RNA–Protein interactions for RNA: ENST00000568034.1

COMMD4-222, Transcript of COMM domain containing 4, human

TSL 5

Gene COMMD4, Length 1,085 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
COMMD4-222	ENST00000568034	TMEM41B	Q5BJD5	291 aa		13.33	□□□□□ -0.28
COMMD4-222	ENST00000568034	SSX7	Q7RTT5	188 aa		13.33	□□□□□ -0.28
COMMD4-222	ENST00000568034	BAP18	Q8IXM2	172 aa		13.33	□□□□□ -0.28
COMMD4-222	ENST00000568034	SAT2	Q96F10	170 aa	Predicted RBP	13.33	□□□□□ -0.28
COMMD4-222	ENST00000568034	SRD5A3	Q9H8P0	318 aa		13.33	□□□□□ -0.28
COMMD4-222	ENST00000568034	SEC11B	P0C7V7	166 aa		13.32	□□□□□ -0.28
COMMD4-222	ENST00000568034	TPT1	P13693	172 aa	Known RBP	13.32	□□□□□ -0.28
COMMD4-222	ENST00000568034	CDC34	P49427	236 aa	Predicted RBP	13.32	□□□□□ -0.28
COMMD4-222	ENST00000568034	CMC4	P56277	68 aa	Predicted RBP	13.32	□□□□□ -0.28
COMMD4-222	ENST00000568034	ZNF726P1	Q15940	193 aa		13.32	□□□□□ -0.28
COMMD4-222	ENST00000568034	PSMG4	Q5JS54	123 aa		13.32	□□□□□ -0.28
COMMD4-222	ENST00000568034	SAMD13	Q5VXD3	122 aa		13.32	□□□□□ -0.28
COMMD4-222	ENST00000568034	LINC00322	Q6ZN03	302 aa	Predicted RBP	13.32	□□□□□ -0.28
COMMD4-222	ENST00000568034	FXYD5	Q96DB9	178 aa		13.32	□□□□□ -0.28
COMMD4-222	ENST00000568034	C16orf92	Q96LL3	132 aa		13.32	□□□□□ -0.28
COMMD4-222	ENST00000568034	OR51M1	Q9H341	326 aa		13.32	□□□□□ -0.28
COMMD4-222	ENST00000568034	RBMY1B	A6NDE4	496 aa	Known RBP	13.31	□□□□□ -0.28
COMMD4-222	ENST00000568034	RBMY1E	A6NEQ0	496 aa	Known RBP	13.31	□□□□□ -0.28
COMMD4-222	ENST00000568034	HMGB3	O15347	200 aa	Known RBP	13.31	□□□□□ -0.28
COMMD4-222	ENST00000568034	RBMY1D	P0C7P1	496 aa	Known RBP	13.31	□□□□□ -0.28
COMMD4-222	ENST00000568034	HIST1H1E	P10412	219 aa	Known RBP	13.31	□□□□□ -0.28
COMMD4-222	ENST00000568034	HLA-DMB	P28068	263 aa		13.31	□□□□□ -0.28
COMMD4-222	ENST00000568034	SNRPD3	P62318	126 aa	Known RBP	13.31	□□□□□ -0.28
COMMD4-222	ENST00000568034	EIF5A	P63241	154 aa	Known RBP	13.31	□□□□□ -0.28
COMMD4-222	ENST00000568034	IGFL4	Q6B9Z1	124 aa		13.31	□□□□□ -0.28
COMMD4-222	ENST00000568034	LCN15	Q6UWW0	184 aa		13.31	□□□□□ -0.28
COMMD4-222	ENST00000568034	SLC51B	Q86UW2	128 aa		13.31	□□□□□ -0.28
COMMD4-222	ENST00000568034	RAB24	Q969Q5	203 aa		13.31	□□□□□ -0.28
COMMD4-222	ENST00000568034	PAXX	Q9BUH6	204 aa		13.31	□□□□□ -0.28
COMMD4-222	ENST00000568034	ZNF331	Q9NQX6	463 aa	Predicted RBP	13.31	□□□□□ -0.28
COMMD4-222	ENST00000568034	TRBV19	A0A075B6N1	114 aa		13.3	□□□□□ -0.28
COMMD4-222	ENST00000568034		A0A1W2PPV4	95 aa		13.3	□□□□□ -0.28
COMMD4-222	ENST00000568034	NDUFB4	O95168	129 aa		13.3	□□□□□ -0.28
COMMD4-222	ENST00000568034	FRMD6-AS1	P0C7T7	363 aa		13.3	□□□□□ -0.28
COMMD4-222	ENST00000568034	STAG3L2	P0CL84	134 aa		13.3	□□□□□ -0.28
COMMD4-222	ENST00000568034	STAG3L3	P0CL85	134 aa		13.3	□□□□□ -0.28
COMMD4-222	ENST00000568034	ID1	P41134	155 aa		13.3	□□□□□ -0.28
COMMD4-222	ENST00000568034	TAS2R45	P59539	299 aa		13.3	□□□□□ -0.28
COMMD4-222	ENST00000568034	DEFB1	P60022	68 aa		13.3	□□□□□ -0.28
COMMD4-222	ENST00000568034	KHDC3L	Q587J8	217 aa		13.3	□□□□□ -0.28
COMMD4-222	ENST00000568034	DEFB121	Q5J5C9	76 aa		13.3	□□□□□ -0.28
COMMD4-222	ENST00000568034	AKR1C8P	Q5T2L2	129 aa		13.3	□□□□□ -0.28
COMMD4-222	ENST00000568034	RNF182	Q8N6D2	247 aa		13.3	□□□□□ -0.28
COMMD4-222	ENST00000568034	TMED6	Q8WW62	240 aa		13.3	□□□□□ -0.28
COMMD4-222	ENST00000568034	BOLA1	Q9Y3E2	137 aa		13.3	□□□□□ -0.28
COMMD4-222	ENST00000568034	AGRN	O00468	2067 aa		13.29	□□□□□ -0.28
COMMD4-222	ENST00000568034	OR7C2	O60412	319 aa		13.29	□□□□□ -0.28
COMMD4-222	ENST00000568034	ZNF253	O75346	499 aa		13.29	□□□□□ -0.28
COMMD4-222	ENST00000568034	OR10J4	P0C629	311 aa		13.29	□□□□□ -0.28
COMMD4-222	ENST00000568034	GUK1	Q16774	197 aa		13.29	□□□□□ -0.28
COMMD4-222	ENST00000568034	RNF141	Q8WVD5	230 aa		13.29	□□□□□ -0.28
COMMD4-222	ENST00000568034	LINC00052	Q96N35	136 aa		13.29	□□□□□ -0.28
COMMD4-222	ENST00000568034	SLC50A1	Q9BRV3	221 aa		13.29	□□□□□ -0.28
COMMD4-222	ENST00000568034	ACTR3C	Q9C0K3	210 aa	Predicted RBP	13.29	□□□□□ -0.28
COMMD4-222	ENST00000568034	KNCN	A6PVL3	124 aa		13.28	□□□□□ -0.28
COMMD4-222	ENST00000568034	BOLA2-SMG1P6	H3BVE0	249 aa		13.28	□□□□□ -0.28
COMMD4-222	ENST00000568034	UBE2L3	P68036	154 aa	Known RBP	13.28	□□□□□ -0.28
COMMD4-222	ENST00000568034	PDE6H	Q13956	83 aa		13.28	□□□□□ -0.28
COMMD4-222	ENST00000568034	GDF5OS	Q5U4N7	250 aa		13.28	□□□□□ -0.28
COMMD4-222	ENST00000568034	PQLC2	Q6ZP29	291 aa		13.28	□□□□□ -0.28
COMMD4-222	ENST00000568034	TUBA4B	Q9H853	241 aa		13.28	□□□□□ -0.28
COMMD4-222	ENST00000568034	CTXND1	A0A1B0GTU2	59 aa		13.27	□□□□□ -0.29
COMMD4-222	ENST00000568034	NBEAP1	P0C6P0	100 aa		13.27	□□□□□ -0.29
COMMD4-222	ENST00000568034	ARL14EPL	P0DKL9	152 aa		13.27	□□□□□ -0.29
COMMD4-222	ENST00000568034	FHIT	P49789	147 aa		13.27	□□□□□ -0.29
COMMD4-222	ENST00000568034	BLNK	Q8WV28	456 aa		13.27	□□□□□ -0.29
COMMD4-222	ENST00000568034	PHYHIPL	Q96FC7	376 aa		13.27	□□□□□ -0.29
COMMD4-222	ENST00000568034		F6UB75	175 aa		13.26	□□□□□ -0.29
COMMD4-222	ENST00000568034	PSG3	Q16557	428 aa		13.26	□□□□□ -0.29
COMMD4-222	ENST00000568034	SUN5	Q8TC36	379 aa		13.26	□□□□□ -0.29
COMMD4-222	ENST00000568034	LRRC20	Q8TCA0	184 aa		13.26	□□□□□ -0.29
COMMD4-222	ENST00000568034	B9D2	Q9BPU9	175 aa		13.26	□□□□□ -0.29
COMMD4-222	ENST00000568034	SAV1	Q9H4B6	383 aa	Predicted RBP	13.26	□□□□□ -0.29
COMMD4-222	ENST00000568034	UMAD1	C9J7I0	102 aa		13.25	□□□□□ -0.29
COMMD4-222	ENST00000568034	HLA-DRB4	P13762	266 aa		13.25	□□□□□ -0.29
COMMD4-222	ENST00000568034	C4BPB	P20851	252 aa		13.25	□□□□□ -0.29
COMMD4-222	ENST00000568034	ACTL10	Q5JWF8	245 aa		13.25	□□□□□ -0.29
COMMD4-222	ENST00000568034	FOXI2	Q6ZQN5	318 aa		13.25	□□□□□ -0.29
COMMD4-222	ENST00000568034	TRPT1	Q86TN4	253 aa	Known RBP	13.25	□□□□□ -0.29
COMMD4-222	ENST00000568034	HLA-DRB4	X5D2U9	266 aa		13.25	□□□□□ -0.29
COMMD4-222	ENST00000568034	LOC102724200	A0A096LPH7	203 aa	Predicted RBP	13.24	□□□□□ -0.29
COMMD4-222	ENST00000568034		H3BMM0	161 aa		13.24	□□□□□ -0.29
COMMD4-222	ENST00000568034	PRB4	P10163	310 aa	Predicted RBP	13.24	□□□□□ -0.29
COMMD4-222	ENST00000568034	GCHFR	P30047	84 aa		13.24	□□□□□ -0.29
COMMD4-222	ENST00000568034	SBSPON	Q8IVN8	264 aa		13.24	□□□□□ -0.29
COMMD4-222	ENST00000568034	ZNF738	Q8NE65	137 aa		13.24	□□□□□ -0.29
COMMD4-222	ENST00000568034		A0A0J9YX75	114 aa		13.23	□□□□□ -0.29
COMMD4-222	ENST00000568034	ZNF705F	A8MVS1	300 aa	Predicted RBP	13.23	□□□□□ -0.29
COMMD4-222	ENST00000568034	PRAC2	D3DTV9	90 aa		13.23	□□□□□ -0.29
COMMD4-222	ENST00000568034		M0R3E3	92 aa		13.23	□□□□□ -0.29
COMMD4-222	ENST00000568034	RPL35A	P18077	110 aa	Known RBP	13.23	□□□□□ -0.29
COMMD4-222	ENST00000568034	PSG9	Q00887	426 aa		13.23	□□□□□ -0.29
COMMD4-222	ENST00000568034	HAGH	Q16775	308 aa		13.23	□□□□□ -0.29
COMMD4-222	ENST00000568034	EXOC3-AS1	Q8N2X6	119 aa		13.23	□□□□□ -0.29
COMMD4-222	ENST00000568034	CLEC5A	Q9NY25	188 aa		13.23	□□□□□ -0.29
COMMD4-222	ENST00000568034	MAP1LC3B2	A6NCE7	125 aa		13.22	□□□□□ -0.29
COMMD4-222	ENST00000568034		A8MTW9	85 aa		13.22	□□□□□ -0.29
COMMD4-222	ENST00000568034	CXorf1	O96002	111 aa		13.22	□□□□□ -0.29
COMMD4-222	ENST00000568034	SULT1A2	P50226	295 aa		13.22	□□□□□ -0.29
COMMD4-222	ENST00000568034	FGF8	P55075	233 aa	Predicted RBP	13.22	□□□□□ -0.29

Retrieved 100 of 20,778 RNA–protein pairs in 88 ms