RNA–Protein interactions for RNA: ENST00000564574.5

CLN3-212, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,159 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-212ENST00000564574 GBGT1Q8N5D6 347 aa15.47■□□□□ 0.07
CLN3-212ENST00000564574 ZNF680Q8NEM1 530 aa15.47■□□□□ 0.07
CLN3-212ENST00000564574 FXYD5Q96DB9 178 aa15.47■□□□□ 0.07
CLN3-212ENST00000564574 C17orf77Q96MU5 243 aa15.47■□□□□ 0.07
CLN3-212ENST00000564574 SLC50A1Q9BRV3 221 aa15.47■□□□□ 0.07
CLN3-212ENST00000564574 ZNF705EA8MWA4 302 aaPredicted RBP15.46■□□□□ 0.07
CLN3-212ENST00000564574 G3V4G9 280 aa15.46■□□□□ 0.07
CLN3-212ENST00000564574 H3BQ15 152 aa15.46■□□□□ 0.07
CLN3-212ENST00000564574 NBEAP1P0C6P0 100 aa15.46■□□□□ 0.07
CLN3-212ENST00000564574 GCHFRP30047 84 aa15.46■□□□□ 0.07
CLN3-212ENST00000564574 BLOC1S1P78537 153 aa15.46■□□□□ 0.07
CLN3-212ENST00000564574 BEAN1Q3B7T3 259 aa15.46■□□□□ 0.07
CLN3-212ENST00000564574 SAT2Q96F10 170 aaPredicted RBP15.46■□□□□ 0.07
CLN3-212ENST00000564574 TMEM167BQ9NRX6 74 aa15.46■□□□□ 0.07
CLN3-212ENST00000564574 ZNF586Q9NXT0 402 aa15.46■□□□□ 0.07
CLN3-212ENST00000564574 UBQLN2Q9UHD9 624 aa15.46■□□□□ 0.07
CLN3-212ENST00000564574 ZNF256Q9Y2P7 627 aaPredicted RBP15.46■□□□□ 0.07
CLN3-212ENST00000564574 SORL1Q92673 2214 aa15.45■□□□□ 0.06
CLN3-212ENST00000564574 TRBV19A0A075B6N1 114 aa15.45■□□□□ 0.06
CLN3-212ENST00000564574 TEX46H3BTG2 121 aa15.45■□□□□ 0.06
CLN3-212ENST00000564574 SOCS3O14543 225 aa15.45■□□□□ 0.06
CLN3-212ENST00000564574 HBE1P02100 147 aa15.45■□□□□ 0.06
CLN3-212ENST00000564574 OR10J4P0C629 311 aa15.45■□□□□ 0.06
CLN3-212ENST00000564574 ID1P41134 155 aa15.45■□□□□ 0.06
CLN3-212ENST00000564574 TFPI2P48307 235 aa15.45■□□□□ 0.06
CLN3-212ENST00000564574 CMC4P56277 68 aaPredicted RBP15.45■□□□□ 0.06
CLN3-212ENST00000564574 WFDC3Q8IUB2 231 aa15.45■□□□□ 0.06
CLN3-212ENST00000564574 SUN5Q8TC36 379 aa15.45■□□□□ 0.06
CLN3-212ENST00000564574 SFT2D1Q8WV19 159 aa15.45■□□□□ 0.06
CLN3-212ENST00000564574 TRAV1-1A0A0B4J248 108 aa15.44■□□□□ 0.06
CLN3-212ENST00000564574 ISLRO14498 428 aa15.44■□□□□ 0.06
CLN3-212ENST00000564574 PSMB3P49720 205 aa15.44■□□□□ 0.06
CLN3-212ENST00000564574 C16orf92Q96LL3 132 aa15.44■□□□□ 0.06
CLN3-212ENST00000564574 CLEC5AQ9NY25 188 aa15.44■□□□□ 0.06
CLN3-212ENST00000564574 FGF8P55075 233 aaPredicted RBP15.43■□□□□ 0.06
CLN3-212ENST00000564574 SNRPD3P62318 126 aaKnown RBP15.43■□□□□ 0.06
CLN3-212ENST00000564574 PSG9Q00887 426 aa15.43■□□□□ 0.06
CLN3-212ENST00000564574 BLNKQ8WV28 456 aa15.43■□□□□ 0.06
CLN3-212ENST00000564574 FAM110AQ9BQ89 295 aa15.43■□□□□ 0.06
CLN3-212ENST00000564574 ZNF331Q9NQX6 463 aaPredicted RBP15.43■□□□□ 0.06
CLN3-212ENST00000564574 KPRPQ5T749 579 aaPredicted RBP15.42■□□□□ 0.06
CLN3-212ENST00000564574 IQCF2Q8IXL9 164 aa15.42■□□□□ 0.06
CLN3-212ENST00000564574 LYPD1Q8N2G4 141 aa15.42■□□□□ 0.06
CLN3-212ENST00000564574 H3BTX0 84 aa15.41■□□□□ 0.06
CLN3-212ENST00000564574 NDUFB4O95168 129 aa15.41■□□□□ 0.06
CLN3-212ENST00000564574 SNRPCP09234 159 aaKnown RBP15.41■□□□□ 0.06
CLN3-212ENST00000564574 PPT1P50897 306 aa15.41■□□□□ 0.06
CLN3-212ENST00000564574 ZNF767PQ75MW2 155 aa15.41■□□□□ 0.06
CLN3-212ENST00000564574 GTSCR1Q86UQ5 136 aa15.41■□□□□ 0.06
CLN3-212ENST00000564574 TRAV8-2A0A0B4J237 113 aa15.4■□□□□ 0.06
CLN3-212ENST00000564574 SLC17A3O00476 420 aa15.4■□□□□ 0.06
CLN3-212ENST00000564574 KRTAP10-11P60412 298 aa15.4■□□□□ 0.06
CLN3-212ENST00000564574 TMPRSS5Q9H3S3 457 aa15.4■□□□□ 0.06
CLN3-212ENST00000564574 AAMDCQ9H7C9 122 aa15.4■□□□□ 0.06
CLN3-212ENST00000564574 ZNF688P0C7X2 276 aa15.39■□□□□ 0.05
CLN3-212ENST00000564574 CD81P60033 236 aa15.39■□□□□ 0.05
CLN3-212ENST00000564574 FAM24BQ8N5W8 94 aa15.39■□□□□ 0.05
CLN3-212ENST00000564574 MAP6D1Q9H9H5 199 aa15.39■□□□□ 0.05
CLN3-212ENST00000564574 PRELID1Q9Y255 219 aa15.39■□□□□ 0.05
CLN3-212ENST00000564574 ARL2-SNX15V9GYD0 113 aa15.39■□□□□ 0.05
CLN3-212ENST00000564574 A0A1W2PRE2 83 aa15.38■□□□□ 0.05
CLN3-212ENST00000564574 CD7P09564 240 aa15.38■□□□□ 0.05
CLN3-212ENST00000564574 IFITM2Q01629 132 aa15.38■□□□□ 0.05
CLN3-212ENST00000564574 PSG3Q16557 428 aa15.38■□□□□ 0.05
CLN3-212ENST00000564574 ODF3L2Q3SX64 289 aa15.38■□□□□ 0.05
CLN3-212ENST00000564574 LYPD6BQ8NI32 183 aa15.38■□□□□ 0.05
CLN3-212ENST00000564574 MRPL53Q96EL3 112 aaKnown RBP15.38■□□□□ 0.05
CLN3-212ENST00000564574 A0A1B0GV50 99 aa15.37■□□□□ 0.05
CLN3-212ENST00000564574 OR11H12B2RN74 326 aa15.37■□□□□ 0.05
CLN3-212ENST00000564574 RANP62826 216 aaKnown RBP15.37■□□□□ 0.05
CLN3-212ENST00000564574 PSMG4Q5JS54 123 aa15.37■□□□□ 0.05
CLN3-212ENST00000564574 LINC00052Q96N35 136 aa15.37■□□□□ 0.05
CLN3-212ENST00000564574 Q9H3A6 140 aa15.37■□□□□ 0.05
CLN3-212ENST00000564574 OTORQ9NRC9 128 aa15.37■□□□□ 0.05
CLN3-212ENST00000564574 PKD1L1Q8TDX9 2849 aa15.37■□□□□ 0.05
CLN3-212ENST00000564574 DEFB131AP59861 70 aa15.36■□□□□ 0.05
CLN3-212ENST00000564574 PMS2P11Q13670 270 aa15.36■□□□□ 0.05
CLN3-212ENST00000564574 PRR25Q96S07 402 aa15.36■□□□□ 0.05
CLN3-212ENST00000564574 NKX6-2Q9C056 277 aaPredicted RBP15.36■□□□□ 0.05
CLN3-212ENST00000564574 MANBALQ9NQG1 85 aa15.36■□□□□ 0.05
CLN3-212ENST00000564574 IFNA1P01562 189 aa15.35■□□□□ 0.05
CLN3-212ENST00000564574 RAB14P61106 215 aa15.35■□□□□ 0.05
CLN3-212ENST00000564574 ICAM4Q14773 271 aa15.35■□□□□ 0.05
CLN3-212ENST00000564574 IGFL4Q6B9Z1 124 aa15.35■□□□□ 0.05
CLN3-212ENST00000564574 EXOC3-AS1Q8N2X6 119 aa15.35■□□□□ 0.05
CLN3-212ENST00000564574 RNF182Q8N6D2 247 aa15.35■□□□□ 0.05
CLN3-212ENST00000564574 C20orf173Q96LM9 149 aa15.35■□□□□ 0.05
CLN3-212ENST00000564574 C19orf73Q9NVV2 129 aa15.35■□□□□ 0.05
CLN3-212ENST00000564574 MGAM2Q2M2H8 2515 aa15.35■□□□□ 0.05
CLN3-212ENST00000564574 FAM74A7A6NL05 159 aa15.34■□□□□ 0.05
CLN3-212ENST00000564574 HLA-DMBP28068 263 aa15.34■□□□□ 0.05
CLN3-212ENST00000564574 CCL20P78556 96 aa15.34■□□□□ 0.05
CLN3-212ENST00000564574 ARL6IP6Q8N6S5 226 aa15.34■□□□□ 0.05
CLN3-212ENST00000564574 RXFP4Q8TDU9 374 aa15.34■□□□□ 0.05
CLN3-212ENST00000564574 PGPA6NDG6 321 aa15.33■□□□□ 0.04
CLN3-212ENST00000564574 NMBP08949 121 aa15.33■□□□□ 0.04
CLN3-212ENST00000564574 UBE2G2P60604 165 aa15.33■□□□□ 0.04
CLN3-212ENST00000564574 Q8N1Y9 231 aa15.33■□□□□ 0.04
CLN3-212ENST00000564574 ZNF738Q8NE65 137 aa15.33■□□□□ 0.04
CLN3-212ENST00000564574 TAGLN2P37802 199 aaKnown RBP15.32■□□□□ 0.04
Retrieved 100 of 20,778 RNA–protein pairs in 28.5 ms