RNA–Protein interactions for RNA: ENST00000553683.1

VRK1-202, Transcript of vaccinia related kinase 1, humanhuman

TSL 3

Gene VRK1, Length 247 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK1-202ENST00000553683 NUDT2P50583 147 aa1.32□□□□□ -2.2
VRK1-202ENST00000553683 TPPP2P59282 170 aa1.32□□□□□ -2.2
VRK1-202ENST00000553683 HERVK_113P63121 156 aa1.32□□□□□ -2.2
VRK1-202ENST00000553683 MYL5Q02045 173 aa1.32□□□□□ -2.2
VRK1-202ENST00000553683 Q0VG73 95 aa1.32□□□□□ -2.2
VRK1-202ENST00000553683 FOXF1Q12946 379 aa1.32□□□□□ -2.2
VRK1-202ENST00000553683 EIF3IQ13347 325 aaKnown RBP1.32□□□□□ -2.2
VRK1-202ENST00000553683 C1DQ13901 141 aaKnown RBP1.32□□□□□ -2.2
VRK1-202ENST00000553683 SPANXN3Q5MJ09 141 aa1.32□□□□□ -2.2
VRK1-202ENST00000553683 FKBP1CQ5VVH2 108 aa1.32□□□□□ -2.2
VRK1-202ENST00000553683 CRYBG3Q68DQ2 2970 aa1.32□□□□□ -2.2
VRK1-202ENST00000553683 XAF1Q6GPH4 301 aa1.32□□□□□ -2.2
VRK1-202ENST00000553683 LCN8Q6JVE9 175 aa1.32□□□□□ -2.2
VRK1-202ENST00000553683 SBSNQ6UWP8 590 aa1.32□□□□□ -2.2
VRK1-202ENST00000553683 AMTNQ6UX39 209 aa1.32□□□□□ -2.2
VRK1-202ENST00000553683 RPS19BP1Q86WX3 136 aaKnown RBP1.32□□□□□ -2.2
VRK1-202ENST00000553683 KCNRGQ8N5I3 272 aa1.32□□□□□ -2.2
VRK1-202ENST00000553683 LINC00311Q8N616 119 aa1.32□□□□□ -2.2
VRK1-202ENST00000553683 LINC00337Q8N6G1 96 aa1.32□□□□□ -2.2
VRK1-202ENST00000553683 TEX29Q8N6K0 151 aa1.32□□□□□ -2.2
VRK1-202ENST00000553683 LY6G5BQ8NDX9 201 aa1.32□□□□□ -2.2
VRK1-202ENST00000553683 OR5D14Q8NGL3 314 aa1.32□□□□□ -2.2
VRK1-202ENST00000553683 OR1J4Q8NGS1 313 aa1.32□□□□□ -2.2
VRK1-202ENST00000553683 OR5AK2Q8NH90 309 aa1.32□□□□□ -2.2
VRK1-202ENST00000553683 LRRC29Q8WV35 223 aa1.32□□□□□ -2.2
VRK1-202ENST00000553683 SLC25A44Q96H78 314 aaPredicted RBP1.32□□□□□ -2.2
VRK1-202ENST00000553683 ERMAPQ96PL5 475 aaPredicted RBP1.32□□□□□ -2.2
VRK1-202ENST00000553683 OR2A7Q96R45 310 aa1.32□□□□□ -2.2
VRK1-202ENST00000553683 SHANK2-AS3Q9BTD1 123 aa1.32□□□□□ -2.2
VRK1-202ENST00000553683 TMEM70Q9BUB7 260 aa1.32□□□□□ -2.2
VRK1-202ENST00000553683 VAMP8Q9BV40 100 aa1.32□□□□□ -2.2
VRK1-202ENST00000553683 TMEM147Q9BVK8 224 aa1.32□□□□□ -2.2
VRK1-202ENST00000553683 AICDAQ9GZX7 198 aa1.32□□□□□ -2.2
VRK1-202ENST00000553683 TMEM191AQ9H0A3 160 aa1.32□□□□□ -2.2
VRK1-202ENST00000553683 PRO3102Q9H379 93 aa1.32□□□□□ -2.2
VRK1-202ENST00000553683 BANF2Q9H503 90 aa1.32□□□□□ -2.2
VRK1-202ENST00000553683 KCNIP2Q9NS61 270 aa1.32□□□□□ -2.2
VRK1-202ENST00000553683 UQCR10Q9UDW1 63 aa1.32□□□□□ -2.2
VRK1-202ENST00000553683 FUT9Q9Y231 359 aa1.32□□□□□ -2.2
VRK1-202ENST00000553683 AMMECR1Q9Y4X0 333 aaPredicted RBP1.32□□□□□ -2.2
VRK1-202ENST00000553683 SOX21Q9Y651 276 aaPredicted RBP1.32□□□□□ -2.2
VRK1-202ENST00000553683 SPG11Q96JI7 2443 aa1.32□□□□□ -2.2
VRK1-202ENST00000553683 NBEAL2Q6ZNJ1 2754 aa1.32□□□□□ -2.2
VRK1-202ENST00000553683 LRRC37A3O60309 1634 aa1.32□□□□□ -2.2
VRK1-202ENST00000553683 YLPM1P49750 1951 aaKnown RBP1.32□□□□□ -2.2
VRK1-202ENST00000553683 MYO15AQ9UKN7 3530 aa1.32□□□□□ -2.2
VRK1-202ENST00000553683 CNOT1A5YKK6 2376 aaKnown RBP1.32□□□□□ -2.2
VRK1-202ENST00000553683 TECPR2O15040 1411 aa1.32□□□□□ -2.2
VRK1-202ENST00000553683 RIC1Q4ADV7 1423 aa1.32□□□□□ -2.2
VRK1-202ENST00000553683 AKAP12Q02952 1782 aa1.31□□□□□ -2.2
VRK1-202ENST00000553683 COL12A1Q99715 3063 aa1.31□□□□□ -2.2
VRK1-202ENST00000553683 PDZD2O15018 2839 aa1.31□□□□□ -2.2
VRK1-202ENST00000553683 PRR14LQ5THK1 2151 aa1.31□□□□□ -2.2
VRK1-202ENST00000553683 NEXMIFQ5QGS0 1516 aa1.31□□□□□ -2.2
VRK1-202ENST00000553683 ASXL1Q8IXJ9 1541 aa1.31□□□□□ -2.2
VRK1-202ENST00000553683 NAV1Q8NEY1 1877 aa1.31□□□□□ -2.2
VRK1-202ENST00000553683 SAMD9LQ8IVG5 1584 aa1.31□□□□□ -2.2
VRK1-202ENST00000553683 INO80Q9ULG1 1556 aaPredicted RBP1.31□□□□□ -2.2
VRK1-202ENST00000553683 MROH1Q8NDA8 1641 aa1.31□□□□□ -2.2
VRK1-202ENST00000553683 hCG_1818297A0A087WSY0 165 aa1.31□□□□□ -2.2
VRK1-202ENST00000553683 TRAV8-2A0A0B4J237 113 aa1.31□□□□□ -2.2
VRK1-202ENST00000553683 MUC21A0A0G2JKD1 596 aa1.31□□□□□ -2.2
VRK1-202ENST00000553683 C5orf49A4QMS7 147 aa1.31□□□□□ -2.2
VRK1-202ENST00000553683 KNCNA6PVL3 124 aa1.31□□□□□ -2.2
VRK1-202ENST00000553683 A8MT66 165 aa1.31□□□□□ -2.2
VRK1-202ENST00000553683 TMEM262E9PQX1 116 aa1.31□□□□□ -2.2
VRK1-202ENST00000553683 F5H5P2 479 aa1.31□□□□□ -2.2
VRK1-202ENST00000553683 GABARAPH6UMI1 98 aa1.31□□□□□ -2.2
VRK1-202ENST00000553683 K7EP34 96 aa1.31□□□□□ -2.2
VRK1-202ENST00000553683 M0R2P5 195 aa1.31□□□□□ -2.2
VRK1-202ENST00000553683 FFAR1O14842 300 aa1.31□□□□□ -2.2
VRK1-202ENST00000553683 PLA2G10O15496 165 aa1.31□□□□□ -2.2
VRK1-202ENST00000553683 PITX3O75364 302 aa1.31□□□□□ -2.2
VRK1-202ENST00000553683 HYPMO75409 117 aa1.31□□□□□ -2.2
VRK1-202ENST00000553683 HLA-DRB1P01911 266 aa1.31□□□□□ -2.2
VRK1-202ENST00000553683 IGLV7-43P04211 117 aa1.31□□□□□ -2.2
VRK1-202ENST00000553683 IFITM1P13164 125 aa1.31□□□□□ -2.2
VRK1-202ENST00000553683 CTSEP14091 401 aa1.31□□□□□ -2.2
VRK1-202ENST00000553683 PSMB9P28065 219 aa1.31□□□□□ -2.2
VRK1-202ENST00000553683 ZNF93P35789 620 aaPredicted RBP1.31□□□□□ -2.2
VRK1-202ENST00000553683 PPP1CCP36873 323 aaKnown RBP1.31□□□□□ -2.2
VRK1-202ENST00000553683 POLR2IP36954 125 aaKnown RBP1.31□□□□□ -2.2
VRK1-202ENST00000553683 SNCAP37840 140 aa1.31□□□□□ -2.2
VRK1-202ENST00000553683 INSL3P51460 131 aa1.31□□□□□ -2.2
VRK1-202ENST00000553683 RBM11P57052 281 aaKnown RBP1.31□□□□□ -2.2
VRK1-202ENST00000553683 DAD1P61803 113 aa1.31□□□□□ -2.2
VRK1-202ENST00000553683 FKBP1AP62942 108 aaKnown RBP1.31□□□□□ -2.2
VRK1-202ENST00000553683 HLA-DRB3P79483 266 aa1.31□□□□□ -2.2
VRK1-202ENST00000553683 PLGLB1Q02325 96 aa1.31□□□□□ -2.2
VRK1-202ENST00000553683 ATP5G2Q06055 141 aa1.31□□□□□ -2.2
VRK1-202ENST00000553683 HMGN3Q15651 99 aa1.31□□□□□ -2.2
VRK1-202ENST00000553683 RRN3P1Q2M238 152 aa1.31□□□□□ -2.2
VRK1-202ENST00000553683 KRTAP21-3Q3LHN1 58 aa1.31□□□□□ -2.2
VRK1-202ENST00000553683 LINC00303Q3SY05 128 aa1.31□□□□□ -2.2
VRK1-202ENST00000553683 CENPWQ5EE01 88 aa1.31□□□□□ -2.2
VRK1-202ENST00000553683 TTC32Q5I0X7 151 aa1.31□□□□□ -2.2
VRK1-202ENST00000553683 ZNF660Q6AZW8 331 aaPredicted RBP1.31□□□□□ -2.2
VRK1-202ENST00000553683 LCN15Q6UWW0 184 aa1.31□□□□□ -2.2
VRK1-202ENST00000553683 SLC25A26Q70HW3 274 aa1.31□□□□□ -2.2
VRK1-202ENST00000553683 VN1R4Q7Z5H5 301 aa1.31□□□□□ -2.2
Retrieved 100 of 20,778 RNA–protein pairs in 38.6 ms