.02
VPS53-210ENST00000571456 FXYD5Q96DB9 178 aa15.18■□□□□ 0.02
Retrieved 100 of 20,778 RNA–protein pairs in 42.4 ms