RNA–Protein interactions for RNA: ENST00000561505.2

CLN3-208, Transcript of CLN3, battenin, humanhuman

TSL 1 (best)

Gene CLN3, Length 495 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-208ENST00000561505 RAP2BP61225 183 aa11.38□□□□□ -0.59
CLN3-208ENST00000561505 HIST1H1AQ02539 215 aaPredicted RBP11.38□□□□□ -0.59
CLN3-208ENST00000561505 AKR1C1Q04828 323 aa11.38□□□□□ -0.59
CLN3-208ENST00000561505 PPP1R1AQ13522 171 aa11.38□□□□□ -0.59
CLN3-208ENST00000561505 TTC32Q5I0X7 151 aa11.38□□□□□ -0.59
CLN3-208ENST00000561505 SPANXN5Q5MJ07 72 aa11.38□□□□□ -0.59
CLN3-208ENST00000561505 PATE2Q6UY27 113 aa11.38□□□□□ -0.59
CLN3-208ENST00000561505 SPATA12Q7Z6I5 190 aa11.38□□□□□ -0.59
CLN3-208ENST00000561505 PAIP2BQ9ULR5 123 aaKnown RBP11.38□□□□□ -0.59
CLN3-208ENST00000561505 HERC1Q15751 4861 aa11.37□□□□□ -0.59
CLN3-208ENST00000561505 IL5P05113 134 aa11.37□□□□□ -0.59
CLN3-208ENST00000561505 KRTAP10-2P60368 255 aa11.37□□□□□ -0.59
CLN3-208ENST00000561505 TMED4Q7Z7H5 227 aa11.37□□□□□ -0.59
CLN3-208ENST00000561505 OR10J6PQ8NGY7 276 aa11.37□□□□□ -0.59
CLN3-208ENST00000561505 NOP10Q9NPE3 64 aaKnown RBP11.37□□□□□ -0.59
CLN3-208ENST00000561505 ZNF331Q9NQX6 463 aaPredicted RBP11.37□□□□□ -0.59
CLN3-208ENST00000561505 LINC00869P0C866 280 aa11.36□□□□□ -0.59
CLN3-208ENST00000561505 VAMP1P23763 118 aa11.36□□□□□ -0.59
CLN3-208ENST00000561505 AP3S2P59780 193 aa11.36□□□□□ -0.59
CLN3-208ENST00000561505 RHOBP62745 196 aa11.36□□□□□ -0.59
CLN3-208ENST00000561505 DLK1P80370 383 aa11.36□□□□□ -0.59
CLN3-208ENST00000561505 FGL1Q08830 312 aa11.36□□□□□ -0.59
CLN3-208ENST00000561505 RPUSD4Q96CM3 377 aaKnown RBP11.36□□□□□ -0.59
CLN3-208ENST00000561505 UHRF2Q96PU4 802 aa11.36□□□□□ -0.59
CLN3-208ENST00000561505 SCRT2Q9NQ03 307 aa11.36□□□□□ -0.59
CLN3-208ENST00000561505 RNF24Q9Y225 148 aa11.36□□□□□ -0.59
CLN3-208ENST00000561505 H3BP45 60 aa11.35□□□□□ -0.59
CLN3-208ENST00000561505 ZNF701M0R085 212 aaPredicted RBP11.35□□□□□ -0.59
CLN3-208ENST00000561505 HOXB5P09067 269 aa11.35□□□□□ -0.59
CLN3-208ENST00000561505 M6PRP20645 277 aa11.35□□□□□ -0.59
CLN3-208ENST00000561505 HOXA5P20719 270 aa11.35□□□□□ -0.59
CLN3-208ENST00000561505 UBE2MP61081 183 aaKnown RBP11.35□□□□□ -0.59
CLN3-208ENST00000561505 CLINT1Q14677 625 aa11.35□□□□□ -0.59
CLN3-208ENST00000561505 ESRGQ1W209 222 aa11.35□□□□□ -0.59
CLN3-208ENST00000561505 PXDC1Q5TGL8 231 aa11.35□□□□□ -0.59
CLN3-208ENST00000561505 TMEM14EPQ6UXP3 125 aa11.35□□□□□ -0.59
CLN3-208ENST00000561505 S100A7AQ86SG5 101 aa11.35□□□□□ -0.59
CLN3-208ENST00000561505 ZBTB8BQ8NAP8 495 aaPredicted RBP11.35□□□□□ -0.59
CLN3-208ENST00000561505 GNPNAT1Q96EK6 184 aaPredicted RBP11.35□□□□□ -0.59
CLN3-208ENST00000561505 SMIM8Q96KF7 97 aa11.35□□□□□ -0.59
CLN3-208ENST00000561505 NPVFQ9HCQ7 196 aa11.35□□□□□ -0.59
CLN3-208ENST00000561505 MRPS16Q9Y3D3 137 aaKnown RBP11.35□□□□□ -0.59
CLN3-208ENST00000561505 TRAV26-1A0A087WT03 109 aa11.34□□□□□ -0.59
CLN3-208ENST00000561505 POLR2GP62487 172 aaKnown RBP eCLIP11.34□□□□□ -0.59
CLN3-208ENST00000561505 KIR3DS1Q14943 382 aa11.34□□□□□ -0.59
CLN3-208ENST00000561505 Q6ZRN7 208 aaPredicted RBP11.34□□□□□ -0.59
CLN3-208ENST00000561505 TOMM5Q8N4H5 51 aa11.34□□□□□ -0.59
CLN3-208ENST00000561505 C18orf15Q96N68 181 aa11.34□□□□□ -0.59
CLN3-208ENST00000561505 V9GYH0 126 aa11.34□□□□□ -0.59
CLN3-208ENST00000561505 ADAP1O75689 374 aa11.33□□□□□ -0.6
CLN3-208ENST00000561505 OR5G3P0C626 314 aa11.33□□□□□ -0.6
CLN3-208ENST00000561505 DAZ2Q13117 558 aaKnown RBP11.33□□□□□ -0.6
CLN3-208ENST00000561505 LCN15Q6UWW0 184 aa11.33□□□□□ -0.6
CLN3-208ENST00000561505 SLC50A1Q9BRV3 221 aa11.33□□□□□ -0.6
CLN3-208ENST00000561505 ARV1Q9H2C2 271 aa11.33□□□□□ -0.6
CLN3-208ENST00000561505 PSENENQ9NZ42 101 aa11.33□□□□□ -0.6
CLN3-208ENST00000561505 GFI1BQ5VTD9 330 aa11.32□□□□□ -0.6
CLN3-208ENST00000561505 CCDC190Q86UF4 302 aa11.32□□□□□ -0.6
CLN3-208ENST00000561505 SAT2Q96F10 170 aaPredicted RBP11.32□□□□□ -0.6
CLN3-208ENST00000561505 ODF3Q96PU9 254 aa11.32□□□□□ -0.6
CLN3-208ENST00000561505 ARL6Q9H0F7 186 aa11.32□□□□□ -0.6
CLN3-208ENST00000561505 PPP1R14DQ9NXH3 145 aa11.32□□□□□ -0.6
CLN3-208ENST00000561505 C9orf170A2RU37 121 aa11.31□□□□□ -0.6
CLN3-208ENST00000561505 H3BMQ9 156 aa11.31□□□□□ -0.6
CLN3-208ENST00000561505 CCNKO75909 580 aa11.31□□□□□ -0.6
CLN3-208ENST00000561505 HTN1P15515 57 aa11.31□□□□□ -0.6
CLN3-208ENST00000561505 TAS2R30P59541 319 aa11.31□□□□□ -0.6
CLN3-208ENST00000561505 OR5I1Q13606 314 aa11.31□□□□□ -0.6
CLN3-208ENST00000561505 TEPPQ6URK8 271 aa11.31□□□□□ -0.6
CLN3-208ENST00000561505 MCFD2Q8NI22 146 aa11.31□□□□□ -0.6
CLN3-208ENST00000561505 SMCO3A2RU48 225 aa11.3□□□□□ -0.6
CLN3-208ENST00000561505 PRAC2D3DTV9 90 aa11.3□□□□□ -0.6
CLN3-208ENST00000561505 IGLC2P0DOY2 106 aa11.3□□□□□ -0.6
CLN3-208ENST00000561505 LRRC20Q8TCA0 184 aa11.3□□□□□ -0.6
CLN3-208ENST00000561505 VSIG2Q96IQ7 327 aa11.3□□□□□ -0.6
CLN3-208ENST00000561505 GGACTQ9BVM4 153 aa11.3□□□□□ -0.6
CLN3-208ENST00000561505 LINC00305Q7Z4B0 112 aa11.29□□□□□ -0.6
CLN3-208ENST00000561505 BPIFA4PQ86YQ2 179 aa11.29□□□□□ -0.6
CLN3-208ENST00000561505 CCDC28AQ8IWP9 274 aa11.29□□□□□ -0.6
CLN3-208ENST00000561505 TMEM37Q8WXS4 190 aa11.29□□□□□ -0.6
CLN3-208ENST00000561505 LINC00467Q9BRT7 94 aa11.29□□□□□ -0.6
CLN3-208ENST00000561505 A0A096LPF7 62 aa11.28□□□□□ -0.6
CLN3-208ENST00000561505 GAGE12BA1L429 117 aa11.28□□□□□ -0.6
CLN3-208ENST00000561505 NPIPB6E9PJ23 425 aa11.28□□□□□ -0.6
CLN3-208ENST00000561505 SLC17A3O00476 420 aa11.28□□□□□ -0.6
CLN3-208ENST00000561505 TSC22D2O75157 780 aa11.28□□□□□ -0.6
CLN3-208ENST00000561505 GAGE7O76087 117 aa11.28□□□□□ -0.6
CLN3-208ENST00000561505 RLN2P04090 185 aa11.28□□□□□ -0.6
CLN3-208ENST00000561505 METTL15P1P0C7V9 234 aa11.28□□□□□ -0.6
CLN3-208ENST00000561505 GAGE12FP0CL80 117 aa11.28□□□□□ -0.6
CLN3-208ENST00000561505 GAGE12GP0CL81 117 aa11.28□□□□□ -0.6
CLN3-208ENST00000561505 GAGE12IP0CL82 117 aa11.28□□□□□ -0.6
CLN3-208ENST00000561505 CT45A10P0DMU9 189 aa11.28□□□□□ -0.6
CLN3-208ENST00000561505 ANXA7P20073 488 aaKnown RBP11.28□□□□□ -0.6
CLN3-208ENST00000561505 ARL16Q0P5N6 197 aa11.28□□□□□ -0.6
CLN3-208ENST00000561505 PYDC2Q56P42 97 aa11.28□□□□□ -0.6
CLN3-208ENST00000561505 ZNF546Q86UE3 836 aa11.28□□□□□ -0.6
CLN3-208ENST00000561505 OR10P1Q8NGE3 313 aa11.28□□□□□ -0.6
CLN3-208ENST00000561505 ZNF431Q8TF32 576 aaPredicted RBP11.28□□□□□ -0.6
CLN3-208ENST00000561505 PYGO2Q9BRQ0 406 aa11.28□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 58.2 ms