RNA–Protein interactions for RNA: ENST00000566926.1

CLK3-218, Transcript of CDC like kinase 3, humanhuman

TSL 5

Gene CLK3, Length 646 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-218ENST00000566926 GPR82Q96P67 336 aa10.09□□□□□ -0.79
CLK3-218ENST00000566926 METTL26Q96S19 204 aa10.09□□□□□ -0.79
CLK3-218ENST00000566926 NKX6-2Q9C056 277 aaPredicted RBP10.09□□□□□ -0.79
CLK3-218ENST00000566926 EIF5A2Q9GZV4 153 aaKnown RBP10.09□□□□□ -0.79
CLK3-218ENST00000566926 TMEM14CQ9P0S9 112 aa10.09□□□□□ -0.79
CLK3-218ENST00000566926 H3BRN7 92 aa10.08□□□□□ -0.8
CLK3-218ENST00000566926 CD5P06127 495 aa10.08□□□□□ -0.8
CLK3-218ENST00000566926 RPL7P18124 248 aaKnown RBP10.08□□□□□ -0.8
CLK3-218ENST00000566926 S100A1P23297 94 aa10.08□□□□□ -0.8
CLK3-218ENST00000566926 GCHFRP30047 84 aa10.08□□□□□ -0.8
CLK3-218ENST00000566926 FGF8P55075 233 aaPredicted RBP10.08□□□□□ -0.8
CLK3-218ENST00000566926 USF2Q15853 346 aaPredicted RBP10.08□□□□□ -0.8
CLK3-218ENST00000566926 ZNF506Q5JVG8 444 aa10.08□□□□□ -0.8
CLK3-218ENST00000566926 C1orf194Q5T5A4 169 aa10.08□□□□□ -0.8
CLK3-218ENST00000566926 BPIFA4PQ86YQ2 179 aa10.08□□□□□ -0.8
CLK3-218ENST00000566926 IQCF2Q8IXL9 164 aa10.08□□□□□ -0.8
CLK3-218ENST00000566926 SPAG8Q99932 426 aaPredicted RBP10.08□□□□□ -0.8
CLK3-218ENST00000566926 SLC25A2Q9BXI2 301 aa10.08□□□□□ -0.8
CLK3-218ENST00000566926 ZFAND3Q9H8U3 227 aa10.08□□□□□ -0.8
CLK3-218ENST00000566926 GNG13Q9P2W3 67 aa10.08□□□□□ -0.8
CLK3-218ENST00000566926 VAX2Q9UIW0 290 aa10.08□□□□□ -0.8
CLK3-218ENST00000566926 A0A1B0GV50 99 aa10.07□□□□□ -0.8
CLK3-218ENST00000566926 OR11H12B2RN74 326 aa10.07□□□□□ -0.8
CLK3-218ENST00000566926 KRBOX1C9JBD0 128 aa10.07□□□□□ -0.8
CLK3-218ENST00000566926 HMGB3O15347 200 aaKnown RBP10.07□□□□□ -0.8
CLK3-218ENST00000566926 CD7P09564 240 aa10.07□□□□□ -0.8
CLK3-218ENST00000566926 NPPCP23582 126 aa10.07□□□□□ -0.8
CLK3-218ENST00000566926 MEOX2P50222 304 aa10.07□□□□□ -0.8
CLK3-218ENST00000566926 UBE2L3P68036 154 aaKnown RBP10.07□□□□□ -0.8
CLK3-218ENST00000566926 SPATA31B1PQ5VZV4 182 aa10.07□□□□□ -0.8
CLK3-218ENST00000566926 FAM167A-AS1Q96KT0 104 aa10.07□□□□□ -0.8
CLK3-218ENST00000566926 WWC2-AS2Q96NR7 200 aa10.07□□□□□ -0.8
CLK3-218ENST00000566926 UHRF2Q96PU4 802 aa10.07□□□□□ -0.8
CLK3-218ENST00000566926 CITED4Q96RK1 184 aa10.07□□□□□ -0.8
CLK3-218ENST00000566926 TCEAL7Q9BRU2 100 aa10.07□□□□□ -0.8
CLK3-218ENST00000566926 PAXXQ9BUH6 204 aa10.07□□□□□ -0.8
CLK3-218ENST00000566926 OR51M1Q9H341 326 aa10.07□□□□□ -0.8
CLK3-218ENST00000566926 SMPXQ9UHP9 88 aa10.07□□□□□ -0.8
CLK3-218ENST00000566926 DNAH9Q9NYC9 4486 aa10.06□□□□□ -0.8
CLK3-218ENST00000566926 IGHV7-4-1A0A0J9YVY3 117 aa10.06□□□□□ -0.8
CLK3-218ENST00000566926 LOC102723971A0A1B0GUV8 181 aa10.06□□□□□ -0.8
CLK3-218ENST00000566926 A0A1W2PS18 150 aa10.06□□□□□ -0.8
CLK3-218ENST00000566926 ZNF98A6NK75 572 aa10.06□□□□□ -0.8
CLK3-218ENST00000566926 TSPAN4O14817 238 aa10.06□□□□□ -0.8
CLK3-218ENST00000566926 ZNF207O43670 478 aaKnown RBP10.06□□□□□ -0.8
CLK3-218ENST00000566926 ATP6V1G1O75348 118 aa10.06□□□□□ -0.8
CLK3-218ENST00000566926 CRYBB3P26998 211 aa10.06□□□□□ -0.8
CLK3-218ENST00000566926 CCL20P78556 96 aa10.06□□□□□ -0.8
CLK3-218ENST00000566926 MEF2BQ02080 365 aaPredicted RBP10.06□□□□□ -0.8
CLK3-218ENST00000566926 TOR2AQ5JU69 321 aa10.06□□□□□ -0.8
CLK3-218ENST00000566926 GRAMD2BQ96HH9 432 aa10.06□□□□□ -0.8
CLK3-218ENST00000566926 TMEM231Q9H6L2 316 aa10.06□□□□□ -0.8
CLK3-218ENST00000566926 IGHV3OR16-8A0A075B7F1 116 aa10.05□□□□□ -0.8
CLK3-218ENST00000566926 A0A1W2PRE2 83 aa10.05□□□□□ -0.8
CLK3-218ENST00000566926 CHEK1O14757 476 aa10.05□□□□□ -0.8
CLK3-218ENST00000566926 PDE6DO43924 150 aa10.05□□□□□ -0.8
CLK3-218ENST00000566926 RHPN1-AS1Q9BWJ2 59 aa10.05□□□□□ -0.8
CLK3-218ENST00000566926 SCRT1Q9BWW7 348 aa10.05□□□□□ -0.8
CLK3-218ENST00000566926 TREM1Q9NP99 234 aa10.05□□□□□ -0.8
CLK3-218ENST00000566926 SELENOKQ9Y6D0 94 aa10.05□□□□□ -0.8
CLK3-218ENST00000566926 OR4C46A6NHA9 309 aa10.04□□□□□ -0.8
CLK3-218ENST00000566926 TMEM250H0YL14 139 aa10.04□□□□□ -0.8
CLK3-218ENST00000566926 HIST1H1EP10412 219 aaKnown RBP10.04□□□□□ -0.8
CLK3-218ENST00000566926 CMC4P56277 68 aaPredicted RBP10.04□□□□□ -0.8
CLK3-218ENST00000566926 PAFAH1B2P68402 229 aa10.04□□□□□ -0.8
CLK3-218ENST00000566926 PDE6HQ13956 83 aa10.04□□□□□ -0.8
CLK3-218ENST00000566926 HAGHQ16775 308 aa10.04□□□□□ -0.8
CLK3-218ENST00000566926 MORN5Q5VZ52 161 aa10.04□□□□□ -0.8
CLK3-218ENST00000566926 OR8I2Q8N0Y5 310 aa10.04□□□□□ -0.8
CLK3-218ENST00000566926 DEFB125Q8N687 156 aa10.04□□□□□ -0.8
CLK3-218ENST00000566926 FXYD5Q96DB9 178 aa10.04□□□□□ -0.8
CLK3-218ENST00000566926 RCHY1Q96PM5 261 aa10.04□□□□□ -0.8
CLK3-218ENST00000566926 SPATA25Q9BR10 227 aa10.04□□□□□ -0.8
CLK3-218ENST00000566926 TM2D3Q9BRN9 247 aa10.04□□□□□ -0.8
CLK3-218ENST00000566926 SLC35B3Q9H1N7 401 aa10.04□□□□□ -0.8
CLK3-218ENST00000566926 SRD5A3Q9H8P0 318 aa10.04□□□□□ -0.8
CLK3-218ENST00000566926 U3KQE9 123 aa10.04□□□□□ -0.8
CLK3-218ENST00000566926 TRAV5A0A0B4J249 113 aa10.03□□□□□ -0.8
CLK3-218ENST00000566926 F6UZH7 168 aa10.03□□□□□ -0.8
CLK3-218ENST00000566926 BUB3O43684 328 aa10.03□□□□□ -0.8
CLK3-218ENST00000566926 NBEAP1P0C6P0 100 aa10.03□□□□□ -0.8
CLK3-218ENST00000566926 GALR1P47211 349 aa10.03□□□□□ -0.8
CLK3-218ENST00000566926 ICAM4Q14773 271 aa10.03□□□□□ -0.8
CLK3-218ENST00000566926 LYPD1Q8N2G4 141 aa10.03□□□□□ -0.8
CLK3-218ENST00000566926 ZNF503Q96F45 646 aa10.03□□□□□ -0.8
CLK3-218ENST00000566926 ZNF414Q96IQ9 312 aa10.03□□□□□ -0.8
CLK3-218ENST00000566926 FAM110AQ9BQ89 295 aa10.03□□□□□ -0.8
CLK3-218ENST00000566926 TMPRSS5Q9H3S3 457 aa10.03□□□□□ -0.8
CLK3-218ENST00000566926 TMEM218A2RU14 115 aa10.02□□□□□ -0.81
CLK3-218ENST00000566926 FAM74A7A6NL05 159 aa10.02□□□□□ -0.81
CLK3-218ENST00000566926 C11orf94C9JXX5 98 aa10.02□□□□□ -0.81
CLK3-218ENST00000566926 PAGE4O60829 102 aa10.02□□□□□ -0.81
CLK3-218ENST00000566926 ZNF253O75346 499 aa10.02□□□□□ -0.81
CLK3-218ENST00000566926 OR10J4P0C629 311 aa10.02□□□□□ -0.81
CLK3-218ENST00000566926 IGLC2P0DOY2 106 aa10.02□□□□□ -0.81
CLK3-218ENST00000566926 SAMD13Q5VXD3 122 aa10.02□□□□□ -0.81
CLK3-218ENST00000566926 CST9LP1Q5W188 147 aa10.02□□□□□ -0.81
CLK3-218ENST00000566926 LINC00322Q6ZN03 302 aaPredicted RBP10.02□□□□□ -0.81
CLK3-218ENST00000566926 RPUSD4Q96CM3 377 aaKnown RBP10.02□□□□□ -0.81
CLK3-218ENST00000566926 RARRES2Q99969 163 aa10.02□□□□□ -0.81
Retrieved 100 of 20,778 RNA–protein pairs in 35.2 ms