RNA–Protein interactions for RNA: ENST00000557433.5

SHMT2-231, Transcript of serine hydroxymethyltransferase 2, human

TSL 1 (best)

Gene SHMT2, Length 1,904 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SHMT2-231	ENST00000557433	PRELID3A	Q96N28	172 aa		12.84	□□□□□ -0.35
SHMT2-231	ENST00000557433	FRY	Q5TBA9	3013 aa		12.83	□□□□□ -0.36
SHMT2-231	ENST00000557433	LY6L	H3BQJ8	138 aa		12.83	□□□□□ -0.36
SHMT2-231	ENST00000557433	CNIH1	O95406	144 aa		12.83	□□□□□ -0.36
SHMT2-231	ENST00000557433	HBD	P02042	147 aa		12.83	□□□□□ -0.36
SHMT2-231	ENST00000557433	HSD52	Q0P140	79 aa		12.83	□□□□□ -0.36
SHMT2-231	ENST00000557433	SIGLEC8	Q9NYZ4	499 aa		12.83	□□□□□ -0.36
SHMT2-231	ENST00000557433		B9A039	149 aa		12.82	□□□□□ -0.36
SHMT2-231	ENST00000557433	IFI27	P40305	119 aa	Predicted RBP	12.82	□□□□□ -0.36
SHMT2-231	ENST00000557433	SRSF2	Q01130	221 aa	Known RBP	12.82	□□□□□ -0.36
SHMT2-231	ENST00000557433	RNF151	Q2KHN1	245 aa		12.82	□□□□□ -0.36
SHMT2-231	ENST00000557433	LINC01559	Q495D7	138 aa		12.82	□□□□□ -0.36
SHMT2-231	ENST00000557433	AP1S3	Q96PC3	154 aa		12.82	□□□□□ -0.36
SHMT2-231	ENST00000557433	NCOR1	O75376	2440 aa		12.82	□□□□□ -0.36
SHMT2-231	ENST00000557433		A0A096LNJ9	63 aa		12.82	□□□□□ -0.36
SHMT2-231	ENST00000557433	GAGE12B	A1L429	117 aa		12.82	□□□□□ -0.36
SHMT2-231	ENST00000557433		D6R8Y8	96 aa		12.82	□□□□□ -0.36
SHMT2-231	ENST00000557433	IL4	P05112	153 aa		12.82	□□□□□ -0.36
SHMT2-231	ENST00000557433	S100A7	P31151	101 aa		12.82	□□□□□ -0.36
SHMT2-231	ENST00000557433	NHLH1	Q02575	133 aa		12.82	□□□□□ -0.36
SHMT2-231	ENST00000557433	PIFO	Q8TCI5	191 aa		12.82	□□□□□ -0.36
SHMT2-231	ENST00000557433	TRAV8-6	A0A0B4J262	113 aa		12.81	□□□□□ -0.36
SHMT2-231	ENST00000557433	C9orf118	A6NHY6	69 aa		12.81	□□□□□ -0.36
SHMT2-231	ENST00000557433	SHISA9	B4DS77	424 aa		12.81	□□□□□ -0.36
SHMT2-231	ENST00000557433	SCGB2A1	O75556	95 aa		12.81	□□□□□ -0.36
SHMT2-231	ENST00000557433	NCR2	O95944	276 aa		12.81	□□□□□ -0.36
SHMT2-231	ENST00000557433	LYZL1	Q6UWQ5	148 aa		12.81	□□□□□ -0.36
SHMT2-231	ENST00000557433	C17orf77	Q96MU5	243 aa		12.81	□□□□□ -0.36
SHMT2-231	ENST00000557433	VPS25	Q9BRG1	176 aa		12.81	□□□□□ -0.36
SHMT2-231	ENST00000557433	MCRIP2	Q9BUT9	160 aa	Known RBP	12.81	□□□□□ -0.36
SHMT2-231	ENST00000557433	GAGE10	A6NGK3	116 aa		12.8	□□□□□ -0.36
SHMT2-231	ENST00000557433	SMAD7	O15105	426 aa	Known RBP	12.8	□□□□□ -0.36
SHMT2-231	ENST00000557433	BMI1	P35226	326 aa		12.8	□□□□□ -0.36
SHMT2-231	ENST00000557433	OR8A1	Q8NGG7	326 aa		12.8	□□□□□ -0.36
SHMT2-231	ENST00000557433	TIMM8B	Q9Y5J9	83 aa	Predicted RBP	12.8	□□□□□ -0.36
SHMT2-231	ENST00000557433	ICE1	Q9Y2F5	2266 aa		12.8	□□□□□ -0.36
SHMT2-231	ENST00000557433	PPIAL4C	A0A0B4J2A2	164 aa		12.8	□□□□□ -0.36
SHMT2-231	ENST00000557433		A1L4Q6	167 aa		12.8	□□□□□ -0.36
SHMT2-231	ENST00000557433		E7EQL1	145 aa		12.8	□□□□□ -0.36
SHMT2-231	ENST00000557433	SH2D1A	O60880	128 aa		12.8	□□□□□ -0.36
SHMT2-231	ENST00000557433	PPIAL4G	P0DN37	164 aa		12.8	□□□□□ -0.36
SHMT2-231	ENST00000557433	FCGR2B	P31994	310 aa	Predicted RBP	12.8	□□□□□ -0.36
SHMT2-231	ENST00000557433	MFAP4	P55083	255 aa		12.8	□□□□□ -0.36
SHMT2-231	ENST00000557433	NPB	Q8NG41	125 aa		12.8	□□□□□ -0.36
SHMT2-231	ENST00000557433	TPPP3	Q9BW30	176 aa		12.8	□□□□□ -0.36
SHMT2-231	ENST00000557433	SVIL	O95425	2214 aa		12.79	□□□□□ -0.36
SHMT2-231	ENST00000557433	NPIPB5	A8MRT5	1133 aa		12.79	□□□□□ -0.36
SHMT2-231	ENST00000557433	NBR2	O15453	112 aa		12.79	□□□□□ -0.36
SHMT2-231	ENST00000557433	GNG7	O60262	68 aa		12.79	□□□□□ -0.36
SHMT2-231	ENST00000557433	RPL7	P18124	248 aa	Known RBP	12.79	□□□□□ -0.36
SHMT2-231	ENST00000557433	CEACAM3	P40198	252 aa		12.79	□□□□□ -0.36
SHMT2-231	ENST00000557433	PAX8	Q06710	450 aa		12.79	□□□□□ -0.36
SHMT2-231	ENST00000557433	IGFBPL1	Q8WX77	278 aa		12.79	□□□□□ -0.36
SHMT2-231	ENST00000557433	RABAC1	Q9UI14	185 aa		12.79	□□□□□ -0.36
SHMT2-231	ENST00000557433	LINC01546	A6NGU7	62 aa		12.78	□□□□□ -0.36
SHMT2-231	ENST00000557433	NDUFA3	O95167	84 aa		12.78	□□□□□ -0.36
SHMT2-231	ENST00000557433	MRPL51	Q4U2R6	128 aa	Known RBP	12.78	□□□□□ -0.36
SHMT2-231	ENST00000557433	UFSP1	Q6NVU6	142 aa		12.78	□□□□□ -0.36
SHMT2-231	ENST00000557433		Q71RC1	249 aa	Predicted RBP	12.78	□□□□□ -0.36
SHMT2-231	ENST00000557433	IFI27L1	Q96BM0	104 aa		12.78	□□□□□ -0.36
SHMT2-231	ENST00000557433	C8orf49	Q96NF6	230 aa		12.78	□□□□□ -0.36
SHMT2-231	ENST00000557433	COX7A1	P24310	79 aa		12.78	□□□□□ -0.36
SHMT2-231	ENST00000557433	ERAS	Q7Z444	233 aa		12.78	□□□□□ -0.36
SHMT2-231	ENST00000557433	AMN1	Q8IY45	258 aa		12.78	□□□□□ -0.36
SHMT2-231	ENST00000557433		M0R3E3	92 aa		12.77	□□□□□ -0.37
SHMT2-231	ENST00000557433	DMD	P11532	3685 aa		12.77	□□□□□ -0.37
SHMT2-231	ENST00000557433	LOC389332	A0A1B0GUA5	103 aa		12.76	□□□□□ -0.37
SHMT2-231	ENST00000557433	TMEM213	A2RRL7	107 aa		12.76	□□□□□ -0.37
SHMT2-231	ENST00000557433	TIMM23	O14925	209 aa		12.76	□□□□□ -0.37
SHMT2-231	ENST00000557433	CKS2	P33552	79 aa		12.76	□□□□□ -0.37
SHMT2-231	ENST00000557433	CACNG7	P62955	275 aa		12.76	□□□□□ -0.37
SHMT2-231	ENST00000557433	PIP4P2	Q8N4L2	257 aa		12.76	□□□□□ -0.37
SHMT2-231	ENST00000557433	FER1L6-AS1	Q8NA97	138 aa		12.76	□□□□□ -0.37
SHMT2-231	ENST00000557433	PRR25	Q96S07	402 aa		12.76	□□□□□ -0.37
SHMT2-231	ENST00000557433	DPM3	Q9P2X0	92 aa		12.76	□□□□□ -0.37
SHMT2-231	ENST00000557433	ARFGEF3	Q5TH69	2177 aa		12.76	□□□□□ -0.37
SHMT2-231	ENST00000557433	PLXNB1	O43157	2135 aa		12.76	□□□□□ -0.37
SHMT2-231	ENST00000557433	CELSR3	Q9NYQ7	3312 aa		12.76	□□□□□ -0.37
SHMT2-231	ENST00000557433	IGLV11-55	A0A075B6I3	123 aa		12.76	□□□□□ -0.37
SHMT2-231	ENST00000557433	FAM106CP	P0CH98	169 aa		12.76	□□□□□ -0.37
SHMT2-231	ENST00000557433	FAM106A	Q4KMX7	169 aa		12.76	□□□□□ -0.37
SHMT2-231	ENST00000557433	GFRAL	Q6UXV0	394 aa		12.76	□□□□□ -0.37
SHMT2-231	ENST00000557433	LY6G5B	Q8NDX9	201 aa		12.76	□□□□□ -0.37
SHMT2-231	ENST00000557433	OR11H6	Q8NGC7	330 aa		12.76	□□□□□ -0.37
SHMT2-231	ENST00000557433	CNFN	Q9BYD5	112 aa		12.76	□□□□□ -0.37
SHMT2-231	ENST00000557433	THYN1	Q9P016	225 aa		12.76	□□□□□ -0.37
SHMT2-231	ENST00000557433		K7EP34	96 aa		12.75	□□□□□ -0.37
SHMT2-231	ENST00000557433	IGLC6	P0CF74	106 aa		12.75	□□□□□ -0.37
SHMT2-231	ENST00000557433	LOXL1	Q08397	574 aa	Predicted RBP	12.75	□□□□□ -0.37
SHMT2-231	ENST00000557433	ADAMTSL5	Q6ZMM2	481 aa		12.75	□□□□□ -0.37
SHMT2-231	ENST00000557433	OR5A1	Q8NGJ0	315 aa		12.75	□□□□□ -0.37
SHMT2-231	ENST00000557433	MAP1LC3A	Q9H492	121 aa		12.75	□□□□□ -0.37
SHMT2-231	ENST00000557433	MALRD1	Q5VYJ5	2156 aa		12.75	□□□□□ -0.37
SHMT2-231	ENST00000557433	CD3E	P07766	207 aa		12.74	□□□□□ -0.37
SHMT2-231	ENST00000557433	TTC9C	Q8N5M4	171 aa		12.74	□□□□□ -0.37
SHMT2-231	ENST00000557433	CFHR4	Q92496	578 aa		12.74	□□□□□ -0.37
SHMT2-231	ENST00000557433	NXT2	Q9NPJ8	142 aa	Known RBP	12.74	□□□□□ -0.37
SHMT2-231	ENST00000557433	HIGD1B	Q9P298	99 aa		12.74	□□□□□ -0.37
SHMT2-231	ENST00000557433	SNAI2	O43623	268 aa		12.73	□□□□□ -0.37
SHMT2-231	ENST00000557433	NDUFS7	O75251	213 aa		12.73	□□□□□ -0.37

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