RNA–Protein interactions for RNA: ENST00000566078.1

CTCF-203, Transcript of CCCTC-binding factor, humanhuman

TSL 2

Gene CTCF, Length 1,627 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTCF-203ENST00000566078 CYB561D1Q8N8Q1 229 aa23.24■■□□□ 1.31
CTCF-203ENST00000566078 TENM1Q9UKZ4 2725 aa23.23■■□□□ 1.31
CTCF-203ENST00000566078 ZNF785A8K8V0 405 aa23.23■■□□□ 1.31
CTCF-203ENST00000566078 LINC00052Q96N35 136 aa23.23■■□□□ 1.31
CTCF-203ENST00000566078 C2orf70A6NJV1 201 aa23.22■■□□□ 1.31
CTCF-203ENST00000566078 SLC17A3O00476 420 aa23.22■■□□□ 1.31
CTCF-203ENST00000566078 NDUFB4O95168 129 aa23.22■■□□□ 1.31
CTCF-203ENST00000566078 BMI1P35226 326 aa23.22■■□□□ 1.31
CTCF-203ENST00000566078 ELOVL1Q9BW60 279 aa23.22■■□□□ 1.31
CTCF-203ENST00000566078 Q9H3A6 140 aa23.22■■□□□ 1.31
CTCF-203ENST00000566078 PEMTQ9UBM1 199 aa23.22■■□□□ 1.31
CTCF-203ENST00000566078 A0A087X0K7 114 aa23.22■■□□□ 1.31
CTCF-203ENST00000566078 PDE6DO43924 150 aa23.22■■□□□ 1.31
CTCF-203ENST00000566078 SUMO1P63165 101 aaKnown RBP23.22■■□□□ 1.31
CTCF-203ENST00000566078 OR9G4Q8NGQ1 327 aa23.22■■□□□ 1.31
CTCF-203ENST00000566078 NKX6-2Q9C056 277 aaPredicted RBP23.22■■□□□ 1.31
CTCF-203ENST00000566078 PDE6HQ13956 83 aa23.21■■□□□ 1.31
CTCF-203ENST00000566078 CCDC28AQ8IWP9 274 aa23.21■■□□□ 1.31
CTCF-203ENST00000566078 ATRQ13535 2644 aa23.2■■□□□ 1.3
CTCF-203ENST00000566078 F6UZH7 168 aa23.2■■□□□ 1.3
CTCF-203ENST00000566078 SELENOKQ9Y6D0 94 aa23.2■■□□□ 1.3
CTCF-203ENST00000566078 KRBOX1C9JBD0 128 aa23.19■■□□□ 1.3
CTCF-203ENST00000566078 NDUFS6O75380 124 aaKnown RBP23.19■■□□□ 1.3
CTCF-203ENST00000566078 ADCYAP1P18509 176 aa23.19■■□□□ 1.3
CTCF-203ENST00000566078 CBLN1P23435 193 aa23.19■■□□□ 1.3
CTCF-203ENST00000566078 MYCNOSP40205 109 aa23.19■■□□□ 1.3
CTCF-203ENST00000566078 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa23.19■■□□□ 1.3
CTCF-203ENST00000566078 SCO2A0A1W2PP80 73 aa23.19■■□□□ 1.3
CTCF-203ENST00000566078 F8W036 122 aa23.19■■□□□ 1.3
CTCF-203ENST00000566078 TMEM250H0YL14 139 aa23.19■■□□□ 1.3
CTCF-203ENST00000566078 FOLR2P14207 255 aa23.19■■□□□ 1.3
CTCF-203ENST00000566078 S100A1P23297 94 aa23.19■■□□□ 1.3
CTCF-203ENST00000566078 EXOC3-AS1Q8N2X6 119 aa23.19■■□□□ 1.3
CTCF-203ENST00000566078 OTORQ9NRC9 128 aa23.19■■□□□ 1.3
CTCF-203ENST00000566078 PGPA6NDG6 321 aa23.18■■□□□ 1.3
CTCF-203ENST00000566078 CITED1Q99966 193 aa23.18■■□□□ 1.3
CTCF-203ENST00000566078 HELTA6NFD8 242 aa23.17■■□□□ 1.3
CTCF-203ENST00000566078 M0QZ24 198 aa23.17■■□□□ 1.3
CTCF-203ENST00000566078 SLC25A5P05141 298 aaKnown RBP23.16■■□□□ 1.3
CTCF-203ENST00000566078 RPL11P62913 178 aaKnown RBP23.16■■□□□ 1.3
CTCF-203ENST00000566078 PSG9Q00887 426 aa23.16■■□□□ 1.3
CTCF-203ENST00000566078 TCF24Q7RTU0 167 aa23.16■■□□□ 1.3
CTCF-203ENST00000566078 LYPD1Q8N2G4 141 aa23.16■■□□□ 1.3
CTCF-203ENST00000566078 ZNF253O75346 499 aa23.15■■□□□ 1.3
CTCF-203ENST00000566078 MEOX2P50222 304 aa23.15■■□□□ 1.3
CTCF-203ENST00000566078 SOHLH1Q5JUK2 328 aa23.15■■□□□ 1.3
CTCF-203ENST00000566078 FAM90A2PQ658T7 463 aa23.15■■□□□ 1.3
CTCF-203ENST00000566078 ADAMTSL5Q6ZMM2 481 aa23.15■■□□□ 1.3
CTCF-203ENST00000566078 RPUSD4Q96CM3 377 aaKnown RBP23.15■■□□□ 1.3
CTCF-203ENST00000566078 SEC11CQ9BY50 192 aa23.15■■□□□ 1.3
CTCF-203ENST00000566078 AAMDCQ9H7C9 122 aa23.15■■□□□ 1.3
CTCF-203ENST00000566078 OVOL1O14753 267 aa23.14■■□□□ 1.29
CTCF-203ENST00000566078 GNG5P63218 68 aa23.14■■□□□ 1.29
CTCF-203ENST00000566078 C11orf52Q96A22 123 aa23.14■■□□□ 1.29
CTCF-203ENST00000566078 MLXQ9UH92 298 aa23.14■■□□□ 1.29
CTCF-203ENST00000566078 CSN3P07498 182 aa23.13■■□□□ 1.29
CTCF-203ENST00000566078 C5orf17Q8NAS9 161 aa23.13■■□□□ 1.29
CTCF-203ENST00000566078 SLC50A1Q9BRV3 221 aa23.13■■□□□ 1.29
CTCF-203ENST00000566078 ZNF331Q9NQX6 463 aaPredicted RBP23.13■■□□□ 1.29
CTCF-203ENST00000566078 RPH3ALQ9UNE2 315 aa23.13■■□□□ 1.29
CTCF-203ENST00000566078 IGKV3-7A0A075B6H7 116 aa23.12■■□□□ 1.29
CTCF-203ENST00000566078 ZNF674Q2M3X9 581 aa23.12■■□□□ 1.29
CTCF-203ENST00000566078 TCEAL7Q9BRU2 100 aa23.12■■□□□ 1.29
CTCF-203ENST00000566078 PARLQ9H300 379 aa23.12■■□□□ 1.29
CTCF-203ENST00000566078 IGFL4Q6B9Z1 124 aa23.11■■□□□ 1.29
CTCF-203ENST00000566078 CMTM2Q8TAZ6 248 aa23.11■■□□□ 1.29
CTCF-203ENST00000566078 NRN1Q9NPD7 142 aa23.11■■□□□ 1.29
CTCF-203ENST00000566078 C10orf91Q5T1B1 145 aa23.11■■□□□ 1.29
CTCF-203ENST00000566078 DERL1Q9BUN8 251 aa23.11■■□□□ 1.29
CTCF-203ENST00000566078 EPDR1Q9UM22 224 aa23.11■■□□□ 1.29
CTCF-203ENST00000566078 PEX7O00628 323 aa23.1■■□□□ 1.29
CTCF-203ENST00000566078 PF4P02776 101 aa23.1■■□□□ 1.29
CTCF-203ENST00000566078 FBN1P35555 2871 aaKnown RBP23.09■■□□□ 1.29
CTCF-203ENST00000566078 HLA-DMBP28068 263 aa23.09■■□□□ 1.29
CTCF-203ENST00000566078 C16orf92Q96LL3 132 aa23.09■■□□□ 1.29
CTCF-203ENST00000566078 CARHSP1Q9Y2V2 147 aaKnown RBP23.09■■□□□ 1.29
CTCF-203ENST00000566078 M0R3E3 92 aa23.08■■□□□ 1.29
CTCF-203ENST00000566078 DYNLRB2Q8TF09 96 aa23.08■■□□□ 1.29
CTCF-203ENST00000566078 HIST1H2BAQ96A08 127 aa23.08■■□□□ 1.29
CTCF-203ENST00000566078 SMIM7Q9BQ49 75 aa23.08■■□□□ 1.29
CTCF-203ENST00000566078 TRAV8-2A0A0B4J237 113 aa23.08■■□□□ 1.28
CTCF-203ENST00000566078 ZNF727A8MUV8 499 aa23.08■■□□□ 1.28
CTCF-203ENST00000566078 APOC3P02656 99 aa23.08■■□□□ 1.28
CTCF-203ENST00000566078 AKR1C3P42330 323 aa23.08■■□□□ 1.28
CTCF-203ENST00000566078 RNF182Q8N6D2 247 aa23.08■■□□□ 1.28
CTCF-203ENST00000566078 C2CD4CQ8TF44 421 aa23.08■■□□□ 1.28
CTCF-203ENST00000566078 GBGT1Q8N5D6 347 aa23.07■■□□□ 1.28
CTCF-203ENST00000566078 ATG101Q9BSB4 218 aa23.07■■□□□ 1.28
CTCF-203ENST00000566078 SOCS3O14543 225 aa23.06■■□□□ 1.28
CTCF-203ENST00000566078 TCRAP04437 139 aa23.06■■□□□ 1.28
CTCF-203ENST00000566078 PRB4P10163 310 aaPredicted RBP23.05■■□□□ 1.28
CTCF-203ENST00000566078 MS4A6AQ9H2W1 248 aa23.05■■□□□ 1.28
CTCF-203ENST00000566078 RPL35P42766 123 aaKnown RBP23.04■■□□□ 1.28
CTCF-203ENST00000566078 CSN1S1P47710 185 aa23.04■■□□□ 1.28
CTCF-203ENST00000566078 GUCA2BQ16661 112 aa23.04■■□□□ 1.28
CTCF-203ENST00000566078 FAM74A3Q4VXF1 159 aa23.04■■□□□ 1.28
CTCF-203ENST00000566078 NIPSNAP3BQ9BS92 247 aa23.04■■□□□ 1.28
CTCF-203ENST00000566078 CNN1P51911 297 aaKnown RBP23.04■■□□□ 1.28
CTCF-203ENST00000566078 GOLT1AQ6ZVE7 132 aa23.04■■□□□ 1.28
CTCF-203ENST00000566078 TMEM158Q8WZ71 300 aa23.04■■□□□ 1.28
Retrieved 100 of 20,778 RNA–protein pairs in 28.6 ms