RNA–Protein interactions for RNA: ENST00000568784.6

VPS35-210, Transcript of VPS35, retromer complex component, humanhuman

TSL 1 (best)

Gene VPS35, Length 4,017 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-210ENST00000568784 RNASE6Q93091 150 aaKnown RBP11.54□□□□□ -0.56
VPS35-210ENST00000568784 LOC105371242A0A075B767 164 aa11.54□□□□□ -0.56
VPS35-210ENST00000568784 IGKV2-40A0A087WW87 121 aaPredicted RBP11.54□□□□□ -0.56
VPS35-210ENST00000568784 PPIAL4CA0A0B4J2A2 164 aa11.54□□□□□ -0.56
VPS35-210ENST00000568784 IGKV2D-40P01614 121 aaPredicted RBP11.54□□□□□ -0.56
VPS35-210ENST00000568784 PPIAL4GP0DN37 164 aa11.54□□□□□ -0.56
VPS35-210ENST00000568784 FAM169BQ8N8A8 192 aa11.54□□□□□ -0.56
VPS35-210ENST00000568784 DSCAML1Q8TD84 2053 aa11.53□□□□□ -0.56
VPS35-210ENST00000568784 LTAP01374 205 aa11.53□□□□□ -0.56
VPS35-210ENST00000568784 PRSS1P07477 247 aa11.53□□□□□ -0.56
VPS35-210ENST00000568784 RIPPLY3P57055 190 aa11.53□□□□□ -0.56
VPS35-210ENST00000568784 TEX36Q5VZQ5 186 aa11.53□□□□□ -0.56
VPS35-210ENST00000568784 PET117Q6UWS5 81 aa11.53□□□□□ -0.56
VPS35-210ENST00000568784 A0A0G2JNJ9 132 aa11.53□□□□□ -0.56
VPS35-210ENST00000568784 FAM90A27PA6NNH2 459 aa11.53□□□□□ -0.56
VPS35-210ENST00000568784 LYZL1Q6UWQ5 148 aa11.53□□□□□ -0.56
VPS35-210ENST00000568784 Q9UFV3 132 aa11.53□□□□□ -0.56
VPS35-210ENST00000568784 IGHV1-3A0A0C4DH29 117 aa11.53□□□□□ -0.56
VPS35-210ENST00000568784 IGHV2-70DA0A0C4DH43 119 aa11.53□□□□□ -0.56
VPS35-210ENST00000568784 J3KRW8 73 aa11.53□□□□□ -0.56
VPS35-210ENST00000568784 NCOR1P1Q9H4R4 102 aa11.53□□□□□ -0.56
VPS35-210ENST00000568784 MUC6Q6W4X9 2439 aa11.53□□□□□ -0.56
VPS35-210ENST00000568784 TRAV30A0A087WSZ9 112 aa11.52□□□□□ -0.56
VPS35-210ENST00000568784 IGHV3-49A0A0A0MS15 119 aa11.52□□□□□ -0.56
VPS35-210ENST00000568784 IGHV3-66A0A0C4DH42 116 aa11.52□□□□□ -0.56
VPS35-210ENST00000568784 NPIPB5A8MRT5 1133 aa11.52□□□□□ -0.56
VPS35-210ENST00000568784 TAX1BP3O14907 124 aa11.52□□□□□ -0.56
VPS35-210ENST00000568784 CST9LQ9H4G1 147 aa11.52□□□□□ -0.56
VPS35-210ENST00000568784 SOX21Q9Y651 276 aaPredicted RBP11.52□□□□□ -0.56
VPS35-210ENST00000568784 NOTCH3Q9UM47 2321 aa11.52□□□□□ -0.56
VPS35-210ENST00000568784 TNRC18O15417 2968 aaPredicted RBP11.52□□□□□ -0.56
VPS35-210ENST00000568784 LOXL1Q08397 574 aaPredicted RBP11.52□□□□□ -0.57
VPS35-210ENST00000568784 RAI1Q7Z5J4 1906 aaPredicted RBP11.52□□□□□ -0.57
VPS35-210ENST00000568784 TIMM23O14925 209 aa11.52□□□□□ -0.57
VPS35-210ENST00000568784 LINC01560Q8TB33 94 aa11.52□□□□□ -0.57
VPS35-210ENST00000568784 RNF125Q96EQ8 232 aa11.52□□□□□ -0.57
VPS35-210ENST00000568784 SMG1Q96Q15 3661 aaKnown RBP11.52□□□□□ -0.57
VPS35-210ENST00000568784 TRAV8-6A0A0B4J262 113 aa11.51□□□□□ -0.57
VPS35-210ENST00000568784 IGLC1P0CG04 106 aa11.51□□□□□ -0.57
VPS35-210ENST00000568784 RBX1P62877 108 aa11.51□□□□□ -0.57
VPS35-210ENST00000568784 RPL24P83731 157 aaKnown RBP11.51□□□□□ -0.57
VPS35-210ENST00000568784 HIST1H1AQ02539 215 aaPredicted RBP11.51□□□□□ -0.57
VPS35-210ENST00000568784 FAM120AOSQ5T036 256 aa11.51□□□□□ -0.57
VPS35-210ENST00000568784 GAGE12BA1L429 117 aa11.51□□□□□ -0.57
VPS35-210ENST00000568784 MLST8Q9BVC4 326 aa11.51□□□□□ -0.57
VPS35-210ENST00000568784 PRO3102Q9H379 93 aa11.51□□□□□ -0.57
VPS35-210ENST00000568784 PEF1Q9UBV8 284 aaKnown RBP11.51□□□□□ -0.57
VPS35-210ENST00000568784 GCSHP23434 173 aa11.51□□□□□ -0.57
VPS35-210ENST00000568784 TMEM97Q5BJF2 176 aa11.51□□□□□ -0.57
VPS35-210ENST00000568784 EVI2AP22794 236 aa11.51□□□□□ -0.57
VPS35-210ENST00000568784 ASCL5Q7RTU5 278 aa11.51□□□□□ -0.57
VPS35-210ENST00000568784 FAM57AQ8TBR7 257 aa11.51□□□□□ -0.57
VPS35-210ENST00000568784 ZNF414Q96IQ9 312 aa11.51□□□□□ -0.57
VPS35-210ENST00000568784 FCN3O75636 299 aa11.5□□□□□ -0.57
VPS35-210ENST00000568784 TMEM155Q4W5P6 130 aa11.5□□□□□ -0.57
VPS35-210ENST00000568784 PTPRQQ9UMZ3 2332 aa11.5□□□□□ -0.57
VPS35-210ENST00000568784 ZNF785A8K8V0 405 aa11.5□□□□□ -0.57
VPS35-210ENST00000568784 K7ERU9 68 aa11.5□□□□□ -0.57
VPS35-210ENST00000568784 KLRD1Q13241 179 aa11.5□□□□□ -0.57
VPS35-210ENST00000568784 C7orf69Q9H7B7 122 aa11.5□□□□□ -0.57
VPS35-210ENST00000568784 C19orf71A6NCJ1 209 aa11.5□□□□□ -0.57
VPS35-210ENST00000568784 ANKRD39Q53RE8 183 aa11.5□□□□□ -0.57
VPS35-210ENST00000568784 BCL6BQ8N143 479 aaPredicted RBP11.5□□□□□ -0.57
VPS35-210ENST00000568784 TMEM75Q8N9X5 138 aa11.5□□□□□ -0.57
VPS35-210ENST00000568784 KLF12Q9Y4X4 402 aa11.5□□□□□ -0.57
VPS35-210ENST00000568784 OCIAD2Q56VL3 154 aa11.49□□□□□ -0.57
VPS35-210ENST00000568784 SAPCD1Q5SSQ6 148 aa11.49□□□□□ -0.57
VPS35-210ENST00000568784 NEU4Q8WWR8 484 aaPredicted RBP11.49□□□□□ -0.57
VPS35-210ENST00000568784 MEGF9Q9H1U4 602 aa11.49□□□□□ -0.57
VPS35-210ENST00000568784 ZNF492Q9P255 531 aa11.49□□□□□ -0.57
VPS35-210ENST00000568784 FAM231BA6NCW3 169 aa11.49□□□□□ -0.57
VPS35-210ENST00000568784 PRSS22Q9GZN4 317 aa11.49□□□□□ -0.57
VPS35-210ENST00000568784 UFC1Q9Y3C8 167 aa11.49□□□□□ -0.57
VPS35-210ENST00000568784 DMXL1Q9Y485 3027 aa11.49□□□□□ -0.57
VPS35-210ENST00000568784 IGKV1-17P01599 117 aa11.49□□□□□ -0.57
VPS35-210ENST00000568784 MYCNOSP40205 109 aa11.49□□□□□ -0.57
VPS35-210ENST00000568784 SMIM15Q7Z3B0 74 aa11.49□□□□□ -0.57
VPS35-210ENST00000568784 ABHD17AQ96GS6 310 aa11.49□□□□□ -0.57
VPS35-210ENST00000568784 NDFIP1Q9BT67 221 aa11.49□□□□□ -0.57
VPS35-210ENST00000568784 CUL9Q8IWT3 2517 aa11.48□□□□□ -0.57
VPS35-210ENST00000568784 IGFL2Q6UWQ7 119 aa11.48□□□□□ -0.57
VPS35-210ENST00000568784 ORMDL3Q8N138 153 aa11.48□□□□□ -0.57
VPS35-210ENST00000568784 A1L4Q6 167 aa11.48□□□□□ -0.57
VPS35-210ENST00000568784 FOXE3Q13461 319 aa11.48□□□□□ -0.57
VPS35-210ENST00000568784 ZNF747Q9BV97 191 aa11.48□□□□□ -0.57
VPS35-210ENST00000568784 TRBV19A0A075B6N1 114 aa11.48□□□□□ -0.57
VPS35-210ENST00000568784 A6NDN8 102 aa11.48□□□□□ -0.57
VPS35-210ENST00000568784 CD3EP07766 207 aa11.48□□□□□ -0.57
VPS35-210ENST00000568784 BUB1B-PAK6H3BSN5 160 aa11.47□□□□□ -0.57
VPS35-210ENST00000568784 PRR30Q53SZ7 412 aaPredicted RBP11.47□□□□□ -0.57
VPS35-210ENST00000568784 CT83Q5H943 113 aa11.47□□□□□ -0.57
VPS35-210ENST00000568784 DEFB125Q8N687 156 aa11.47□□□□□ -0.57
VPS35-210ENST00000568784 SCRT2Q9NQ03 307 aa11.47□□□□□ -0.57
VPS35-210ENST00000568784 HIF1ANQ9NWT6 349 aa11.47□□□□□ -0.57
VPS35-210ENST00000568784 RABAC1Q9UI14 185 aa11.47□□□□□ -0.57
VPS35-210ENST00000568784 E7EQL1 145 aa11.47□□□□□ -0.57
VPS35-210ENST00000568784 SAP30O75446 220 aa11.47□□□□□ -0.57
VPS35-210ENST00000568784 HLA-DMBP28068 263 aa11.47□□□□□ -0.57
VPS35-210ENST00000568784 PSG3Q16557 428 aa11.47□□□□□ -0.57
VPS35-210ENST00000568784 GTF2H5Q6ZYL4 71 aa11.47□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 28 ms