RNA–Protein interactions for RNA: ENST00000552008.5

LIMA1-209, Transcript of LIM domain and actin binding 1, humanhuman

TSL 5

Gene LIMA1, Length 566 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-209ENST00000552008 ZNF418Q8TF45 676 aaPredicted RBP1.1□□□□□ -2.23
LIMA1-209ENST00000552008 ARL11Q969Q4 196 aa1.1□□□□□ -2.23
LIMA1-209ENST00000552008 BTF3L4Q96K17 158 aa1.1□□□□□ -2.23
LIMA1-209ENST00000552008 TMEM56Q96MV1 263 aa1.1□□□□□ -2.23
LIMA1-209ENST00000552008 ZNF714Q96N38 554 aa1.1□□□□□ -2.23
LIMA1-209ENST00000552008 ZNF251Q9BRH9 671 aa1.1□□□□□ -2.23
LIMA1-209ENST00000552008 COMMD5Q9GZQ3 224 aa1.1□□□□□ -2.23
LIMA1-209ENST00000552008 ARL6Q9H0F7 186 aa1.1□□□□□ -2.23
LIMA1-209ENST00000552008 MED28Q9H204 178 aa1.1□□□□□ -2.23
LIMA1-209ENST00000552008 OR51E2Q9H255 320 aa1.1□□□□□ -2.23
LIMA1-209ENST00000552008 OR51B6Q9H340 312 aa1.1□□□□□ -2.23
LIMA1-209ENST00000552008 PROK2Q9HC23 129 aa1.1□□□□□ -2.23
LIMA1-209ENST00000552008 MRPL16Q9NX20 251 aaKnown RBP1.1□□□□□ -2.23
LIMA1-209ENST00000552008 FAM206AQ9NX38 181 aa1.1□□□□□ -2.23
LIMA1-209ENST00000552008 TAS2R4Q9NYW5 299 aa1.1□□□□□ -2.23
LIMA1-209ENST00000552008 CARHSP1Q9Y2V2 147 aaKnown RBP1.1□□□□□ -2.23
LIMA1-209ENST00000552008 NUBP2Q9Y5Y2 271 aa1.1□□□□□ -2.23
LIMA1-209ENST00000552008 LHFPL6Q9Y693 200 aa1.1□□□□□ -2.23
LIMA1-209ENST00000552008 MINOS1-NBL1R4GNA1 71 aa1.1□□□□□ -2.23
LIMA1-209ENST00000552008 URGCP-MRPS24S4R325 110 aa1.1□□□□□ -2.23
LIMA1-209ENST00000552008 ZNF638Q14966 1978 aaKnown RBP1.1□□□□□ -2.23
LIMA1-209ENST00000552008 COL5A1P20908 1838 aaPredicted RBP1.1□□□□□ -2.23
LIMA1-209ENST00000552008 PDCD11Q14690 1871 aaKnown RBP1.09□□□□□ -2.23
LIMA1-209ENST00000552008 DNAH12Q6ZR08 3092 aa1.09□□□□□ -2.23
LIMA1-209ENST00000552008 TET1Q8NFU7 2136 aa1.09□□□□□ -2.23
LIMA1-209ENST00000552008 IGLV3-9A0A075B6K5 115 aa1.09□□□□□ -2.23
LIMA1-209ENST00000552008 TRAV30A0A087WSZ9 112 aa1.09□□□□□ -2.23
LIMA1-209ENST00000552008 A0A0G2JMM0 328 aa1.09□□□□□ -2.23
LIMA1-209ENST00000552008 LINC00854A0A1B0GVQ3 168 aa1.09□□□□□ -2.23
LIMA1-209ENST00000552008 A0A1W2PPB8 328 aa1.09□□□□□ -2.23
LIMA1-209ENST00000552008 DUXBA0A1W2PPF3 345 aa1.09□□□□□ -2.23
LIMA1-209ENST00000552008 A0A1W2PRS3 328 aa1.09□□□□□ -2.23
LIMA1-209ENST00000552008 ODAMA1E959 279 aa1.09□□□□□ -2.23
LIMA1-209ENST00000552008 DPRXA6NFQ7 191 aa1.09□□□□□ -2.23
LIMA1-209ENST00000552008 RFPL4AA6NLU0 287 aa1.09□□□□□ -2.23
LIMA1-209ENST00000552008 SNRPGP15A8MWD9 76 aa1.09□□□□□ -2.23
LIMA1-209ENST00000552008 KIR3DP1A8MWS1 328 aa1.09□□□□□ -2.23
LIMA1-209ENST00000552008 C17orf112F2Z3M2 114 aa1.09□□□□□ -2.23
LIMA1-209ENST00000552008 RFPL4AL1F8VTS6 287 aa1.09□□□□□ -2.23
LIMA1-209ENST00000552008 INMT-MINDY4F8WBC2 141 aa1.09□□□□□ -2.23
LIMA1-209ENST00000552008 GPR31O00270 319 aa1.09□□□□□ -2.23
LIMA1-209ENST00000552008 ITGB1BP1O14713 200 aa1.09□□□□□ -2.23
LIMA1-209ENST00000552008 LYRM1O43325 122 aa1.09□□□□□ -2.23
LIMA1-209ENST00000552008 TGOLN2O43493 480 aa1.09□□□□□ -2.23
LIMA1-209ENST00000552008 GSTZ1O43708 216 aaPredicted RBP1.09□□□□□ -2.23
LIMA1-209ENST00000552008 YPEL1O60688 119 aa1.09□□□□□ -2.23
LIMA1-209ENST00000552008 HPGDSO60760 199 aa1.09□□□□□ -2.23
LIMA1-209ENST00000552008 IFNA17P01571 189 aa1.09□□□□□ -2.23
LIMA1-209ENST00000552008 TTRP02766 147 aa1.09□□□□□ -2.23
LIMA1-209ENST00000552008 S100A8P05109 93 aa1.09□□□□□ -2.23
LIMA1-209ENST00000552008 CSN2P05814 226 aa1.09□□□□□ -2.23
LIMA1-209ENST00000552008 MSMBP08118 114 aa1.09□□□□□ -2.23
LIMA1-209ENST00000552008 HIST1H1BP16401 226 aaKnown RBP1.09□□□□□ -2.23
LIMA1-209ENST00000552008 HIST1H1DP16402 221 aaKnown RBP1.09□□□□□ -2.23
LIMA1-209ENST00000552008 NFYBP25208 207 aa1.09□□□□□ -2.23
LIMA1-209ENST00000552008 AKR1D1P51857 326 aa1.09□□□□□ -2.23
LIMA1-209ENST00000552008 AKR1C2P52895 323 aa1.09□□□□□ -2.23
LIMA1-209ENST00000552008 CAV3P56539 151 aa1.09□□□□□ -2.23
LIMA1-209ENST00000552008 RBM11P57052 281 aaKnown RBP1.09□□□□□ -2.23
LIMA1-209ENST00000552008 TAS2R20P59543 309 aa1.09□□□□□ -2.23
LIMA1-209ENST00000552008 NCS1P62166 190 aa1.09□□□□□ -2.23
LIMA1-209ENST00000552008 DHRS2Q13268 280 aa1.09□□□□□ -2.23
LIMA1-209ENST00000552008 HES1Q14469 280 aa1.09□□□□□ -2.23
LIMA1-209ENST00000552008 MMDQ15546 238 aa1.09□□□□□ -2.23
LIMA1-209ENST00000552008 CLEC12BQ2HXU8 276 aa1.09□□□□□ -2.23
LIMA1-209ENST00000552008 DEFB113Q30KQ7 82 aa1.09□□□□□ -2.23
LIMA1-209ENST00000552008 TMEM128Q5BJH2 165 aa1.09□□□□□ -2.23
LIMA1-209ENST00000552008 FAM74A1Q5RGS3 127 aa1.09□□□□□ -2.23
LIMA1-209ENST00000552008 AADACL3Q5VUY0 350 aa1.09□□□□□ -2.23
LIMA1-209ENST00000552008 SAMD13Q5VXD3 122 aa1.09□□□□□ -2.23
LIMA1-209ENST00000552008 TMEM42Q69YG0 159 aa1.09□□□□□ -2.23
LIMA1-209ENST00000552008 SPNS3Q6ZMD2 512 aa1.09□□□□□ -2.23
LIMA1-209ENST00000552008 IDO2Q6ZQW0 420 aa1.09□□□□□ -2.23
LIMA1-209ENST00000552008 TMED4Q7Z7H5 227 aa1.09□□□□□ -2.23
LIMA1-209ENST00000552008 DEFB108BQ8NET1 73 aa1.09□□□□□ -2.23
LIMA1-209ENST00000552008 OR4S1Q8NGB4 309 aa1.09□□□□□ -2.23
LIMA1-209ENST00000552008 OR5D18Q8NGL1 313 aa1.09□□□□□ -2.23
LIMA1-209ENST00000552008 OR4P4Q8NGL7 312 aa1.09□□□□□ -2.23
LIMA1-209ENST00000552008 OR2T10Q8NGZ9 312 aa1.09□□□□□ -2.23
LIMA1-209ENST00000552008 DYNC2LI1Q8TCX1 351 aa1.09□□□□□ -2.23
LIMA1-209ENST00000552008 AQP3Q92482 292 aa1.09□□□□□ -2.23
LIMA1-209ENST00000552008 SLC7A6Q92536 515 aa1.09□□□□□ -2.23
LIMA1-209ENST00000552008 MALSU1Q96EH3 234 aa1.09□□□□□ -2.23
LIMA1-209ENST00000552008 ABHD14BQ96IU4 210 aa1.09□□□□□ -2.23
LIMA1-209ENST00000552008 HYLS1Q96M11 299 aa1.09□□□□□ -2.23
LIMA1-209ENST00000552008 YPEL2Q96QA6 119 aa1.09□□□□□ -2.23
LIMA1-209ENST00000552008 TTTY10Q9BZA0 68 aa1.09□□□□□ -2.23
LIMA1-209ENST00000552008 ALX4Q9H161 411 aaPredicted RBP1.09□□□□□ -2.23
LIMA1-209ENST00000552008 OR2D2Q9H210 308 aa1.09□□□□□ -2.23
LIMA1-209ENST00000552008 OR51I2Q9H344 312 aa1.09□□□□□ -2.23
LIMA1-209ENST00000552008 TAF9BQ9HBM6 251 aa1.09□□□□□ -2.23
LIMA1-209ENST00000552008 HRASLSQ9HDD0 168 aa1.09□□□□□ -2.23
LIMA1-209ENST00000552008 SPANXA1Q9NS26 97 aa1.09□□□□□ -2.23
LIMA1-209ENST00000552008 CTNNBIP1Q9NSA3 81 aaPredicted RBP1.09□□□□□ -2.23
LIMA1-209ENST00000552008 IDI2-AS1Q9NZ38 188 aa1.09□□□□□ -2.23
LIMA1-209ENST00000552008 KAAG1Q9UBP8 84 aa1.09□□□□□ -2.23
LIMA1-209ENST00000552008 JPT1Q9UK76 154 aa1.09□□□□□ -2.23
LIMA1-209ENST00000552008 PRNDQ9UKY0 176 aa1.09□□□□□ -2.23
LIMA1-209ENST00000552008 WASHC3Q9Y3C0 194 aa1.09□□□□□ -2.23
LIMA1-209ENST00000552008 TBL2Q9Y4P3 447 aaKnown RBP1.09□□□□□ -2.23
Retrieved 100 of 20,778 RNA–protein pairs in 49.2 ms