RNA–Protein interactions for RNA: ENST00000559339.1

SNX1-205, Transcript of sorting nexin 1, humanhuman

TSL 1 (best)

Gene SNX1, Length 101 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX1-205ENST00000559339 EWSR1Q01844 656 aaKnown RBP eCLIP3.19□□□□□ -1.9
SNX1-205ENST00000559339 NHLH2Q02577 135 aa3.19□□□□□ -1.9
SNX1-205ENST00000559339 PMS2P11Q13670 270 aa3.19□□□□□ -1.9
SNX1-205ENST00000559339 CLINT1Q14677 625 aa3.19□□□□□ -1.9
SNX1-205ENST00000559339 RGS21Q2M5E4 152 aa3.19□□□□□ -1.9
SNX1-205ENST00000559339 GDF5OSQ5U4N7 250 aa3.19□□□□□ -1.9
SNX1-205ENST00000559339 FAM78BQ5VT40 261 aa3.19□□□□□ -1.9
SNX1-205ENST00000559339 MIC13Q5XKP0 118 aa3.19□□□□□ -1.9
SNX1-205ENST00000559339 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa3.19□□□□□ -1.9
SNX1-205ENST00000559339 SCGB1C1Q8TD33 95 aa3.19□□□□□ -1.9
SNX1-205ENST00000559339 ASB13Q8WXK3 278 aa3.19□□□□□ -1.9
SNX1-205ENST00000559339 TMEM37Q8WXS4 190 aa3.19□□□□□ -1.9
SNX1-205ENST00000559339 ATP5SQ99766 215 aa3.19□□□□□ -1.9
SNX1-205ENST00000559339 SLC50A1Q9BRV3 221 aa3.19□□□□□ -1.9
SNX1-205ENST00000559339 TMEM208Q9BTX3 173 aa3.19□□□□□ -1.9
SNX1-205ENST00000559339 NPCDR1Q9BY65 106 aa3.19□□□□□ -1.9
SNX1-205ENST00000559339 MED28Q9H204 178 aa3.19□□□□□ -1.9
SNX1-205ENST00000559339 HRH4Q9H3N8 390 aa3.19□□□□□ -1.9
SNX1-205ENST00000559339 C11orf1Q9H5F2 150 aa3.19□□□□□ -1.9
SNX1-205ENST00000559339 SLC39A9Q9NUM3 307 aa3.19□□□□□ -1.9
SNX1-205ENST00000559339 OR5AC2Q9NZP5 309 aa3.19□□□□□ -1.9
SNX1-205ENST00000559339 GOLT1BQ9Y3E0 138 aa3.19□□□□□ -1.9
SNX1-205ENST00000559339 PXMP4Q9Y6I8 212 aa3.19□□□□□ -1.9
SNX1-205ENST00000559339 A0A087X0K7 114 aa3.18□□□□□ -1.9
SNX1-205ENST00000559339 IGHV4-28A0A0C4DH34 117 aa3.18□□□□□ -1.9
SNX1-205ENST00000559339 TEX48A0A1B0GUV7 120 aa3.18□□□□□ -1.9
SNX1-205ENST00000559339 F6UB75 175 aa3.18□□□□□ -1.9
SNX1-205ENST00000559339 FAM229AH3BQW9 127 aa3.18□□□□□ -1.9
SNX1-205ENST00000559339 DEFB4AO15263 64 aa3.18□□□□□ -1.9
SNX1-205ENST00000559339 HBE1P02100 147 aa3.18□□□□□ -1.9
SNX1-205ENST00000559339 GIG44P09565 113 aaPredicted RBP3.18□□□□□ -1.9
SNX1-205ENST00000559339 SPART-AS1P0CW21 52 aa3.18□□□□□ -1.9
SNX1-205ENST00000559339 RPL12P30050 165 aaKnown RBP3.18□□□□□ -1.9
SNX1-205ENST00000559339 TSPOP30536 169 aa3.18□□□□□ -1.9
SNX1-205ENST00000559339 CNN1P51911 297 aaKnown RBP3.18□□□□□ -1.9
SNX1-205ENST00000559339 HIST1H1AQ02539 215 aaPredicted RBP3.18□□□□□ -1.9
SNX1-205ENST00000559339 PDE6HQ13956 83 aa3.18□□□□□ -1.9
SNX1-205ENST00000559339 ZNF266Q14584 549 aa3.18□□□□□ -1.9
SNX1-205ENST00000559339 OPCMLQ14982 345 aa3.18□□□□□ -1.9
SNX1-205ENST00000559339 PSG3Q16557 428 aa3.18□□□□□ -1.9
SNX1-205ENST00000559339 CEMP1Q6PRD7 247 aaPredicted RBP3.18□□□□□ -1.9
SNX1-205ENST00000559339 PATE2Q6UY27 113 aa3.18□□□□□ -1.9
SNX1-205ENST00000559339 ZNF705AQ6ZN79 300 aaPredicted RBP3.18□□□□□ -1.9
SNX1-205ENST00000559339 RNF182Q8N6D2 247 aa3.18□□□□□ -1.9
SNX1-205ENST00000559339 INO80EQ8NBZ0 244 aaPredicted RBP3.18□□□□□ -1.9
SNX1-205ENST00000559339 CSNK1G2-AS1Q8NCQ2 148 aa3.18□□□□□ -1.9
SNX1-205ENST00000559339 OR10J6PQ8NGY7 276 aa3.18□□□□□ -1.9
SNX1-205ENST00000559339 PHLDA1Q8WV24 401 aaPredicted RBP3.18□□□□□ -1.9
SNX1-205ENST00000559339 RPUSD4Q96CM3 377 aaKnown RBP3.18□□□□□ -1.9
SNX1-205ENST00000559339 NEU1Q99519 415 aa3.18□□□□□ -1.9
SNX1-205ENST00000559339 WDR61Q9GZS3 305 aaKnown RBP3.18□□□□□ -1.9
SNX1-205ENST00000559339 AAMDCQ9H7C9 122 aa3.18□□□□□ -1.9
SNX1-205ENST00000559339 ZNF331Q9NQX6 463 aaPredicted RBP3.18□□□□□ -1.9
SNX1-205ENST00000559339 MBD2Q9UBB5 411 aa3.18□□□□□ -1.9
SNX1-205ENST00000559339 TIMM9Q9Y5J7 89 aa3.18□□□□□ -1.9
SNX1-205ENST00000559339 TRAV8-2A0A0B4J237 113 aa3.17□□□□□ -1.9
SNX1-205ENST00000559339 LCE6AA0A183 80 aa3.17□□□□□ -1.9
SNX1-205ENST00000559339 ZNF705FA8MVS1 300 aaPredicted RBP3.17□□□□□ -1.9
SNX1-205ENST00000559339 H0YIZ8 118 aa3.17□□□□□ -1.9
SNX1-205ENST00000559339 BOLA2-SMG1P6H3BVE0 249 aa3.17□□□□□ -1.9
SNX1-205ENST00000559339 ZNF253O75346 499 aa3.17□□□□□ -1.9
SNX1-205ENST00000559339 INSP01308 110 aa3.17□□□□□ -1.9
SNX1-205ENST00000559339 ZNF705DP0CH99 300 aaPredicted RBP3.17□□□□□ -1.9
SNX1-205ENST00000559339 ZNF705BP0CI00 300 aaPredicted RBP3.17□□□□□ -1.9
SNX1-205ENST00000559339 IGLC2P0DOY2 106 aa3.17□□□□□ -1.9
SNX1-205ENST00000559339 HIST1H1EP10412 219 aaKnown RBP3.17□□□□□ -1.9
SNX1-205ENST00000559339 HTN1P15515 57 aa3.17□□□□□ -1.9
SNX1-205ENST00000559339 CDKN1BP46527 198 aa3.17□□□□□ -1.9
SNX1-205ENST00000559339 EMP1P54849 157 aa3.17□□□□□ -1.9
SNX1-205ENST00000559339 TCTAP57738 103 aa3.17□□□□□ -1.9
SNX1-205ENST00000559339 FXYD7P58549 80 aa3.17□□□□□ -1.9
SNX1-205ENST00000559339 TAS2R45P59539 299 aa3.17□□□□□ -1.9
SNX1-205ENST00000559339 DEFB1P60022 68 aa3.17□□□□□ -1.9
SNX1-205ENST00000559339 NANOS2P60321 138 aaKnown RBP3.17□□□□□ -1.9
SNX1-205ENST00000559339 SPINK13Q1W4C9 94 aa3.17□□□□□ -1.9
SNX1-205ENST00000559339 RRN3P1Q2M238 152 aa3.17□□□□□ -1.9
SNX1-205ENST00000559339 IGFL4Q6B9Z1 124 aa3.17□□□□□ -1.9
SNX1-205ENST00000559339 TMEM256Q8N2U0 113 aa3.17□□□□□ -1.9
SNX1-205ENST00000559339 Q8NAQ8 132 aa3.17□□□□□ -1.9
SNX1-205ENST00000559339 OR11H7Q8NGC8 314 aa3.17□□□□□ -1.9
SNX1-205ENST00000559339 OR8A1Q8NGG7 326 aa3.17□□□□□ -1.9
SNX1-205ENST00000559339 C2CD4CQ8TF44 421 aa3.17□□□□□ -1.9
SNX1-205ENST00000559339 C20orf173Q96LM9 149 aa3.17□□□□□ -1.9
SNX1-205ENST00000559339 IGF2BP2-AS1Q96M15 143 aa3.17□□□□□ -1.9
SNX1-205ENST00000559339 RNF126Q9BV68 326 aa3.17□□□□□ -1.9
SNX1-205ENST00000559339 MRPL32Q9BYC8 188 aaKnown RBP3.17□□□□□ -1.9
SNX1-205ENST00000559339 SMIM3Q9BZL3 60 aa3.17□□□□□ -1.9
SNX1-205ENST00000559339 SLC35B3Q9H1N7 401 aa3.17□□□□□ -1.9
SNX1-205ENST00000559339 TMEM14CQ9P0S9 112 aa3.17□□□□□ -1.9
SNX1-205ENST00000559339 PRELID1Q9Y255 219 aa3.17□□□□□ -1.9
SNX1-205ENST00000559339 HSPB11Q9Y547 144 aa3.17□□□□□ -1.9
SNX1-205ENST00000559339 RFNGQ9Y644 331 aa3.17□□□□□ -1.9
SNX1-205ENST00000559339 ALG5Q9Y673 324 aa3.17□□□□□ -1.9
SNX1-205ENST00000559339 X6R8D5 127 aa3.17□□□□□ -1.9
SNX1-205ENST00000559339 TRBV19A0A075B6N1 114 aa3.16□□□□□ -1.9
SNX1-205ENST00000559339 TRAV10A0A0B4J240 114 aa3.16□□□□□ -1.9
SNX1-205ENST00000559339 TRAV5A0A0B4J249 113 aa3.16□□□□□ -1.9
SNX1-205ENST00000559339 LOC102723971A0A1B0GUV8 181 aa3.16□□□□□ -1.9
SNX1-205ENST00000559339 A0A1W2PPV4 95 aa3.16□□□□□ -1.9
SNX1-205ENST00000559339 H3BQ15 152 aa3.16□□□□□ -1.9
Retrieved 100 of 20,778 RNA–protein pairs in 132.3 ms