RNA–Protein interactions for RNA: ENST00000560467.1

LDLR-212, Transcript of low density lipoprotein receptor, humanhuman

TSL 3

Gene LDLR, Length 928 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-212ENST00000560467 SCRT1Q9BWW7 348 aa8.95□□□□□ -0.98
LDLR-212ENST00000560467 SMDT1Q9H4I9 107 aa8.95□□□□□ -0.98
LDLR-212ENST00000560467 MED9Q9NWA0 146 aa8.95□□□□□ -0.98
LDLR-212ENST00000560467 TRAV5A0A0B4J249 113 aa8.94□□□□□ -0.98
LDLR-212ENST00000560467 RAB19A4D1S5 217 aa8.94□□□□□ -0.98
LDLR-212ENST00000560467 LINC00862A6NCI5 91 aa8.94□□□□□ -0.98
LDLR-212ENST00000560467 RBFOX3A6NFN3 312 aa8.94□□□□□ -0.98
LDLR-212ENST00000560467 BUB3O43684 328 aa8.94□□□□□ -0.98
LDLR-212ENST00000560467 NBEAP1P0C6P0 100 aa8.94□□□□□ -0.98
LDLR-212ENST00000560467 HIST1H1EP10412 219 aaKnown RBP8.94□□□□□ -0.98
LDLR-212ENST00000560467 PAFAH1B2P68402 229 aa8.94□□□□□ -0.98
LDLR-212ENST00000560467 PMS2P11Q13670 270 aa8.94□□□□□ -0.98
LDLR-212ENST00000560467 SPATA31B1PQ5VZV4 182 aa8.94□□□□□ -0.98
LDLR-212ENST00000560467 CST9LP1Q5W188 147 aa8.94□□□□□ -0.98
LDLR-212ENST00000560467 LEMD1Q68G75 181 aa8.94□□□□□ -0.98
LDLR-212ENST00000560467 UNQ9165/PRO28630Q6UXU0 137 aa8.94□□□□□ -0.98
LDLR-212ENST00000560467 COMMD7Q86VX2 200 aa8.94□□□□□ -0.98
LDLR-212ENST00000560467 DYNLRB2Q8TF09 96 aa8.94□□□□□ -0.98
LDLR-212ENST00000560467 RHPN1-AS1Q9BWJ2 59 aa8.94□□□□□ -0.98
LDLR-212ENST00000560467 SLC25A2Q9BXI2 301 aa8.94□□□□□ -0.98
LDLR-212ENST00000560467 AAMDCQ9H7C9 122 aa8.94□□□□□ -0.98
LDLR-212ENST00000560467 TREM1Q9NP99 234 aa8.94□□□□□ -0.98
LDLR-212ENST00000560467 SMPXQ9UHP9 88 aa8.94□□□□□ -0.98
LDLR-212ENST00000560467 VAX2Q9UIW0 290 aa8.94□□□□□ -0.98
LDLR-212ENST00000560467 ZNF256Q9Y2P7 627 aaPredicted RBP8.94□□□□□ -0.98
LDLR-212ENST00000560467 A8MWP6 167 aa8.93□□□□□ -0.98
LDLR-212ENST00000560467 F6UZH7 168 aa8.93□□□□□ -0.98
LDLR-212ENST00000560467 OR10J4P0C629 311 aa8.93□□□□□ -0.98
LDLR-212ENST00000560467 SLURP1P55000 103 aa8.93□□□□□ -0.98
LDLR-212ENST00000560467 PSG9Q00887 426 aa8.93□□□□□ -0.98
LDLR-212ENST00000560467 HAGHQ16775 308 aa8.93□□□□□ -0.98
LDLR-212ENST00000560467 TM4SF20Q53R12 229 aa8.93□□□□□ -0.98
LDLR-212ENST00000560467 UQCC3Q6UW78 93 aa8.93□□□□□ -0.98
LDLR-212ENST00000560467 OR9G4Q8NGQ1 327 aa8.93□□□□□ -0.98
LDLR-212ENST00000560467 BLNKQ8WV28 456 aa8.93□□□□□ -0.98
LDLR-212ENST00000560467 RCHY1Q96PM5 261 aa8.93□□□□□ -0.98
LDLR-212ENST00000560467 CLEC5AQ9NY25 188 aa8.93□□□□□ -0.98
LDLR-212ENST00000560467 ARL2-SNX15V9GYD0 113 aa8.93□□□□□ -0.98
LDLR-212ENST00000560467 DNAH1Q9P2D7 4330 aa8.93□□□□□ -0.98
LDLR-212ENST00000560467 IGHV3-49A0A0A0MS15 119 aa8.92□□□□□ -0.98
LDLR-212ENST00000560467 IGHV3-66A0A0C4DH42 116 aa8.92□□□□□ -0.98
LDLR-212ENST00000560467 A0A1W2PRE2 83 aa8.92□□□□□ -0.98
LDLR-212ENST00000560467 OVOL1O14753 267 aa8.92□□□□□ -0.98
LDLR-212ENST00000560467 BCL2P10415 239 aa8.92□□□□□ -0.98
LDLR-212ENST00000560467 CBLN1P23435 193 aa8.92□□□□□ -0.98
LDLR-212ENST00000560467 CSN1S1P47710 185 aa8.92□□□□□ -0.98
LDLR-212ENST00000560467 FHL3Q13643 280 aa8.92□□□□□ -0.98
LDLR-212ENST00000560467 SIGLEC15Q6ZMC9 328 aa8.92□□□□□ -0.98
LDLR-212ENST00000560467 RBPMS2Q6ZRY4 209 aaKnown RBP8.92□□□□□ -0.98
LDLR-212ENST00000560467 SBSPONQ8IVN8 264 aa8.92□□□□□ -0.98
LDLR-212ENST00000560467 CMTM2Q8TAZ6 248 aa8.92□□□□□ -0.98
LDLR-212ENST00000560467 U3KQE9 123 aa8.92□□□□□ -0.98
LDLR-212ENST00000560467 IGHV3OR16-13A0A075B7E8 117 aa8.91□□□□□ -0.98
LDLR-212ENST00000560467 IGHV3-74A0A0B4J1X5 117 aa8.91□□□□□ -0.98
LDLR-212ENST00000560467 LCE6AA0A183 80 aa8.91□□□□□ -0.98
LDLR-212ENST00000560467 C2orf70A6NJV1 201 aa8.91□□□□□ -0.98
LDLR-212ENST00000560467 DNASE2O00115 360 aaPredicted RBP8.91□□□□□ -0.98
LDLR-212ENST00000560467 PDE6DO43924 150 aa8.91□□□□□ -0.98
LDLR-212ENST00000560467 PAGE4O60829 102 aa8.91□□□□□ -0.98
LDLR-212ENST00000560467 PYYP10082 97 aa8.91□□□□□ -0.98
LDLR-212ENST00000560467 FOLR2P14207 255 aa8.91□□□□□ -0.98
LDLR-212ENST00000560467 UBE2G2P60604 165 aa8.91□□□□□ -0.98
LDLR-212ENST00000560467 RANP62826 216 aaKnown RBP8.91□□□□□ -0.98
LDLR-212ENST00000560467 CCL20P78556 96 aa8.91□□□□□ -0.98
LDLR-212ENST00000560467 MEF2BQ02080 365 aaPredicted RBP8.91□□□□□ -0.98
LDLR-212ENST00000560467 PDE6HQ13956 83 aa8.91□□□□□ -0.98
LDLR-212ENST00000560467 TOR2AQ5JU69 321 aa8.91□□□□□ -0.98
LDLR-212ENST00000560467 MORN5Q5VZ52 161 aa8.91□□□□□ -0.98
LDLR-212ENST00000560467 C16orf54Q6UWD8 224 aa8.91□□□□□ -0.98
LDLR-212ENST00000560467 SSX7Q7RTT5 188 aa8.91□□□□□ -0.98
LDLR-212ENST00000560467 LYPD1Q8N2G4 141 aa8.91□□□□□ -0.98
LDLR-212ENST00000560467 DLX4Q92988 240 aaPredicted RBP8.91□□□□□ -0.98
LDLR-212ENST00000560467 FAM167A-AS1Q96KT0 104 aa8.91□□□□□ -0.98
LDLR-212ENST00000560467 CITED4Q96RK1 184 aa8.91□□□□□ -0.98
LDLR-212ENST00000560467 TCEAL7Q9BRU2 100 aa8.91□□□□□ -0.98
LDLR-212ENST00000560467 TMPRSS5Q9H3S3 457 aa8.91□□□□□ -0.98
LDLR-212ENST00000560467 SMAD5-AS1Q9Y6J3 95 aa8.91□□□□□ -0.98
LDLR-212ENST00000560467 STARD9Q9P2P6 4700 aa8.9□□□□□ -0.98
LDLR-212ENST00000560467 C11orf94C9JXX5 98 aa8.9□□□□□ -0.98
LDLR-212ENST00000560467 K7EQM0 130 aa8.9□□□□□ -0.98
LDLR-212ENST00000560467 CHEK1O14757 476 aa8.9□□□□□ -0.98
LDLR-212ENST00000560467 EIF3GO75821 320 aaKnown RBP eCLIP8.9□□□□□ -0.98
LDLR-212ENST00000560467 GP9P14770 177 aa8.9□□□□□ -0.98
LDLR-212ENST00000560467 ID1P41134 155 aa8.9□□□□□ -0.98
LDLR-212ENST00000560467 ZFAND6Q6FIF0 208 aa8.9□□□□□ -0.98
LDLR-212ENST00000560467 RXFP4Q8TDU9 374 aa8.9□□□□□ -0.98
LDLR-212ENST00000560467 FXYD5Q96DB9 178 aa8.9□□□□□ -0.98
LDLR-212ENST00000560467 SLC50A1Q9BRV3 221 aa8.9□□□□□ -0.98
LDLR-212ENST00000560467 TRBV19A0A075B6N1 114 aa8.89□□□□□ -0.99
LDLR-212ENST00000560467 TMEM213A2RRL7 107 aa8.89□□□□□ -0.99
LDLR-212ENST00000560467 ZNF253O75346 499 aa8.89□□□□□ -0.99
LDLR-212ENST00000560467 APOHP02749 345 aaPredicted RBP8.89□□□□□ -0.99
LDLR-212ENST00000560467 ZNF506Q5JVG8 444 aa8.89□□□□□ -0.99
LDLR-212ENST00000560467 TCF24Q7RTU0 167 aa8.89□□□□□ -0.99
LDLR-212ENST00000560467 RPUSD4Q96CM3 377 aaKnown RBP8.89□□□□□ -0.99
LDLR-212ENST00000560467 C16orf92Q96LL3 132 aa8.89□□□□□ -0.99
LDLR-212ENST00000560467 NRN1Q9NPD7 142 aa8.89□□□□□ -0.99
LDLR-212ENST00000560467 OTORQ9NRC9 128 aa8.89□□□□□ -0.99
LDLR-212ENST00000560467 PRELID1Q9Y255 219 aa8.89□□□□□ -0.99
LDLR-212ENST00000560467 A0A087X0K7 114 aa8.88□□□□□ -0.99
Retrieved 100 of 20,778 RNA–protein pairs in 71.4 ms