RNA–Protein interactions for RNA: ENST00000552338.5

LIMA1-211, Transcript of LIM domain and actin binding 1, humanhuman

TSL 4

Gene LIMA1, Length 555 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-211ENST00000552338 NDUFB4O95168 129 aa7.2□□□□□ -1.26
LIMA1-211ENST00000552338 LEMD1Q68G75 181 aa7.2□□□□□ -1.26
LIMA1-211ENST00000552338 LCN15Q6UWW0 184 aa7.2□□□□□ -1.26
LIMA1-211ENST00000552338 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa7.2□□□□□ -1.26
LIMA1-211ENST00000552338 TCF24Q7RTU0 167 aa7.2□□□□□ -1.26
LIMA1-211ENST00000552338 SPAG8Q99932 426 aaPredicted RBP7.2□□□□□ -1.26
LIMA1-211ENST00000552338 SLC50A1Q9BRV3 221 aa7.2□□□□□ -1.26
LIMA1-211ENST00000552338 NRN1Q9NPD7 142 aa7.2□□□□□ -1.26
LIMA1-211ENST00000552338 ZNF331Q9NQX6 463 aaPredicted RBP7.2□□□□□ -1.26
LIMA1-211ENST00000552338 K7EQG2 157 aa7.19□□□□□ -1.26
LIMA1-211ENST00000552338 OR7C2O60412 319 aa7.19□□□□□ -1.26
LIMA1-211ENST00000552338 PYYP10082 97 aa7.19□□□□□ -1.26
LIMA1-211ENST00000552338 CD33P20138 364 aa7.19□□□□□ -1.26
LIMA1-211ENST00000552338 BEAN1Q3B7T3 259 aa7.19□□□□□ -1.26
LIMA1-211ENST00000552338 CD300EQ496F6 205 aaPredicted RBP7.19□□□□□ -1.26
LIMA1-211ENST00000552338 CCDC28AQ8IWP9 274 aa7.19□□□□□ -1.26
LIMA1-211ENST00000552338 TMEM61Q8N0U2 210 aa7.19□□□□□ -1.26
LIMA1-211ENST00000552338 MRPL53Q96EL3 112 aaKnown RBP7.19□□□□□ -1.26
LIMA1-211ENST00000552338 TCEAL7Q9BRU2 100 aa7.19□□□□□ -1.26
LIMA1-211ENST00000552338 SMDT1Q9H4I9 107 aa7.19□□□□□ -1.26
LIMA1-211ENST00000552338 ZNF256Q9Y2P7 627 aaPredicted RBP7.19□□□□□ -1.26
LIMA1-211ENST00000552338 IGHV3OR16-13A0A075B7E8 117 aa7.18□□□□□ -1.26
LIMA1-211ENST00000552338 IGHV3-49A0A0A0MS15 119 aa7.18□□□□□ -1.26
LIMA1-211ENST00000552338 IGHV3-74A0A0B4J1X5 117 aa7.18□□□□□ -1.26
LIMA1-211ENST00000552338 LINC00862A6NCI5 91 aa7.18□□□□□ -1.26
LIMA1-211ENST00000552338 ISLRO14498 428 aa7.18□□□□□ -1.26
LIMA1-211ENST00000552338 SAP30O75446 220 aa7.18□□□□□ -1.26
LIMA1-211ENST00000552338 ATF4P18848 351 aaPredicted RBP7.18□□□□□ -1.26
LIMA1-211ENST00000552338 CMC4P56277 68 aaPredicted RBP7.18□□□□□ -1.26
LIMA1-211ENST00000552338 RAB14P61106 215 aa7.18□□□□□ -1.26
LIMA1-211ENST00000552338 UBE2L3P68036 154 aaKnown RBP7.18□□□□□ -1.26
LIMA1-211ENST00000552338 PAFAH1B2P68402 229 aa7.18□□□□□ -1.26
LIMA1-211ENST00000552338 CCL20P78556 96 aa7.18□□□□□ -1.26
LIMA1-211ENST00000552338 PSG9Q00887 426 aa7.18□□□□□ -1.26
LIMA1-211ENST00000552338 EGFEM1PQ0D2K5 195 aa7.18□□□□□ -1.26
LIMA1-211ENST00000552338 LCN12Q6JVE5 192 aa7.18□□□□□ -1.26
LIMA1-211ENST00000552338 FAM210AQ96ND0 272 aa7.18□□□□□ -1.26
LIMA1-211ENST00000552338 MS4A6AQ9H2W1 248 aa7.18□□□□□ -1.26
LIMA1-211ENST00000552338 TMPRSS5Q9H3S3 457 aa7.18□□□□□ -1.26
LIMA1-211ENST00000552338 MANBALQ9NQG1 85 aa7.18□□□□□ -1.26
LIMA1-211ENST00000552338 PRELID1Q9Y255 219 aa7.18□□□□□ -1.26
LIMA1-211ENST00000552338 TRAV8-2A0A0B4J237 113 aa7.17□□□□□ -1.26
LIMA1-211ENST00000552338 IGHV3-66A0A0C4DH42 116 aa7.17□□□□□ -1.26
LIMA1-211ENST00000552338 RAB19A4D1S5 217 aa7.17□□□□□ -1.26
LIMA1-211ENST00000552338 FAM74A7A6NL05 159 aa7.17□□□□□ -1.26
LIMA1-211ENST00000552338 HMGB3O15347 200 aaKnown RBP7.17□□□□□ -1.26
LIMA1-211ENST00000552338 OR10J4P0C629 311 aa7.17□□□□□ -1.26
LIMA1-211ENST00000552338 FGF8P55075 233 aaPredicted RBP7.17□□□□□ -1.26
LIMA1-211ENST00000552338 RBPMS2Q6ZRY4 209 aaKnown RBP7.17□□□□□ -1.26
LIMA1-211ENST00000552338 EIF4E3Q8N5X7 224 aaKnown RBP7.17□□□□□ -1.26
LIMA1-211ENST00000552338 DYNLRB2Q8TF09 96 aa7.17□□□□□ -1.26
LIMA1-211ENST00000552338 OTORQ9NRC9 128 aa7.17□□□□□ -1.26
LIMA1-211ENST00000552338 PPP1R14DQ9NXH3 145 aa7.17□□□□□ -1.26
LIMA1-211ENST00000552338 ZMAT5Q9UDW3 170 aaKnown RBP7.17□□□□□ -1.26
LIMA1-211ENST00000552338 ANK2Q01484 3957 aa7.16□□□□□ -1.26
LIMA1-211ENST00000552338 NOTCH3Q9UM47 2321 aa7.16□□□□□ -1.26
LIMA1-211ENST00000552338 EIF3GO75821 320 aaKnown RBP eCLIP7.16□□□□□ -1.26
LIMA1-211ENST00000552338 ZNF506Q5JVG8 444 aa7.16□□□□□ -1.26
LIMA1-211ENST00000552338 CLUHP3Q96NS8 147 aa7.16□□□□□ -1.26
LIMA1-211ENST00000552338 C19orf73Q9NVV2 129 aa7.16□□□□□ -1.26
LIMA1-211ENST00000552338 VAX2Q9UIW0 290 aa7.16□□□□□ -1.26
LIMA1-211ENST00000552338 LOC102723971A0A1B0GUV8 181 aa7.15□□□□□ -1.26
LIMA1-211ENST00000552338 SERTM2A0A1B0GWG4 89 aa7.15□□□□□ -1.26
LIMA1-211ENST00000552338 RBAKDNA6NC62 111 aa7.15□□□□□ -1.26
LIMA1-211ENST00000552338 IZUMO1RA6ND01 250 aa7.15□□□□□ -1.26
LIMA1-211ENST00000552338 RBFOX3A6NFN3 312 aa7.15□□□□□ -1.26
LIMA1-211ENST00000552338 OR4C46A6NHA9 309 aa7.15□□□□□ -1.26
LIMA1-211ENST00000552338 A8MTW9 85 aa7.15□□□□□ -1.26
LIMA1-211ENST00000552338 GGTLC3B5MD39 225 aa7.15□□□□□ -1.26
LIMA1-211ENST00000552338 SLC17A3O00476 420 aa7.15□□□□□ -1.26
LIMA1-211ENST00000552338 IFNA1P01562 189 aa7.15□□□□□ -1.26
LIMA1-211ENST00000552338 BCL2P10415 239 aa7.15□□□□□ -1.26
LIMA1-211ENST00000552338 ID1P41134 155 aa7.15□□□□□ -1.26
LIMA1-211ENST00000552338 PSG3Q16557 428 aa7.15□□□□□ -1.26
LIMA1-211ENST00000552338 KPRPQ5T749 579 aaPredicted RBP7.15□□□□□ -1.26
LIMA1-211ENST00000552338 SAMD5Q5TGI4 173 aa7.15□□□□□ -1.26
LIMA1-211ENST00000552338 RXFP4Q8TDU9 374 aa7.15□□□□□ -1.26
LIMA1-211ENST00000552338 C11orf52Q96A22 123 aa7.15□□□□□ -1.26
LIMA1-211ENST00000552338 Q9H3A6 140 aa7.15□□□□□ -1.26
LIMA1-211ENST00000552338 YTHDF2Q9Y5A9 579 aaKnown RBP7.15□□□□□ -1.26
LIMA1-211ENST00000552338 PGPA6NDG6 321 aa7.14□□□□□ -1.27
LIMA1-211ENST00000552338 DNASE2O00115 360 aaPredicted RBP7.14□□□□□ -1.27
LIMA1-211ENST00000552338 PAGE4O60829 102 aa7.14□□□□□ -1.27
LIMA1-211ENST00000552338 SLC25A5P05141 298 aaKnown RBP7.14□□□□□ -1.27
LIMA1-211ENST00000552338 IGLL1P15814 213 aa7.14□□□□□ -1.27
LIMA1-211ENST00000552338 CD81P60033 236 aa7.14□□□□□ -1.27
LIMA1-211ENST00000552338 SNRPD3P62318 126 aaKnown RBP7.14□□□□□ -1.27
LIMA1-211ENST00000552338 RANP62826 216 aaKnown RBP7.14□□□□□ -1.27
LIMA1-211ENST00000552338 SUMO1P63165 101 aaKnown RBP7.14□□□□□ -1.27
LIMA1-211ENST00000552338 MEF2BQ02080 365 aaPredicted RBP7.14□□□□□ -1.27
LIMA1-211ENST00000552338 C5orf17Q8NAS9 161 aa7.14□□□□□ -1.27
LIMA1-211ENST00000552338 HIST1H2BAQ96A08 127 aa7.14□□□□□ -1.27
LIMA1-211ENST00000552338 C16orf92Q96LL3 132 aa7.14□□□□□ -1.27
LIMA1-211ENST00000552338 AAMDCQ9H7C9 122 aa7.14□□□□□ -1.27
LIMA1-211ENST00000552338 KLF12Q9Y4X4 402 aa7.14□□□□□ -1.27
LIMA1-211ENST00000552338 TRBV7-9A0A0J9YWB2 115 aa7.13□□□□□ -1.27
LIMA1-211ENST00000552338 TRBV6-1A0A0K0K1D8 114 aa7.13□□□□□ -1.27
LIMA1-211ENST00000552338 FBLL1A6NHQ2 334 aaKnown RBP7.13□□□□□ -1.27
LIMA1-211ENST00000552338 TMEM250H0YL14 139 aa7.13□□□□□ -1.27
LIMA1-211ENST00000552338 PDE6DO43924 150 aa7.13□□□□□ -1.27
Retrieved 100 of 20,778 RNA–protein pairs in 37 ms