RNA–Protein interactions for RNA: ENST00000557958.1

LDLR-206, Transcript of low density lipoprotein receptor, humanhuman

TSL 2

Gene LDLR, Length 1,881 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-206ENST00000557958 CLEC19AQ6UXS0 136 aa13.09□□□□□ -0.31
LDLR-206ENST00000557958 TMEM183AQ8IXX5 376 aa13.09□□□□□ -0.31
LDLR-206ENST00000557958 USMG5Q96IX5 58 aa13.09□□□□□ -0.31
LDLR-206ENST00000557958 CCDC140Q96MF4 163 aa13.09□□□□□ -0.31
LDLR-206ENST00000557958 IL36BQ9NZH7 164 aa13.09□□□□□ -0.31
LDLR-206ENST00000557958 ZNF580Q9UK33 172 aa13.09□□□□□ -0.31
LDLR-206ENST00000557958 ZFHX3Q15911 3703 aa13.09□□□□□ -0.31
LDLR-206ENST00000557958 K7EQM0 130 aa13.08□□□□□ -0.32
LDLR-206ENST00000557958 FSHBP01225 129 aa13.08□□□□□ -0.32
LDLR-206ENST00000557958 IGHV4-59P01825 116 aa13.08□□□□□ -0.32
LDLR-206ENST00000557958 TYMSP04818 313 aa13.08□□□□□ -0.32
LDLR-206ENST00000557958 GNG5P63218 68 aa13.08□□□□□ -0.32
LDLR-206ENST00000557958 KRTAP1-1Q07627 177 aa13.08□□□□□ -0.32
LDLR-206ENST00000557958 C9orf139Q6ZV77 190 aa13.08□□□□□ -0.32
LDLR-206ENST00000557958 AAMDCQ9H7C9 122 aa13.08□□□□□ -0.32
LDLR-206ENST00000557958 RPH3ALQ9UNE2 315 aa13.08□□□□□ -0.32
LDLR-206ENST00000557958 H3BTX0 84 aa13.08□□□□□ -0.32
LDLR-206ENST00000557958 RPEL1Q2QD12 228 aa13.08□□□□□ -0.32
LDLR-206ENST00000557958 IBA57Q5T440 356 aaKnown RBP13.08□□□□□ -0.32
LDLR-206ENST00000557958 TEX29Q8N6K0 151 aa13.08□□□□□ -0.32
LDLR-206ENST00000557958 GPR82Q96P67 336 aa13.08□□□□□ -0.32
LDLR-206ENST00000557958 HIST1H2BLQ99880 126 aa13.08□□□□□ -0.32
LDLR-206ENST00000557958 AKAP9Q99996 3911 aa13.07□□□□□ -0.32
LDLR-206ENST00000557958 IGLV2-8P01709 118 aa13.07□□□□□ -0.32
LDLR-206ENST00000557958 FABP4P15090 132 aa13.07□□□□□ -0.32
LDLR-206ENST00000557958 TPPP2P59282 170 aa13.07□□□□□ -0.32
LDLR-206ENST00000557958 PSG9Q00887 426 aa13.07□□□□□ -0.32
LDLR-206ENST00000557958 OR5I1Q13606 314 aa13.07□□□□□ -0.32
LDLR-206ENST00000557958 CDPF1Q6NVV7 123 aa13.07□□□□□ -0.32
LDLR-206ENST00000557958 OR8I2Q8N0Y5 310 aa13.07□□□□□ -0.32
LDLR-206ENST00000557958 LINC00479Q96M42 142 aa13.07□□□□□ -0.32
LDLR-206ENST00000557958 PACRGQ96M98 296 aaPredicted RBP13.07□□□□□ -0.32
LDLR-206ENST00000557958 TRAV34A0A0B4J273 112 aa13.06□□□□□ -0.32
LDLR-206ENST00000557958 MRPS12O15235 138 aaKnown RBP13.06□□□□□ -0.32
LDLR-206ENST00000557958 IER3P46695 156 aa13.06□□□□□ -0.32
LDLR-206ENST00000557958 CSPG4Q6UVK1 2322 aa13.06□□□□□ -0.32
LDLR-206ENST00000557958 TOMM20LQ6UXN7 152 aa13.06□□□□□ -0.32
LDLR-206ENST00000557958 ZNF414Q96IQ9 312 aa13.06□□□□□ -0.32
LDLR-206ENST00000557958 TEX15Q9BXT5 2789 aa13.06□□□□□ -0.32
LDLR-206ENST00000557958 LINC00527Q9UJ94 153 aa13.06□□□□□ -0.32
LDLR-206ENST00000557958 PPIFP30405 207 aaKnown RBP13.06□□□□□ -0.32
LDLR-206ENST00000557958 FAM231DQ6ZW35 169 aa13.06□□□□□ -0.32
LDLR-206ENST00000557958 Q71RC1 249 aaPredicted RBP13.06□□□□□ -0.32
LDLR-206ENST00000557958 V9GYV3 84 aa13.06□□□□□ -0.32
LDLR-206ENST00000557958 CREBBPQ92793 2442 aa13.05□□□□□ -0.32
LDLR-206ENST00000557958 NOTCH2Q04721 2471 aa13.05□□□□□ -0.32
LDLR-206ENST00000557958 A0A0G2JLM5 398 aa13.05□□□□□ -0.32
LDLR-206ENST00000557958 PKIAP61925 76 aa13.05□□□□□ -0.32
LDLR-206ENST00000557958 BLCAPP62952 87 aa13.05□□□□□ -0.32
LDLR-206ENST00000557958 DEFA6Q01524 100 aa13.05□□□□□ -0.32
LDLR-206ENST00000557958 PDZD11Q5EBL8 140 aa13.05□□□□□ -0.32
LDLR-206ENST00000557958 SIGLEC15Q6ZMC9 328 aa13.05□□□□□ -0.32
LDLR-206ENST00000557958 EXOC3-AS1Q8N2X6 119 aa13.05□□□□□ -0.32
LDLR-206ENST00000557958 DUX5Q96PT3 197 aa13.05□□□□□ -0.32
LDLR-206ENST00000557958 METTL26Q96S19 204 aa13.05□□□□□ -0.32
LDLR-206ENST00000557958 ZFAND3Q9H8U3 227 aa13.05□□□□□ -0.32
LDLR-206ENST00000557958 SERTM2A0A1B0GWG4 89 aa13.04□□□□□ -0.32
LDLR-206ENST00000557958 ZNF320A2RRD8 509 aa13.04□□□□□ -0.32
LDLR-206ENST00000557958 SLC17A3O00476 420 aa13.04□□□□□ -0.32
LDLR-206ENST00000557958 ZNF253O75346 499 aa13.04□□□□□ -0.32
LDLR-206ENST00000557958 LTAP01374 205 aa13.04□□□□□ -0.32
LDLR-206ENST00000557958 CSN1S1P47710 185 aa13.04□□□□□ -0.32
LDLR-206ENST00000557958 ARL6IP6Q8N6S5 226 aa13.04□□□□□ -0.32
LDLR-206ENST00000557958 RNASE7Q9H1E1 156 aaKnown RBP13.04□□□□□ -0.32
LDLR-206ENST00000557958 ZNF705GA8MUZ8 300 aaPredicted RBP13.04□□□□□ -0.32
LDLR-206ENST00000557958 HOXA3O43365 443 aaPredicted RBP13.04□□□□□ -0.32
LDLR-206ENST00000557958 C1orf194Q5T5A4 169 aa13.04□□□□□ -0.32
LDLR-206ENST00000557958 Q6YL49 198 aa13.04□□□□□ -0.32
LDLR-206ENST00000557958 SIGLECL1Q8N7X8 197 aa13.04□□□□□ -0.32
LDLR-206ENST00000557958 NHLRC2Q8NBF2 726 aa13.04□□□□□ -0.32
LDLR-206ENST00000557958 NOL4LQ96MY1 436 aaPredicted RBP13.04□□□□□ -0.32
LDLR-206ENST00000557958 SERTAD4Q9NUC0 356 aa13.04□□□□□ -0.32
LDLR-206ENST00000557958 VPREB3Q9UKI3 123 aa13.04□□□□□ -0.32
LDLR-206ENST00000557958 FLNAP21333 2647 aaKnown RBP13.03□□□□□ -0.32
LDLR-206ENST00000557958 IGHV3-35A0A0C4DH35 117 aa13.03□□□□□ -0.32
LDLR-206ENST00000557958 TRBV6-1A0A0K0K1D8 114 aa13.03□□□□□ -0.32
LDLR-206ENST00000557958 LY6G6DO95868 133 aa13.03□□□□□ -0.32
LDLR-206ENST00000557958 PF4V1P10720 104 aa13.03□□□□□ -0.32
LDLR-206ENST00000557958 ARL3P36405 182 aa13.03□□□□□ -0.32
LDLR-206ENST00000557958 JOSD1Q15040 202 aaPredicted RBP13.03□□□□□ -0.32
LDLR-206ENST00000557958 ACTL10Q5JWF8 245 aa13.03□□□□□ -0.32
LDLR-206ENST00000557958 GOLT1AQ6ZVE7 132 aa13.03□□□□□ -0.32
LDLR-206ENST00000557958 TMEM75Q8N9X5 138 aa13.03□□□□□ -0.32
LDLR-206ENST00000557958 TSTD3H0UI37 97 aa13.02□□□□□ -0.32
LDLR-206ENST00000557958 IGLV1-40P01703 118 aa13.02□□□□□ -0.33
LDLR-206ENST00000557958 AMBPP02760 352 aa13.02□□□□□ -0.33
LDLR-206ENST00000557958 Q86TA4 180 aa13.02□□□□□ -0.33
LDLR-206ENST00000557958 C17orf77Q96MU5 243 aa13.02□□□□□ -0.33
LDLR-206ENST00000557958 MYO9AB2RTY4 2548 aa13.01□□□□□ -0.33
LDLR-206ENST00000557958 FBLL1A6NHQ2 334 aaKnown RBP13.01□□□□□ -0.33
LDLR-206ENST00000557958 BUB3O43684 328 aa13.01□□□□□ -0.33
LDLR-206ENST00000557958 RPL15P61313 204 aaKnown RBP13.01□□□□□ -0.33
LDLR-206ENST00000557958 ZFP30Q9Y2G7 519 aa13.01□□□□□ -0.33
LDLR-206ENST00000557958 A0A087X0K7 114 aa13□□□□□ -0.33
LDLR-206ENST00000557958 RBM14-RBM4A0A0A0MSL8 147 aaKnown RBP13□□□□□ -0.33
LDLR-206ENST00000557958 TMEM89A2RUT3 159 aa13□□□□□ -0.33
LDLR-206ENST00000557958 COX19Q49B96 90 aa13□□□□□ -0.33
LDLR-206ENST00000557958 PRR27Q6MZM9 219 aa13□□□□□ -0.33
LDLR-206ENST00000557958 REC114Q7Z4M0 266 aa13□□□□□ -0.33
LDLR-206ENST00000557958 DAZAP1Q96EP5 407 aaKnown RBP13□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 78.3 ms