RNA–Protein interactions for RNA: ENST00000546820.5

PTCH1-213, Transcript of patched 1, humanhuman

TSL 1 (best)

Gene PTCH1, Length 864 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-213ENST00000546820 RAB2AP61019 212 aa10.21□□□□□ -0.77
PTCH1-213ENST00000546820 TMEM41BQ5BJD5 291 aa10.21□□□□□ -0.77
PTCH1-213ENST00000546820 AKR1C8PQ5T2L2 129 aa10.21□□□□□ -0.77
PTCH1-213ENST00000546820 SPATA31B1PQ5VZV4 182 aa10.21□□□□□ -0.77
PTCH1-213ENST00000546820 FAM122CQ6P4D5 195 aa10.21□□□□□ -0.77
PTCH1-213ENST00000546820 SLC25A2Q9BXI2 301 aa10.21□□□□□ -0.77
PTCH1-213ENST00000546820 ACTR3CQ9C0K3 210 aaPredicted RBP10.21□□□□□ -0.77
PTCH1-213ENST00000546820 RBMY1BA6NDE4 496 aaKnown RBP10.2□□□□□ -0.78
PTCH1-213ENST00000546820 RBMY1EA6NEQ0 496 aaKnown RBP10.2□□□□□ -0.78
PTCH1-213ENST00000546820 H3BQ15 152 aa10.2□□□□□ -0.78
PTCH1-213ENST00000546820 OR7C2O60412 319 aa10.2□□□□□ -0.78
PTCH1-213ENST00000546820 ZNF253O75346 499 aa10.2□□□□□ -0.78
PTCH1-213ENST00000546820 NBEAP1P0C6P0 100 aa10.2□□□□□ -0.78
PTCH1-213ENST00000546820 RBMY1DP0C7P1 496 aaKnown RBP10.2□□□□□ -0.78
PTCH1-213ENST00000546820 SEC11BP0C7V7 166 aa10.2□□□□□ -0.78
PTCH1-213ENST00000546820 TPT1P13693 172 aaKnown RBP10.2□□□□□ -0.78
PTCH1-213ENST00000546820 APOC4P55056 127 aa10.2□□□□□ -0.78
PTCH1-213ENST00000546820 PSG9Q00887 426 aa10.2□□□□□ -0.78
PTCH1-213ENST00000546820 EIF5AL1Q6IS14 154 aaKnown RBP10.2□□□□□ -0.78
PTCH1-213ENST00000546820 EBLN2Q6P2I7 272 aa10.2□□□□□ -0.78
PTCH1-213ENST00000546820 LINC00322Q6ZN03 302 aaPredicted RBP10.2□□□□□ -0.78
PTCH1-213ENST00000546820 PQLC2Q6ZP29 291 aa10.2□□□□□ -0.78
PTCH1-213ENST00000546820 BAP18Q8IXM2 172 aa10.2□□□□□ -0.78
PTCH1-213ENST00000546820 RNF141Q8WVD5 230 aa10.2□□□□□ -0.78
PTCH1-213ENST00000546820 FAM167A-AS1Q96KT0 104 aa10.2□□□□□ -0.78
PTCH1-213ENST00000546820 C17orf77Q96MU5 243 aa10.2□□□□□ -0.78
PTCH1-213ENST00000546820 CITED4Q96RK1 184 aa10.2□□□□□ -0.78
PTCH1-213ENST00000546820 ZNF331Q9NQX6 463 aaPredicted RBP10.2□□□□□ -0.78
PTCH1-213ENST00000546820 TRBV19A0A075B6N1 114 aa10.19□□□□□ -0.78
PTCH1-213ENST00000546820 SNRPCP09234 159 aaKnown RBP10.19□□□□□ -0.78
PTCH1-213ENST00000546820 PYYP10082 97 aa10.19□□□□□ -0.78
PTCH1-213ENST00000546820 CDC34P49427 236 aaPredicted RBP10.19□□□□□ -0.78
PTCH1-213ENST00000546820 CD300CQ08708 224 aa10.19□□□□□ -0.78
PTCH1-213ENST00000546820 PDE6HQ13956 83 aa10.19□□□□□ -0.78
PTCH1-213ENST00000546820 ZNF124Q15973 351 aa10.19□□□□□ -0.78
PTCH1-213ENST00000546820 PSG3Q16557 428 aa10.19□□□□□ -0.78
PTCH1-213ENST00000546820 ACTL10Q5JWF8 245 aa10.19□□□□□ -0.78
PTCH1-213ENST00000546820 RPP25LQ8N5L8 163 aaKnown RBP10.19□□□□□ -0.78
PTCH1-213ENST00000546820 SAT2Q96F10 170 aaPredicted RBP10.19□□□□□ -0.78
PTCH1-213ENST00000546820 ZNF586Q9NXT0 402 aa10.19□□□□□ -0.78
PTCH1-213ENST00000546820 KIR2DL5BA0A0G2JN68 375 aa10.18□□□□□ -0.78
PTCH1-213ENST00000546820 KIR2DL5BA0A0G2JPC4 375 aa10.18□□□□□ -0.78
PTCH1-213ENST00000546820 KNCNA6PVL3 124 aa10.18□□□□□ -0.78
PTCH1-213ENST00000546820 UMAD1C9J7I0 102 aa10.18□□□□□ -0.78
PTCH1-213ENST00000546820 UBE2CO00762 179 aa10.18□□□□□ -0.78
PTCH1-213ENST00000546820 RPL35AP18077 110 aaKnown RBP10.18□□□□□ -0.78
PTCH1-213ENST00000546820 NUTF2P61970 127 aaKnown RBP10.18□□□□□ -0.78
PTCH1-213ENST00000546820 HAGHQ16775 308 aa10.18□□□□□ -0.78
PTCH1-213ENST00000546820 FOXI2Q6ZQN5 318 aa10.18□□□□□ -0.78
PTCH1-213ENST00000546820 SLC51BQ86UW2 128 aa10.18□□□□□ -0.78
PTCH1-213ENST00000546820 SBSPONQ8IVN8 264 aa10.18□□□□□ -0.78
PTCH1-213ENST00000546820 KIR2DL5AQ8N109 375 aa10.18□□□□□ -0.78
PTCH1-213ENST00000546820 ZNF738Q8NE65 137 aa10.18□□□□□ -0.78
PTCH1-213ENST00000546820 KIR2DL5BQ8NHK3 375 aa10.18□□□□□ -0.78
PTCH1-213ENST00000546820 BLNKQ8WV28 456 aa10.18□□□□□ -0.78
PTCH1-213ENST00000546820 RAB24Q969Q5 203 aa10.18□□□□□ -0.78
PTCH1-213ENST00000546820 ASCL2Q99929 193 aa10.18□□□□□ -0.78
PTCH1-213ENST00000546820 AAMDCQ9H7C9 122 aa10.18□□□□□ -0.78
PTCH1-213ENST00000546820 ZMAT4Q9H898 229 aa10.18□□□□□ -0.78
PTCH1-213ENST00000546820 TRAV8-2A0A0B4J237 113 aa10.17□□□□□ -0.78
PTCH1-213ENST00000546820 H3BTX0 84 aa10.17□□□□□ -0.78
PTCH1-213ENST00000546820 OR10J4P0C629 311 aa10.17□□□□□ -0.78
PTCH1-213ENST00000546820 UBE2L3P68036 154 aaKnown RBP10.17□□□□□ -0.78
PTCH1-213ENST00000546820 LYPD1Q8N2G4 141 aa10.17□□□□□ -0.78
PTCH1-213ENST00000546820 STOML3Q8TAV4 291 aa10.17□□□□□ -0.78
PTCH1-213ENST00000546820 CSTL1Q9H114 145 aa10.17□□□□□ -0.78
PTCH1-213ENST00000546820 SAV1Q9H4B6 383 aaPredicted RBP10.17□□□□□ -0.78
PTCH1-213ENST00000546820 PRELID1Q9Y255 219 aa10.17□□□□□ -0.78
PTCH1-213ENST00000546820 CTXND1A0A1B0GTU2 59 aa10.16□□□□□ -0.78
PTCH1-213ENST00000546820 H3BMM0 161 aa10.16□□□□□ -0.78
PTCH1-213ENST00000546820 HMGB3O15347 200 aaKnown RBP10.16□□□□□ -0.78
PTCH1-213ENST00000546820 DUSP14O95147 198 aaKnown RBP10.16□□□□□ -0.78
PTCH1-213ENST00000546820 CXorf1O96002 111 aa10.16□□□□□ -0.78
PTCH1-213ENST00000546820 STAG3L2P0CL84 134 aa10.16□□□□□ -0.78
PTCH1-213ENST00000546820 STAG3L3P0CL85 134 aa10.16□□□□□ -0.78
PTCH1-213ENST00000546820 HLA-DRB4P13762 266 aa10.16□□□□□ -0.78
PTCH1-213ENST00000546820 IGFL4Q6B9Z1 124 aa10.16□□□□□ -0.78
PTCH1-213ENST00000546820 MORN3Q6PF18 240 aaPredicted RBP10.16□□□□□ -0.78
PTCH1-213ENST00000546820 C9orf62Q8N4C0 152 aa10.16□□□□□ -0.78
PTCH1-213ENST00000546820 RNF182Q8N6D2 247 aa10.16□□□□□ -0.78
PTCH1-213ENST00000546820 FXYD5Q96DB9 178 aa10.16□□□□□ -0.78
PTCH1-213ENST00000546820 C20orf173Q96LM9 149 aa10.16□□□□□ -0.78
PTCH1-213ENST00000546820 HLA-DRB4X5D2U9 266 aa10.16□□□□□ -0.78
PTCH1-213ENST00000546820 DNAH3Q8TD57 4116 aa10.16□□□□□ -0.78
PTCH1-213ENST00000546820 A0A0J9YX75 114 aa10.15□□□□□ -0.78
PTCH1-213ENST00000546820 SLC17A3O00476 420 aa10.15□□□□□ -0.78
PTCH1-213ENST00000546820 DPPA3Q6W0C5 159 aa10.15□□□□□ -0.78
PTCH1-213ENST00000546820 TRPT1Q86TN4 253 aaKnown RBP10.15□□□□□ -0.78
PTCH1-213ENST00000546820 OR4B1Q8NGF8 309 aa10.15□□□□□ -0.78
PTCH1-213ENST00000546820 RPUSD4Q96CM3 377 aaKnown RBP10.15□□□□□ -0.78
PTCH1-213ENST00000546820 MRPL53Q96EL3 112 aaKnown RBP10.15□□□□□ -0.78
PTCH1-213ENST00000546820 ZNF503Q96F45 646 aa10.15□□□□□ -0.78
PTCH1-213ENST00000546820 CLUHP3Q96NS8 147 aa10.15□□□□□ -0.78
PTCH1-213ENST00000546820 NDUFB4O95168 129 aa10.14□□□□□ -0.79
PTCH1-213ENST00000546820 ARL14EPLP0DKL9 152 aa10.14□□□□□ -0.79
PTCH1-213ENST00000546820 HLA-DMBP28068 263 aa10.14□□□□□ -0.79
PTCH1-213ENST00000546820 RAB5CP51148 216 aa10.14□□□□□ -0.79
PTCH1-213ENST00000546820 RANP62826 216 aaKnown RBP10.14□□□□□ -0.79
PTCH1-213ENST00000546820 FAM74A1Q5RGS3 127 aa10.14□□□□□ -0.79
PTCH1-213ENST00000546820 Q6ZWC4 215 aa10.14□□□□□ -0.79
Retrieved 100 of 20,778 RNA–protein pairs in 34.5 ms