RNA–Protein interactions for RNA: ENST00000555550.1

SCFD1-216, Transcript of sec1 family domain containing 1, humanhuman

TSL 4

Gene SCFD1, Length 541 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-216ENST00000555550 TRGV10A0A0A0MS01 117 aa0.3□□□□□ -2.36
SCFD1-216ENST00000555550 TRDV1A0A1B0GX56 115 aa0.3□□□□□ -2.36
SCFD1-216ENST00000555550 ODAMA1E959 279 aa0.3□□□□□ -2.36
SCFD1-216ENST00000555550 PRORSD1PA6NEY8 169 aa0.3□□□□□ -2.36
SCFD1-216ENST00000555550 PPP5D1E7EU14 171 aa0.3□□□□□ -2.36
SCFD1-216ENST00000555550 K7ERJ3 54 aa0.3□□□□□ -2.36
SCFD1-216ENST00000555550 NDUFB3O43676 98 aa0.3□□□□□ -2.36
SCFD1-216ENST00000555550 SULT1B1O43704 296 aa0.3□□□□□ -2.36
SCFD1-216ENST00000555550 TIMM17BO60830 172 aa0.3□□□□□ -2.36
SCFD1-216ENST00000555550 RPS3P23396 243 aaKnown RBP eCLIP0.3□□□□□ -2.36
SCFD1-216ENST00000555550 NFYBP25208 207 aa0.3□□□□□ -2.36
SCFD1-216ENST00000555550 S100A4P26447 101 aaKnown RBP0.3□□□□□ -2.36
SCFD1-216ENST00000555550 EIF5AP63241 154 aaKnown RBP0.3□□□□□ -2.36
SCFD1-216ENST00000555550 SPA17Q15506 151 aa0.3□□□□□ -2.36
SCFD1-216ENST00000555550 MSMO1Q15800 293 aa0.3□□□□□ -2.36
SCFD1-216ENST00000555550 FKBP1CQ5VVH2 108 aa0.3□□□□□ -2.36
SCFD1-216ENST00000555550 DPPA3Q6W0C5 159 aa0.3□□□□□ -2.36
SCFD1-216ENST00000555550 C12orf29Q8N999 325 aa0.3□□□□□ -2.36
SCFD1-216ENST00000555550 POP5Q969H6 163 aaKnown RBP0.3□□□□□ -2.36
SCFD1-216ENST00000555550 RMND5BQ96G75 393 aaPredicted RBP0.3□□□□□ -2.36
SCFD1-216ENST00000555550 LINC00052Q96N35 136 aa0.3□□□□□ -2.36
SCFD1-216ENST00000555550 MRPL57Q9BQC6 102 aaKnown RBP0.3□□□□□ -2.36
SCFD1-216ENST00000555550 LINC00467Q9BRT7 94 aa0.3□□□□□ -2.36
SCFD1-216ENST00000555550 DDA1Q9BW61 102 aa0.3□□□□□ -2.36
SCFD1-216ENST00000555550 PCBD2Q9H0N5 130 aa0.3□□□□□ -2.36
SCFD1-216ENST00000555550 TRABDQ9H4I3 376 aa0.3□□□□□ -2.36
SCFD1-216ENST00000555550 POPDC3Q9HBV1 291 aa0.3□□□□□ -2.36
SCFD1-216ENST00000555550 ZFP30Q9Y2G7 519 aa0.3□□□□□ -2.36
SCFD1-216ENST00000555550 ANKRD31Q8N7Z5 1873 aa0.3□□□□□ -2.36
SCFD1-216ENST00000555550 MYH10P35580 1976 aa0.3□□□□□ -2.36
SCFD1-216ENST00000555550 FAM135BQ49AJ0 1406 aa0.3□□□□□ -2.36
SCFD1-216ENST00000555550 TRAPPC8Q9Y2L5 1435 aa0.3□□□□□ -2.36
SCFD1-216ENST00000555550 TENM4Q6N022 2769 aa0.29□□□□□ -2.36
SCFD1-216ENST00000555550 CAMSAP2Q08AD1 1489 aa0.29□□□□□ -2.36
SCFD1-216ENST00000555550 TCOF1Q13428 1488 aaKnown RBP0.29□□□□□ -2.36
SCFD1-216ENST00000555550 SIP14410 1827 aa0.29□□□□□ -2.36
SCFD1-216ENST00000555550 XIRP1Q702N8 1843 aaKnown RBP0.29□□□□□ -2.36
SCFD1-216ENST00000555550 MYO5AQ9Y4I1 1855 aaKnown RBP0.29□□□□□ -2.36
SCFD1-216ENST00000555550 UNC13CQ8NB66 2214 aa0.29□□□□□ -2.36
SCFD1-216ENST00000555550 ABCA12Q86UK0 2595 aa0.29□□□□□ -2.36
SCFD1-216ENST00000555550 MAST4O15021 2626 aa0.29□□□□□ -2.36
SCFD1-216ENST00000555550 MYLKQ15746 1914 aa0.29□□□□□ -2.36
SCFD1-216ENST00000555550 CASP8AP2Q9UKL3 1982 aa0.29□□□□□ -2.36
SCFD1-216ENST00000555550 TRBV6-4A0A1B0GX49 114 aa0.29□□□□□ -2.36
SCFD1-216ENST00000555550 FUOMA2VDF0 154 aa0.29□□□□□ -2.36
SCFD1-216ENST00000555550 RIIAD1A6NNX1 92 aa0.29□□□□□ -2.36
SCFD1-216ENST00000555550 CCL25O15444 150 aa0.29□□□□□ -2.36
SCFD1-216ENST00000555550 NUPR1O60356 82 aa0.29□□□□□ -2.36
SCFD1-216ENST00000555550 GGCTO75223 188 aaKnown RBP0.29□□□□□ -2.36
SCFD1-216ENST00000555550 NDUFC2O95298 119 aa0.29□□□□□ -2.36
SCFD1-216ENST00000555550 SERPINB1P30740 379 aa0.29□□□□□ -2.36
SCFD1-216ENST00000555550 VBP1P61758 197 aa0.29□□□□□ -2.36
SCFD1-216ENST00000555550 AKR1C8PQ5T2L2 129 aa0.29□□□□□ -2.36
SCFD1-216ENST00000555550 LYRM7Q5U5X0 104 aa0.29□□□□□ -2.36
SCFD1-216ENST00000555550 SBSPONQ8IVN8 264 aa0.29□□□□□ -2.36
SCFD1-216ENST00000555550 LINC00301Q8NCQ3 95 aa0.29□□□□□ -2.36
SCFD1-216ENST00000555550 OR13C6PQ8NH95 151 aa0.29□□□□□ -2.36
SCFD1-216ENST00000555550 MALSU1Q96EH3 234 aa0.29□□□□□ -2.36
SCFD1-216ENST00000555550 BORCS8Q96FH0 119 aa0.29□□□□□ -2.36
SCFD1-216ENST00000555550 LINC00526Q96FQ7 95 aa0.29□□□□□ -2.36
SCFD1-216ENST00000555550 YPEL2Q96QA6 119 aa0.29□□□□□ -2.36
SCFD1-216ENST00000555550 PHB2Q99623 299 aa0.29□□□□□ -2.36
SCFD1-216ENST00000555550 SLC25A21Q9BQT8 299 aaPredicted RBP0.29□□□□□ -2.36
SCFD1-216ENST00000555550 NPCDR1Q9BY65 106 aa0.29□□□□□ -2.36
SCFD1-216ENST00000555550 OR2J1Q9GZK6 312 aa0.29□□□□□ -2.36
SCFD1-216ENST00000555550 CENPHQ9H3R5 247 aa0.29□□□□□ -2.36
SCFD1-216ENST00000555550 BIN3Q9NQY0 253 aa0.29□□□□□ -2.36
SCFD1-216ENST00000555550 OR5AC2Q9NZP5 309 aa0.29□□□□□ -2.36
SCFD1-216ENST00000555550 SETD2Q9BYW2 2564 aaPredicted RBP0.29□□□□□ -2.36
SCFD1-216ENST00000555550 CNTRLQ7Z7A1 2325 aa0.29□□□□□ -2.36
SCFD1-216ENST00000555550 USP54Q70EL1 1684 aa0.28□□□□□ -2.36
SCFD1-216ENST00000555550 TRAV14DV4A0A0A6YYC5 116 aa0.28□□□□□ -2.36
SCFD1-216ENST00000555550 G3V2T6 193 aa0.28□□□□□ -2.36
SCFD1-216ENST00000555550 PGRMC1O00264 195 aaKnown RBP0.28□□□□□ -2.36
SCFD1-216ENST00000555550 HYPMO75409 117 aa0.28□□□□□ -2.36
SCFD1-216ENST00000555550 CST7O76096 145 aa0.28□□□□□ -2.36
SCFD1-216ENST00000555550 IDO1P14902 403 aa0.28□□□□□ -2.36
SCFD1-216ENST00000555550 RPL7P18124 248 aaKnown RBP0.28□□□□□ -2.36
SCFD1-216ENST00000555550 OGNP20774 298 aaKnown RBP0.28□□□□□ -2.36
SCFD1-216ENST00000555550 BRS3P32247 399 aa0.28□□□□□ -2.36
SCFD1-216ENST00000555550 SRP14P37108 136 aaKnown RBP0.28□□□□□ -2.36
SCFD1-216ENST00000555550 POLR2HP52434 150 aaKnown RBP0.28□□□□□ -2.36
SCFD1-216ENST00000555550 C3orf33Q6P1S2 294 aa0.28□□□□□ -2.36
SCFD1-216ENST00000555550 HRCT1Q6UXD1 115 aa0.28□□□□□ -2.36
SCFD1-216ENST00000555550 Q8N6K4 173 aa0.28□□□□□ -2.36
SCFD1-216ENST00000555550 THEM6Q8WUY1 208 aa0.28□□□□□ -2.36
SCFD1-216ENST00000555550 ZHX1-C8orf76Q96EF9 292 aa0.28□□□□□ -2.36
SCFD1-216ENST00000555550 HYLS1Q96M11 299 aa0.28□□□□□ -2.36
SCFD1-216ENST00000555550 GINS4Q9BRT9 223 aa0.28□□□□□ -2.36
SCFD1-216ENST00000555550 OR2H1Q9GZK4 316 aa0.28□□□□□ -2.36
SCFD1-216ENST00000555550 NIT2Q9NQR4 276 aa0.28□□□□□ -2.36
SCFD1-216ENST00000555550 SSR3Q9UNL2 185 aa0.28□□□□□ -2.36
SCFD1-216ENST00000555550 NDUFAF1Q9Y375 327 aa0.28□□□□□ -2.36
SCFD1-216ENST00000555550 NUBP2Q9Y5Y2 271 aa0.28□□□□□ -2.36
SCFD1-216ENST00000555550 LAMA4Q16363 1823 aa0.28□□□□□ -2.36
SCFD1-216ENST00000555550 MGAMO43451 1857 aa0.28□□□□□ -2.36
SCFD1-216ENST00000555550 BCL9O00512 1426 aa0.28□□□□□ -2.37
SCFD1-216ENST00000555550 ZNF462Q96JM2 2506 aa0.27□□□□□ -2.37
SCFD1-216ENST00000555550 MUC12Q9UKN1 5478 aa0.27□□□□□ -2.37
SCFD1-216ENST00000555550 TRAV10A0A0B4J240 114 aa0.27□□□□□ -2.37
Retrieved 100 of 20,778 RNA–protein pairs in 29.1 ms