RNA–Protein interactions for RNA: ENST00000549064.1

LIMA1-204, Transcript of LIM domain and actin binding 1, humanhuman

TSL 2

Gene LIMA1, Length 648 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-204ENST00000549064 COQ8AQ8NI60 647 aa4.35□□□□□ -1.71
LIMA1-204ENST00000549064 GPR146Q96CH1 333 aa4.35□□□□□ -1.71
LIMA1-204ENST00000549064 C9orf16Q9BUW7 83 aa4.35□□□□□ -1.71
LIMA1-204ENST00000549064 FKBP11Q9NYL4 201 aa4.35□□□□□ -1.71
LIMA1-204ENST00000549064 LSM2Q9Y333 95 aaKnown RBP4.35□□□□□ -1.71
LIMA1-204ENST00000549064 TRAV12-2A0A075B6T6 113 aa4.34□□□□□ -1.71
LIMA1-204ENST00000549064 A0A096LPF7 62 aa4.34□□□□□ -1.71
LIMA1-204ENST00000549064 K7EQD1 137 aa4.34□□□□□ -1.71
LIMA1-204ENST00000549064 SOCS3O14543 225 aa4.34□□□□□ -1.71
LIMA1-204ENST00000549064 PGLYRP1O75594 196 aaPredicted RBP4.34□□□□□ -1.71
LIMA1-204ENST00000549064 ARL6IP5O75915 188 aa4.34□□□□□ -1.71
LIMA1-204ENST00000549064 NXPH4O95158 308 aa4.34□□□□□ -1.71
LIMA1-204ENST00000549064 IL4P05112 153 aa4.34□□□□□ -1.71
LIMA1-204ENST00000549064 RNASE2P10153 161 aaKnown RBP4.34□□□□□ -1.71
LIMA1-204ENST00000549064 PRB4P10163 310 aaPredicted RBP4.34□□□□□ -1.71
LIMA1-204ENST00000549064 ANXA3P12429 323 aa4.34□□□□□ -1.71
LIMA1-204ENST00000549064 HTN1P15515 57 aa4.34□□□□□ -1.71
LIMA1-204ENST00000549064 TSPOP30536 169 aa4.34□□□□□ -1.71
LIMA1-204ENST00000549064 OPRK1P41145 380 aa4.34□□□□□ -1.71
LIMA1-204ENST00000549064 PSMB3P49720 205 aa4.34□□□□□ -1.71
LIMA1-204ENST00000549064 PPT1P50897 306 aa4.34□□□□□ -1.71
LIMA1-204ENST00000549064 HSPE1P61604 102 aaKnown RBP4.34□□□□□ -1.71
LIMA1-204ENST00000549064 LCE5AQ5TCM9 118 aa4.34□□□□□ -1.71
LIMA1-204ENST00000549064 EBLN2Q6P2I7 272 aa4.34□□□□□ -1.71
LIMA1-204ENST00000549064 BEST4Q8NFU0 473 aa4.34□□□□□ -1.71
LIMA1-204ENST00000549064 PCNPQ8WW12 178 aaKnown RBP4.34□□□□□ -1.71
LIMA1-204ENST00000549064 CYGBQ8WWM9 190 aa4.34□□□□□ -1.71
LIMA1-204ENST00000549064 TSC22D3Q99576 134 aa4.34□□□□□ -1.71
LIMA1-204ENST00000549064 MND1Q9BWT6 205 aa4.34□□□□□ -1.71
LIMA1-204ENST00000549064 NOP10Q9NPE3 64 aaKnown RBP4.34□□□□□ -1.71
LIMA1-204ENST00000549064 PLCXD1Q9NUJ7 323 aa4.34□□□□□ -1.71
LIMA1-204ENST00000549064 XKRY2A2RUG3 117 aa4.33□□□□□ -1.72
LIMA1-204ENST00000549064 FAM74A7A6NL05 159 aa4.33□□□□□ -1.72
LIMA1-204ENST00000549064 IFITM5A6NNB3 132 aa4.33□□□□□ -1.72
LIMA1-204ENST00000549064 A8MTW9 85 aa4.33□□□□□ -1.72
LIMA1-204ENST00000549064 INSP01308 110 aa4.33□□□□□ -1.72
LIMA1-204ENST00000549064 IGKV1-39P01597 117 aa4.33□□□□□ -1.72
LIMA1-204ENST00000549064 IGLV2-11P01706 119 aa4.33□□□□□ -1.72
LIMA1-204ENST00000549064 IGKV1D-39P04432 117 aa4.33□□□□□ -1.72
LIMA1-204ENST00000549064 IGLC1P0CG04 106 aa4.33□□□□□ -1.72
LIMA1-204ENST00000549064 UCP1P25874 307 aa4.33□□□□□ -1.72
LIMA1-204ENST00000549064 SNCAP37840 140 aa4.33□□□□□ -1.72
LIMA1-204ENST00000549064 RND2P52198 227 aa4.33□□□□□ -1.72
LIMA1-204ENST00000549064 RPL36AP83881 106 aaKnown RBP4.33□□□□□ -1.72
LIMA1-204ENST00000549064 FABP5Q01469 135 aa4.33□□□□□ -1.72
LIMA1-204ENST00000549064 ARL6IP1Q15041 203 aa4.33□□□□□ -1.72
LIMA1-204ENST00000549064 FAM74A3Q4VXF1 159 aa4.33□□□□□ -1.72
LIMA1-204ENST00000549064 ADAMTSL4-AS1Q5T5F5 129 aa4.33□□□□□ -1.72
LIMA1-204ENST00000549064 ATRAIDQ6UW56 229 aa4.33□□□□□ -1.72
LIMA1-204ENST00000549064 H2BFWTQ7Z2G1 175 aa4.33□□□□□ -1.72
LIMA1-204ENST00000549064 OR11H7Q8NGC8 314 aa4.33□□□□□ -1.72
LIMA1-204ENST00000549064 OR10G7Q8NGN6 311 aa4.33□□□□□ -1.72
LIMA1-204ENST00000549064 Q8WTZ3 238 aa4.33□□□□□ -1.72
LIMA1-204ENST00000549064 UFD1Q92890 307 aa4.33□□□□□ -1.72
LIMA1-204ENST00000549064 VSIG2Q96IQ7 327 aa4.33□□□□□ -1.72
LIMA1-204ENST00000549064 SEC22AQ96IW7 307 aa4.33□□□□□ -1.72
LIMA1-204ENST00000549064 FKBP14Q9NWM8 211 aa4.33□□□□□ -1.72
LIMA1-204ENST00000549064 DOK5Q9P104 306 aa4.33□□□□□ -1.72
LIMA1-204ENST00000549064 TIMM8BQ9Y5J9 83 aaPredicted RBP4.33□□□□□ -1.72
LIMA1-204ENST00000549064 IGKV2D-30A0A075B6S6 120 aa4.32□□□□□ -1.72
LIMA1-204ENST00000549064 TRAV30A0A087WSZ9 112 aa4.32□□□□□ -1.72
LIMA1-204ENST00000549064 LRCOL1A6NCL2 159 aa4.32□□□□□ -1.72
LIMA1-204ENST00000549064 ERICH4A6NGS2 130 aa4.32□□□□□ -1.72
LIMA1-204ENST00000549064 CORTO00230 105 aa4.32□□□□□ -1.72
LIMA1-204ENST00000549064 CIB2O75838 187 aa4.32□□□□□ -1.72
LIMA1-204ENST00000549064 GNAO1P09471 354 aa4.32□□□□□ -1.72
LIMA1-204ENST00000549064 HSMCR30P0CW71 290 aa4.32□□□□□ -1.72
LIMA1-204ENST00000549064 MT1HL1P0DM35 61 aa4.32□□□□□ -1.72
LIMA1-204ENST00000549064 OR10J1P30954 320 aa4.32□□□□□ -1.72
LIMA1-204ENST00000549064 HNRNPA3P51991 378 aaKnown RBP4.32□□□□□ -1.72
LIMA1-204ENST00000549064 YPEL3P61236 119 aaPredicted RBP4.32□□□□□ -1.72
LIMA1-204ENST00000549064 SPATA31B1PQ5VZV4 182 aa4.32□□□□□ -1.72
LIMA1-204ENST00000549064 PRSS54Q6PEW0 395 aa4.32□□□□□ -1.72
LIMA1-204ENST00000549064 KCNIP4Q6PIL6 250 aa4.32□□□□□ -1.72
LIMA1-204ENST00000549064 Q6ZSA8 131 aa4.32□□□□□ -1.72
LIMA1-204ENST00000549064 TMED4Q7Z7H5 227 aa4.32□□□□□ -1.72
LIMA1-204ENST00000549064 LINC00612Q8N6U2 182 aa4.32□□□□□ -1.72
LIMA1-204ENST00000549064 SLC35G3Q8N808 338 aa4.32□□□□□ -1.72
LIMA1-204ENST00000549064 OR51G1Q8NGK1 321 aa4.32□□□□□ -1.72
LIMA1-204ENST00000549064 OR1S2Q8NGQ3 325 aa4.32□□□□□ -1.72
LIMA1-204ENST00000549064 OR10J6PQ8NGY7 276 aa4.32□□□□□ -1.72
LIMA1-204ENST00000549064 MRGPRFQ96AM1 343 aa4.32□□□□□ -1.72
LIMA1-204ENST00000549064 C16orf74Q96GX8 76 aa4.32□□□□□ -1.72
LIMA1-204ENST00000549064 LINC01587Q99440 93 aa4.32□□□□□ -1.72
LIMA1-204ENST00000549064 SLC25A39Q9BZJ4 359 aaPredicted RBP4.32□□□□□ -1.72
LIMA1-204ENST00000549064 SDF2L1Q9HCN8 221 aa4.32□□□□□ -1.72
LIMA1-204ENST00000549064 MEIS3P1A6NDR6 274 aa4.31□□□□□ -1.72
LIMA1-204ENST00000549064 H3BNG1 76 aa4.31□□□□□ -1.72
LIMA1-204ENST00000549064 CASQ2O14958 399 aaPredicted RBP4.31□□□□□ -1.72
LIMA1-204ENST00000549064 GSTZ1O43708 216 aaPredicted RBP4.31□□□□□ -1.72
LIMA1-204ENST00000549064 ETV6P41212 452 aa4.31□□□□□ -1.72
LIMA1-204ENST00000549064 RANBP1P43487 201 aa4.31□□□□□ -1.72
LIMA1-204ENST00000549064 SCXQ7RTU7 201 aa4.31□□□□□ -1.72
LIMA1-204ENST00000549064 PRSS48Q7RTY5 328 aa4.31□□□□□ -1.72
LIMA1-204ENST00000549064 PBDC1Q9BVG4 233 aa4.31□□□□□ -1.72
LIMA1-204ENST00000549064 CCDC90BQ9GZT6 254 aa4.31□□□□□ -1.72
LIMA1-204ENST00000549064 FXYD6Q9H0Q3 95 aa4.31□□□□□ -1.72
LIMA1-204ENST00000549064 RPRMQ9NS64 109 aa4.31□□□□□ -1.72
LIMA1-204ENST00000549064 IGHV3-38A0A0C4DH36 116 aa4.3□□□□□ -1.72
LIMA1-204ENST00000549064 INS-IGF2F8WCM5 200 aa4.3□□□□□ -1.72
Retrieved 100 of 20,778 RNA–protein pairs in 31.1 ms