RNA–Protein interactions for RNA: ENST00000553576.5

VIPAS39-204, Transcript of VPS33B interacting protein, apical-basolateral polarity regulator, spe-39 homolog, humanhuman

TSL 4

Gene VIPAS39, Length 547 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIPAS39-204ENST00000553576 LRRC75A-AS1Q8N1F1 130 aa4.67□□□□□ -1.66
VIPAS39-204ENST00000553576 TMEM75Q8N9X5 138 aa4.67□□□□□ -1.66
VIPAS39-204ENST00000553576 NUDT10Q8NFP7 164 aa4.67□□□□□ -1.66
VIPAS39-204ENST00000553576 NUDT11Q96G61 164 aa4.67□□□□□ -1.66
VIPAS39-204ENST00000553576 RNASE7Q9H1E1 156 aaKnown RBP4.67□□□□□ -1.66
VIPAS39-204ENST00000553576 ZFP30Q9Y2G7 519 aa4.67□□□□□ -1.66
VIPAS39-204ENST00000553576 IGSF10Q6WRI0 2623 aa4.67□□□□□ -1.66
VIPAS39-204ENST00000553576 PRRC2AP48634 2157 aaKnown RBP4.67□□□□□ -1.66
VIPAS39-204ENST00000553576 ZFHX3Q15911 3703 aa4.66□□□□□ -1.66
VIPAS39-204ENST00000553576 A0A087X0K7 114 aa4.66□□□□□ -1.66
VIPAS39-204ENST00000553576 TRAV34A0A0B4J273 112 aa4.66□□□□□ -1.66
VIPAS39-204ENST00000553576 FAM223BA6NKX1 122 aa4.66□□□□□ -1.66
VIPAS39-204ENST00000553576 LINC01548A6NM66 108 aa4.66□□□□□ -1.66
VIPAS39-204ENST00000553576 ZNF705GA8MUZ8 300 aaPredicted RBP4.66□□□□□ -1.66
VIPAS39-204ENST00000553576 A8MWL6 223 aa4.66□□□□□ -1.66
VIPAS39-204ENST00000553576 DIRC3C9JPN6 131 aa4.66□□□□□ -1.66
VIPAS39-204ENST00000553576 BMPR1BO00238 502 aa4.66□□□□□ -1.66
VIPAS39-204ENST00000553576 PRB1P04280 392 aa4.66□□□□□ -1.66
VIPAS39-204ENST00000553576 MGST1P10620 155 aaKnown RBP4.66□□□□□ -1.66
VIPAS39-204ENST00000553576 ESDP10768 282 aa4.66□□□□□ -1.66
VIPAS39-204ENST00000553576 HNF1AP20823 631 aa4.66□□□□□ -1.66
VIPAS39-204ENST00000553576 S100A2P29034 98 aa4.66□□□□□ -1.66
VIPAS39-204ENST00000553576 PPIFP30405 207 aaKnown RBP4.66□□□□□ -1.66
VIPAS39-204ENST00000553576 RHOGP84095 191 aa4.66□□□□□ -1.66
VIPAS39-204ENST00000553576 PSG9Q00887 426 aa4.66□□□□□ -1.66
VIPAS39-204ENST00000553576 LOXL1Q08397 574 aaPredicted RBP4.66□□□□□ -1.66
VIPAS39-204ENST00000553576 Q0VG73 95 aa4.66□□□□□ -1.66
VIPAS39-204ENST00000553576 C15orf32Q32M92 178 aa4.66□□□□□ -1.66
VIPAS39-204ENST00000553576 C1orf194Q5T5A4 169 aa4.66□□□□□ -1.66
VIPAS39-204ENST00000553576 LEMD1Q68G75 181 aa4.66□□□□□ -1.66
VIPAS39-204ENST00000553576 C16orf54Q6UWD8 224 aa4.66□□□□□ -1.66
VIPAS39-204ENST00000553576 FAM223AQ8IWN6 122 aa4.66□□□□□ -1.66
VIPAS39-204ENST00000553576 OR4B1Q8NGF8 309 aa4.66□□□□□ -1.66
VIPAS39-204ENST00000553576 TSKUQ8WUA8 353 aa4.66□□□□□ -1.66
VIPAS39-204ENST00000553576 EEF1AKMT3Q96AZ1 226 aa4.66□□□□□ -1.66
VIPAS39-204ENST00000553576 PACRGQ96M98 296 aaPredicted RBP4.66□□□□□ -1.66
VIPAS39-204ENST00000553576 GPR61Q9BZJ8 451 aa4.66□□□□□ -1.66
VIPAS39-204ENST00000553576 GFRA4Q9GZZ7 299 aa4.66□□□□□ -1.66
VIPAS39-204ENST00000553576 BEX4Q9NWD9 120 aaPredicted RBP4.66□□□□□ -1.66
VIPAS39-204ENST00000553576 RABAC1Q9UI14 185 aa4.66□□□□□ -1.66
VIPAS39-204ENST00000553576 ASH1LQ9NR48 2969 aaKnown RBP4.65□□□□□ -1.66
VIPAS39-204ENST00000553576 VPS13CQ709C8 3753 aa4.65□□□□□ -1.66
VIPAS39-204ENST00000553576 TRAV41A0A0B4J266 112 aa4.65□□□□□ -1.67
VIPAS39-204ENST00000553576 TRAV40A0A0B4J280 105 aa4.65□□□□□ -1.67
VIPAS39-204ENST00000553576 XKRY2A2RUG3 117 aa4.65□□□□□ -1.67
VIPAS39-204ENST00000553576 OR2T8A6NH00 312 aa4.65□□□□□ -1.67
VIPAS39-204ENST00000553576 G3V318 75 aa4.65□□□□□ -1.67
VIPAS39-204ENST00000553576 K7EQM0 130 aa4.65□□□□□ -1.67
VIPAS39-204ENST00000553576 BUB3O43684 328 aa4.65□□□□□ -1.67
VIPAS39-204ENST00000553576 HLA-DQA1P01909 254 aa4.65□□□□□ -1.67
VIPAS39-204ENST00000553576 CLEC3BP05452 202 aa4.65□□□□□ -1.67
VIPAS39-204ENST00000553576 IGHV4-38-2P0DP08 117 aa4.65□□□□□ -1.67
VIPAS39-204ENST00000553576 SLURP1P55000 103 aa4.65□□□□□ -1.67
VIPAS39-204ENST00000553576 GNG5P63218 68 aa4.65□□□□□ -1.67
VIPAS39-204ENST00000553576 RELQ04864 619 aaPredicted RBP4.65□□□□□ -1.67
VIPAS39-204ENST00000553576 ATP5G2Q06055 141 aa4.65□□□□□ -1.67
VIPAS39-204ENST00000553576 PSG3Q16557 428 aa4.65□□□□□ -1.67
VIPAS39-204ENST00000553576 ANKRD39Q53RE8 183 aa4.65□□□□□ -1.67
VIPAS39-204ENST00000553576 GFI1BQ5VTD9 330 aa4.65□□□□□ -1.67
VIPAS39-204ENST00000553576 PRSS57Q6UWY2 283 aa4.65□□□□□ -1.67
VIPAS39-204ENST00000553576 TOMM20LQ6UXN7 152 aa4.65□□□□□ -1.67
VIPAS39-204ENST00000553576 TMEM136Q6ZRR5 245 aa4.65□□□□□ -1.67
VIPAS39-204ENST00000553576 ATP5L2Q7Z4Y8 100 aa4.65□□□□□ -1.67
VIPAS39-204ENST00000553576 OR8I2Q8N0Y5 310 aa4.65□□□□□ -1.67
VIPAS39-204ENST00000553576 BCL6BQ8N143 479 aaPredicted RBP4.65□□□□□ -1.67
VIPAS39-204ENST00000553576 EXOC3-AS1Q8N2X6 119 aa4.65□□□□□ -1.67
VIPAS39-204ENST00000553576 NUP35Q8NFH5 326 aa4.65□□□□□ -1.67
VIPAS39-204ENST00000553576 CMTM2Q8TAZ6 248 aa4.65□□□□□ -1.67
VIPAS39-204ENST00000553576 USMG5Q96IX5 58 aa4.65□□□□□ -1.67
VIPAS39-204ENST00000553576 CCDC140Q96MF4 163 aa4.65□□□□□ -1.67
VIPAS39-204ENST00000553576 C17orf77Q96MU5 243 aa4.65□□□□□ -1.67
VIPAS39-204ENST00000553576 HIST1H2BLQ99880 126 aa4.65□□□□□ -1.67
VIPAS39-204ENST00000553576 HIF1ANQ9NWT6 349 aa4.65□□□□□ -1.67
VIPAS39-204ENST00000553576 NAT8BQ9UHF3 227 aa4.65□□□□□ -1.67
VIPAS39-204ENST00000553576 SOX21Q9Y651 276 aaPredicted RBP4.65□□□□□ -1.67
VIPAS39-204ENST00000553576 SMAD5-AS1Q9Y6J3 95 aa4.65□□□□□ -1.67
VIPAS39-204ENST00000553576 SPTAN1Q13813 2472 aaKnown RBP4.65□□□□□ -1.67
VIPAS39-204ENST00000553576 CSMD1Q96PZ7 3565 aa4.64□□□□□ -1.67
VIPAS39-204ENST00000553576 CLPSL1A2RUU4 121 aa4.64□□□□□ -1.67
VIPAS39-204ENST00000553576 ZNF785A8K8V0 405 aa4.64□□□□□ -1.67
VIPAS39-204ENST00000553576 AMBPP02760 352 aa4.64□□□□□ -1.67
VIPAS39-204ENST00000553576 IER3P46695 156 aa4.64□□□□□ -1.67
VIPAS39-204ENST00000553576 PAFAH1B2P68402 229 aa4.64□□□□□ -1.67
VIPAS39-204ENST00000553576 ECSCRQ19T08 205 aa4.64□□□□□ -1.67
VIPAS39-204ENST00000553576 OR10J3Q5JRS4 329 aa4.64□□□□□ -1.67
VIPAS39-204ENST00000553576 BRD3OSQ6XYD6 125 aa4.64□□□□□ -1.67
VIPAS39-204ENST00000553576 LINC00322Q6ZN03 302 aaPredicted RBP4.64□□□□□ -1.67
VIPAS39-204ENST00000553576 C9orf139Q6ZV77 190 aa4.64□□□□□ -1.67
VIPAS39-204ENST00000553576 Q86TA4 180 aa4.64□□□□□ -1.67
VIPAS39-204ENST00000553576 GBGT1Q8N5D6 347 aa4.64□□□□□ -1.67
VIPAS39-204ENST00000553576 OR10D4PQ8NGN7 298 aa4.64□□□□□ -1.67
VIPAS39-204ENST00000553576 DAZAP1Q96EP5 407 aaKnown RBP4.64□□□□□ -1.67
VIPAS39-204ENST00000553576 PRDM13Q9H4Q3 707 aa4.64□□□□□ -1.67
VIPAS39-204ENST00000553576 RPP21Q9H633 154 aaKnown RBP4.64□□□□□ -1.67
VIPAS39-204ENST00000553576 AAMDCQ9H7C9 122 aa4.64□□□□□ -1.67
VIPAS39-204ENST00000553576 ZNF331Q9NQX6 463 aaPredicted RBP4.64□□□□□ -1.67
VIPAS39-204ENST00000553576 SERTAD4Q9NUC0 356 aa4.64□□□□□ -1.67
VIPAS39-204ENST00000553576 PPP1R14DQ9NXH3 145 aa4.64□□□□□ -1.67
VIPAS39-204ENST00000553576 CLEC5AQ9NY25 188 aa4.64□□□□□ -1.67
VIPAS39-204ENST00000553576 PSG8Q9UQ74 426 aa4.64□□□□□ -1.67
Retrieved 100 of 20,778 RNA–protein pairs in 35.3 ms