RNA–Protein interactions for RNA: ENST00000556210.1

CUX1-215, Transcript of cut like homeobox 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CUX1, Length 4,044 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-215ENST00000556210 NPIPB5A8MRT5 1133 aa11.9□□□□□ -0.5
CUX1-215ENST00000556210 PCSK5Q92824 1860 aa11.9□□□□□ -0.5
CUX1-215ENST00000556210 ABCA12Q86UK0 2595 aa11.9□□□□□ -0.5
CUX1-215ENST00000556210 IGKV2-40A0A087WW87 121 aaPredicted RBP11.9□□□□□ -0.5
CUX1-215ENST00000556210 IGKV2D-40P01614 121 aaPredicted RBP11.9□□□□□ -0.5
CUX1-215ENST00000556210 ORAOV1Q8WV07 137 aa11.9□□□□□ -0.5
CUX1-215ENST00000556210 GAGE10A6NGK3 116 aa11.89□□□□□ -0.51
CUX1-215ENST00000556210 HLA-DRB1P01911 266 aa11.89□□□□□ -0.51
CUX1-215ENST00000556210 TMEM30BQ3MIR4 351 aa11.89□□□□□ -0.51
CUX1-215ENST00000556210 ARPC1AQ92747 370 aa11.89□□□□□ -0.51
CUX1-215ENST00000556210 TP53TG3Q9ULZ0 132 aa11.89□□□□□ -0.51
CUX1-215ENST00000556210 SHISA9B4DS77 424 aa11.89□□□□□ -0.51
CUX1-215ENST00000556210 RIGQ13278 110 aa11.89□□□□□ -0.51
CUX1-215ENST00000556210 SCGB2A2Q13296 93 aa11.89□□□□□ -0.51
CUX1-215ENST00000556210 BRD3OSQ6XYD6 125 aa11.89□□□□□ -0.51
CUX1-215ENST00000556210 C11orf52Q96A22 123 aa11.89□□□□□ -0.51
CUX1-215ENST00000556210 COX11Q9Y6N1 276 aa11.89□□□□□ -0.51
CUX1-215ENST00000556210 CEACAM4O75871 244 aa11.89□□□□□ -0.51
CUX1-215ENST00000556210 TMEM249Q2WGJ8 235 aa11.89□□□□□ -0.51
CUX1-215ENST00000556210 TEX36Q5VZQ5 186 aa11.89□□□□□ -0.51
CUX1-215ENST00000556210 CCDC144NLQ6NUI1 221 aa11.89□□□□□ -0.51
CUX1-215ENST00000556210 ZNF329Q86UD4 541 aa11.89□□□□□ -0.51
CUX1-215ENST00000556210 Q8NA96 180 aa11.89□□□□□ -0.51
CUX1-215ENST00000556210 C1RLQ9NZP8 487 aa11.89□□□□□ -0.51
CUX1-215ENST00000556210 C22orf46C9J442 243 aa11.89□□□□□ -0.51
CUX1-215ENST00000556210 PRSS1P07477 247 aa11.89□□□□□ -0.51
CUX1-215ENST00000556210 RAB37Q96AX2 223 aa11.89□□□□□ -0.51
CUX1-215ENST00000556210 ADAMTS20P59510 1910 aa11.88□□□□□ -0.51
CUX1-215ENST00000556210 FAM106CPP0CH98 169 aa11.88□□□□□ -0.51
CUX1-215ENST00000556210 PF4V1P10720 104 aa11.88□□□□□ -0.51
CUX1-215ENST00000556210 IGLL1P15814 213 aa11.88□□□□□ -0.51
CUX1-215ENST00000556210 EIF4EBP1Q13541 118 aaPredicted RBP11.88□□□□□ -0.51
CUX1-215ENST00000556210 WFDC12Q8WWY7 111 aa11.88□□□□□ -0.51
CUX1-215ENST00000556210 ATP5IP56385 69 aaPredicted RBP11.88□□□□□ -0.51
CUX1-215ENST00000556210 TCRAP04437 139 aa11.88□□□□□ -0.51
CUX1-215ENST00000556210 CKS2P33552 79 aa11.88□□□□□ -0.51
CUX1-215ENST00000556210 PATE2Q6UY27 113 aa11.88□□□□□ -0.51
CUX1-215ENST00000556210 KLK15Q9H2R5 256 aa11.88□□□□□ -0.51
CUX1-215ENST00000556210 F11RQ9Y624 299 aaKnown RBP11.88□□□□□ -0.51
CUX1-215ENST00000556210 TACC2O95359 2948 aa11.87□□□□□ -0.51
CUX1-215ENST00000556210 K7ENP7 123 aa11.87□□□□□ -0.51
CUX1-215ENST00000556210 CCL25O15444 150 aa11.87□□□□□ -0.51
CUX1-215ENST00000556210 IGKV3-20P01619 116 aa11.87□□□□□ -0.51
CUX1-215ENST00000556210 C8orf46Q8TAG6 207 aa11.87□□□□□ -0.51
CUX1-215ENST00000556210 RPL24P83731 157 aaKnown RBP11.87□□□□□ -0.51
CUX1-215ENST00000556210 AMMECR1LQ6DCA0 310 aa11.87□□□□□ -0.51
CUX1-215ENST00000556210 A1L4Q6 167 aa11.87□□□□□ -0.51
CUX1-215ENST00000556210 CGB3P0DN86 165 aa11.87□□□□□ -0.51
CUX1-215ENST00000556210 CGB7P0DN87 165 aa11.87□□□□□ -0.51
CUX1-215ENST00000556210 COMPP49747 757 aaPredicted RBP11.87□□□□□ -0.51
CUX1-215ENST00000556210 SAPCD1Q5SSQ6 148 aa11.87□□□□□ -0.51
CUX1-215ENST00000556210 AP5S1Q9NUS5 200 aa11.87□□□□□ -0.51
CUX1-215ENST00000556210 MRPL27Q9P0M9 148 aaKnown RBP11.87□□□□□ -0.51
CUX1-215ENST00000556210 RABAC1Q9UI14 185 aa11.87□□□□□ -0.51
CUX1-215ENST00000556210 GOSR1O95249 250 aa11.86□□□□□ -0.51
CUX1-215ENST00000556210 NDPQ00604 133 aa11.86□□□□□ -0.51
CUX1-215ENST00000556210 FBLL1A6NHQ2 334 aaKnown RBP11.86□□□□□ -0.51
CUX1-215ENST00000556210 APOHP02749 345 aaPredicted RBP11.86□□□□□ -0.51
CUX1-215ENST00000556210 VMO1Q7Z5L0 202 aa11.86□□□□□ -0.51
CUX1-215ENST00000556210 RNASE8Q8TDE3 154 aaKnown RBP11.86□□□□□ -0.51
CUX1-215ENST00000556210 GLMPQ8WWB7 406 aa11.86□□□□□ -0.51
CUX1-215ENST00000556210 SRD5A1P18405 259 aa11.86□□□□□ -0.51
CUX1-215ENST00000556210 NMUP48645 174 aa11.86□□□□□ -0.51
CUX1-215ENST00000556210 GTF2H5Q6ZYL4 71 aa11.86□□□□□ -0.51
CUX1-215ENST00000556210 PSG8Q9UQ74 426 aa11.86□□□□□ -0.51
CUX1-215ENST00000556210 MRPS16Q9Y3D3 137 aaKnown RBP11.86□□□□□ -0.51
CUX1-215ENST00000556210 EPG5Q9HCE0 2579 aa11.85□□□□□ -0.51
CUX1-215ENST00000556210 COL12A1Q99715 3063 aa11.85□□□□□ -0.51
CUX1-215ENST00000556210 PAX1P15863 534 aa11.85□□□□□ -0.51
CUX1-215ENST00000556210 A0A1B0GUT8 65 aa11.85□□□□□ -0.51
CUX1-215ENST00000556210 ITGB1BP1O14713 200 aa11.85□□□□□ -0.51
CUX1-215ENST00000556210 ZNF503Q96F45 646 aa11.85□□□□□ -0.51
CUX1-215ENST00000556210 RNF114Q9Y508 228 aa11.85□□□□□ -0.51
CUX1-215ENST00000556210 IGLC7A0M8Q6 106 aa11.85□□□□□ -0.51
CUX1-215ENST00000556210 NCR2O95944 276 aa11.85□□□□□ -0.51
CUX1-215ENST00000556210 TMEM116Q8NCL8 245 aa11.85□□□□□ -0.51
CUX1-215ENST00000556210 A0A087X0K7 114 aa11.84□□□□□ -0.51
CUX1-215ENST00000556210 NACAE9PAV3 2078 aa11.84□□□□□ -0.51
CUX1-215ENST00000556210 RBPMS2Q6ZRY4 209 aaKnown RBP11.84□□□□□ -0.51
CUX1-215ENST00000556210 RHOGP84095 191 aa11.84□□□□□ -0.51
CUX1-215ENST00000556210 C16orf92Q96LL3 132 aa11.84□□□□□ -0.51
CUX1-215ENST00000556210 BPESC1Q9GZL8 116 aa11.84□□□□□ -0.51
CUX1-215ENST00000556210 G3V318 75 aa11.83□□□□□ -0.51
CUX1-215ENST00000556210 FXYD5Q96DB9 178 aa11.83□□□□□ -0.51
CUX1-215ENST00000556210 NAA38Q9BRA0 125 aaKnown RBP11.83□□□□□ -0.51
CUX1-215ENST00000556210 SMIM27A0A1W2PRY6 76 aa11.83□□□□□ -0.52
CUX1-215ENST00000556210 A6NDN8 102 aa11.83□□□□□ -0.52
CUX1-215ENST00000556210 F5H697 171 aa11.83□□□□□ -0.52
CUX1-215ENST00000556210 SMKR1H3BMG3 65 aa11.83□□□□□ -0.52
CUX1-215ENST00000556210 RPL7P18124 248 aaKnown RBP11.83□□□□□ -0.52
CUX1-215ENST00000556210 ATP5J2P56134 94 aa11.83□□□□□ -0.52
CUX1-215ENST00000556210 C15orf32Q32M92 178 aa11.83□□□□□ -0.52
CUX1-215ENST00000556210 TM4SF20Q53R12 229 aa11.83□□□□□ -0.52
CUX1-215ENST00000556210 SPANXN1Q5VSR9 72 aa11.83□□□□□ -0.52
CUX1-215ENST00000556210 MTORP42345 2549 aa11.83□□□□□ -0.52
CUX1-215ENST00000556210 UCNP55089 124 aa11.83□□□□□ -0.52
CUX1-215ENST00000556210 EBLN2Q6P2I7 272 aa11.83□□□□□ -0.52
CUX1-215ENST00000556210 SYS1-DBNDD2H3BUS1 97 aa11.83□□□□□ -0.52
CUX1-215ENST00000556210 ESDP10768 282 aa11.83□□□□□ -0.52
CUX1-215ENST00000556210 ST20Q9HBF5 79 aa11.83□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 30 ms