RNA–Protein interactions for RNA: ENST00000561818.1

VPS39-204, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 3

Gene VPS39, Length 537 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-204ENST00000561818 NPIPB6E9PJ23 425 aa5.84□□□□□ -1.47
VPS39-204ENST00000561818 M0QZ24 198 aa5.84□□□□□ -1.47
VPS39-204ENST00000561818 MRPS12O15235 138 aaKnown RBP5.84□□□□□ -1.47
VPS39-204ENST00000561818 AVPP01185 164 aa5.84□□□□□ -1.47
VPS39-204ENST00000561818 PF4V1P10720 104 aa5.84□□□□□ -1.47
VPS39-204ENST00000561818 COL8A1P27658 744 aa5.84□□□□□ -1.47
VPS39-204ENST00000561818 CDX1P47902 265 aaPredicted RBP5.84□□□□□ -1.47
VPS39-204ENST00000561818 CFHR3Q02985 330 aa5.84□□□□□ -1.47
VPS39-204ENST00000561818 DEFB112Q30KQ8 113 aa5.84□□□□□ -1.47
VPS39-204ENST00000561818 DNLZQ5SXM8 178 aa5.84□□□□□ -1.47
VPS39-204ENST00000561818 MORN5Q5VZ52 161 aa5.84□□□□□ -1.47
VPS39-204ENST00000561818 CLEC19AQ6UXS0 136 aa5.84□□□□□ -1.47
VPS39-204ENST00000561818 GPHB5Q86YW7 130 aa5.84□□□□□ -1.47
VPS39-204ENST00000561818 Q8N2B8 174 aa5.84□□□□□ -1.47
VPS39-204ENST00000561818 RNF152Q8N8N0 203 aa5.84□□□□□ -1.47
VPS39-204ENST00000561818 PACRGQ96M98 296 aaPredicted RBP5.84□□□□□ -1.47
VPS39-204ENST00000561818 CCDC140Q96MF4 163 aa5.84□□□□□ -1.47
VPS39-204ENST00000561818 PEF1Q9UBV8 284 aaKnown RBP5.84□□□□□ -1.47
VPS39-204ENST00000561818 TRAPPC1Q9Y5R8 145 aa5.84□□□□□ -1.47
VPS39-204ENST00000561818 ANKRD17O75179 2603 aaKnown RBP5.84□□□□□ -1.47
VPS39-204ENST00000561818 SPG11Q96JI7 2443 aa5.83□□□□□ -1.48
VPS39-204ENST00000561818 RELNP78509 3460 aa5.83□□□□□ -1.48
VPS39-204ENST00000561818 G3V318 75 aa5.83□□□□□ -1.48
VPS39-204ENST00000561818 K7EN84 100 aa5.83□□□□□ -1.48
VPS39-204ENST00000561818 LGALS9O00182 355 aa5.83□□□□□ -1.48
VPS39-204ENST00000561818 CD5LO43866 347 aa5.83□□□□□ -1.48
VPS39-204ENST00000561818 TRGC2P03986 189 aa5.83□□□□□ -1.48
VPS39-204ENST00000561818 CXCL1P09341 107 aa5.83□□□□□ -1.48
VPS39-204ENST00000561818 PSMB8P28062 276 aa5.83□□□□□ -1.48
VPS39-204ENST00000561818 ADMP35318 185 aa5.83□□□□□ -1.48
VPS39-204ENST00000561818 ID1P41134 155 aa5.83□□□□□ -1.48
VPS39-204ENST00000561818 RBPMS2Q6ZRY4 209 aaKnown RBP5.83□□□□□ -1.48
VPS39-204ENST00000561818 GOLT1AQ6ZVE7 132 aa5.83□□□□□ -1.48
VPS39-204ENST00000561818 UBE2E2Q96LR5 201 aa5.83□□□□□ -1.48
VPS39-204ENST00000561818 SERTAD4Q9NUC0 356 aa5.83□□□□□ -1.48
VPS39-204ENST00000561818 U3KQE9 123 aa5.83□□□□□ -1.48
VPS39-204ENST00000561818 IGHV3OR16-10A0A075B7F0 116 aa5.82□□□□□ -1.48
VPS39-204ENST00000561818 C19orf71A6NCJ1 209 aa5.82□□□□□ -1.48
VPS39-204ENST00000561818 OVOL1O14753 267 aa5.82□□□□□ -1.48
VPS39-204ENST00000561818 PLXNB1O43157 2135 aa5.82□□□□□ -1.48
VPS39-204ENST00000561818 HIST1H2BKO60814 126 aa5.82□□□□□ -1.48
VPS39-204ENST00000561818 EIF3GO75821 320 aaKnown RBP eCLIP5.82□□□□□ -1.48
VPS39-204ENST00000561818 IGLV2-8P01709 118 aa5.82□□□□□ -1.48
VPS39-204ENST00000561818 HIST1H2BJP06899 126 aa5.82□□□□□ -1.48
VPS39-204ENST00000561818 RAB4AP20338 218 aa5.82□□□□□ -1.48
VPS39-204ENST00000561818 HOXA5P20719 270 aa5.82□□□□□ -1.48
VPS39-204ENST00000561818 HIST1H2BOP23527 126 aa5.82□□□□□ -1.48
VPS39-204ENST00000561818 HIST1H2BBP33778 126 aa5.82□□□□□ -1.48
VPS39-204ENST00000561818 AKR1D1P51857 326 aa5.82□□□□□ -1.48
VPS39-204ENST00000561818 FOXA3P55318 350 aaPredicted RBP5.82□□□□□ -1.48
VPS39-204ENST00000561818 HIST1H2BDP58876 126 aa5.82□□□□□ -1.48
VPS39-204ENST00000561818 HIST1H2BCP62807 126 aa5.82□□□□□ -1.48
VPS39-204ENST00000561818 HBBP68871 147 aa5.82□□□□□ -1.48
VPS39-204ENST00000561818 LY6EQ16553 131 aa5.82□□□□□ -1.48
VPS39-204ENST00000561818 HIST2H2BEQ16778 126 aa5.82□□□□□ -1.48
VPS39-204ENST00000561818 SMUG1Q53HV7 270 aa5.82□□□□□ -1.48
VPS39-204ENST00000561818 OR10J3Q5JRS4 329 aa5.82□□□□□ -1.48
VPS39-204ENST00000561818 HIST2H2BFQ5QNW6 126 aaPredicted RBP5.82□□□□□ -1.48
VPS39-204ENST00000561818 TMEM78Q5T7P6 136 aa5.82□□□□□ -1.48
VPS39-204ENST00000561818 C16orf54Q6UWD8 224 aa5.82□□□□□ -1.48
VPS39-204ENST00000561818 C19orf35Q6ZS72 473 aa5.82□□□□□ -1.48
VPS39-204ENST00000561818 REC114Q7Z4M0 266 aa5.82□□□□□ -1.48
VPS39-204ENST00000561818 OR4X2Q8NGF9 303 aa5.82□□□□□ -1.48
VPS39-204ENST00000561818 HIST1H2BHQ93079 126 aa5.82□□□□□ -1.48
VPS39-204ENST00000561818 TMEM18Q96B42 140 aa5.82□□□□□ -1.48
VPS39-204ENST00000561818 HIST1H2BNQ99877 126 aa5.82□□□□□ -1.48
VPS39-204ENST00000561818 HIST1H2BMQ99879 126 aa5.82□□□□□ -1.48
VPS39-204ENST00000561818 ASCL2Q99929 193 aa5.82□□□□□ -1.48
VPS39-204ENST00000561818 GSX1Q9H4S2 264 aaPredicted RBP5.82□□□□□ -1.48
VPS39-204ENST00000561818 PSG8Q9UQ74 426 aa5.82□□□□□ -1.48
VPS39-204ENST00000561818 ARHGAP32A7KAX9 2087 aa5.82□□□□□ -1.48
VPS39-204ENST00000561818 PTPN13Q12923 2485 aa5.82□□□□□ -1.48
VPS39-204ENST00000561818 USP9YO00507 2555 aaPredicted RBP5.81□□□□□ -1.48
VPS39-204ENST00000561818 TRAV2A0A0B4J234 112 aa5.81□□□□□ -1.48
VPS39-204ENST00000561818 A8MWP6 167 aa5.81□□□□□ -1.48
VPS39-204ENST00000561818 IGHV4-59P01825 116 aa5.81□□□□□ -1.48
VPS39-204ENST00000561818 LGALS1P09382 135 aaKnown RBP5.81□□□□□ -1.48
VPS39-204ENST00000561818 PAFAH1B2P68402 229 aa5.81□□□□□ -1.48
VPS39-204ENST00000561818 S100A12P80511 92 aa5.81□□□□□ -1.48
VPS39-204ENST00000561818 FABP9Q0Z7S8 132 aa5.81□□□□□ -1.48
VPS39-204ENST00000561818 RIGQ13278 110 aa5.81□□□□□ -1.48
VPS39-204ENST00000561818 LEMD1Q68G75 181 aa5.81□□□□□ -1.48
VPS39-204ENST00000561818 NUDT10Q8NFP7 164 aa5.81□□□□□ -1.48
VPS39-204ENST00000561818 OR10J6PQ8NGY7 276 aa5.81□□□□□ -1.48
VPS39-204ENST00000561818 ZNF418Q8TF45 676 aaPredicted RBP5.81□□□□□ -1.48
VPS39-204ENST00000561818 FRZBQ92765 325 aa5.81□□□□□ -1.48
VPS39-204ENST00000561818 NUDT11Q96G61 164 aa5.81□□□□□ -1.48
VPS39-204ENST00000561818 LINC00477Q96M19 166 aa5.81□□□□□ -1.48
VPS39-204ENST00000561818 MS4A10Q96PG2 267 aa5.81□□□□□ -1.48
VPS39-204ENST00000561818 NRN1Q9NPD7 142 aa5.81□□□□□ -1.48
VPS39-204ENST00000561818 PEMTQ9UBM1 199 aa5.81□□□□□ -1.48
VPS39-204ENST00000561818 RPH3ALQ9UNE2 315 aa5.81□□□□□ -1.48
VPS39-204ENST00000561818 ABCA2Q9BZC7 2435 aa5.8□□□□□ -1.48
VPS39-204ENST00000561818 IGHV7-4-1A0A0J9YVY3 117 aa5.8□□□□□ -1.48
VPS39-204ENST00000561818 HIGD1CA8MV81 97 aa5.8□□□□□ -1.48
VPS39-204ENST00000561818 SNURFLB1AK76 121 aa5.8□□□□□ -1.48
VPS39-204ENST00000561818 F2Z2F3 143 aa5.8□□□□□ -1.48
VPS39-204ENST00000561818 J3QL48 77 aa5.8□□□□□ -1.48
VPS39-204ENST00000561818 CHEK1O14757 476 aa5.8□□□□□ -1.48
VPS39-204ENST00000561818 TRGC1P0CF51 173 aa5.8□□□□□ -1.48
Retrieved 100 of 20,778 RNA–protein pairs in 141 ms