RNA–Protein interactions for RNA: ENST00000546411.6

CUX1-211, Transcript of cut like homeobox 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CUX1, Length 4,212 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-211ENST00000546411 Q1RN00 199 aa12.56□□□□□ -0.4
CUX1-211ENST00000546411 LSM4Q9Y4Z0 139 aaKnown RBP12.56□□□□□ -0.4
CUX1-211ENST00000546411 C22orf46C9J442 243 aa12.56□□□□□ -0.4
CUX1-211ENST00000546411 SAA4P35542 130 aa12.56□□□□□ -0.4
CUX1-211ENST00000546411 V9GYV3 84 aa12.56□□□□□ -0.4
CUX1-211ENST00000546411 OR10J3Q5JRS4 329 aa12.56□□□□□ -0.4
CUX1-211ENST00000546411 MSRB2Q9Y3D2 182 aa12.56□□□□□ -0.4
CUX1-211ENST00000546411 IGKV1OR2-108A0A075B7D4 117 aa12.55□□□□□ -0.4
CUX1-211ENST00000546411 SHISA9B4DS77 424 aa12.55□□□□□ -0.4
CUX1-211ENST00000546411 PRTN3P24158 256 aa12.55□□□□□ -0.4
CUX1-211ENST00000546411 HCFC1P51610 2035 aa12.55□□□□□ -0.4
CUX1-211ENST00000546411 FNDC10F2Z333 226 aa12.55□□□□□ -0.4
CUX1-211ENST00000546411 CEACAM4O75871 244 aa12.55□□□□□ -0.4
CUX1-211ENST00000546411 IGHV2-70P01814 119 aa12.55□□□□□ -0.4
CUX1-211ENST00000546411 SCGB1C2P0DMR2 95 aa12.55□□□□□ -0.4
CUX1-211ENST00000546411 SLAQ13239 276 aa12.55□□□□□ -0.4
CUX1-211ENST00000546411 EBLN2Q6P2I7 272 aa12.55□□□□□ -0.4
CUX1-211ENST00000546411 C12orf54Q6X4T0 127 aa12.55□□□□□ -0.4
CUX1-211ENST00000546411 DYNLRB2Q8TF09 96 aa12.55□□□□□ -0.4
CUX1-211ENST00000546411 G3V318 75 aa12.55□□□□□ -0.4
CUX1-211ENST00000546411 EFNA4P52798 201 aa12.55□□□□□ -0.4
CUX1-211ENST00000546411 LYZL1Q6UWQ5 148 aa12.55□□□□□ -0.4
CUX1-211ENST00000546411 DUX5Q96PT3 197 aa12.55□□□□□ -0.4
CUX1-211ENST00000546411 LY96Q9Y6Y9 160 aa12.55□□□□□ -0.4
CUX1-211ENST00000546411 DGAT2L7PQ6IED9 249 aa12.54□□□□□ -0.4
CUX1-211ENST00000546411 ARMS2P0C7Q2 107 aa12.54□□□□□ -0.4
CUX1-211ENST00000546411 VWC2Q2TAL6 325 aa12.54□□□□□ -0.4
CUX1-211ENST00000546411 C1orf194Q5T5A4 169 aa12.54□□□□□ -0.4
CUX1-211ENST00000546411 SOX21Q9Y651 276 aaPredicted RBP12.54□□□□□ -0.4
CUX1-211ENST00000546411 KIAA1549Q9HCM3 1950 aa12.54□□□□□ -0.4
CUX1-211ENST00000546411 A6NDN8 102 aa12.54□□□□□ -0.4
CUX1-211ENST00000546411 NDUFB8O95169 186 aa12.54□□□□□ -0.4
CUX1-211ENST00000546411 POU2AF1Q16633 256 aa12.54□□□□□ -0.4
CUX1-211ENST00000546411 DDB2Q92466 427 aa12.54□□□□□ -0.4
CUX1-211ENST00000546411 NCOR1P1Q9H4R4 102 aa12.54□□□□□ -0.4
CUX1-211ENST00000546411 NACAE9PAV3 2078 aa12.53□□□□□ -0.4
CUX1-211ENST00000546411 SMKR1H3BMG3 65 aa12.53□□□□□ -0.4
CUX1-211ENST00000546411 HAX1O00165 279 aa12.53□□□□□ -0.4
CUX1-211ENST00000546411 FRMD6-AS1P0C7T7 363 aa12.53□□□□□ -0.4
CUX1-211ENST00000546411 C1orf229Q6ZS94 237 aaPredicted RBP12.53□□□□□ -0.4
CUX1-211ENST00000546411 KLF2Q9Y5W3 355 aaPredicted RBP12.53□□□□□ -0.4
CUX1-211ENST00000546411 hDV102S1A0JD36 115 aa12.53□□□□□ -0.4
CUX1-211ENST00000546411 D6R8Y8 96 aa12.53□□□□□ -0.4
CUX1-211ENST00000546411 EREGO14944 169 aa12.53□□□□□ -0.4
CUX1-211ENST00000546411 C17orf77Q96MU5 243 aa12.53□□□□□ -0.4
CUX1-211ENST00000546411 KMT2EQ8IZD2 1858 aa12.53□□□□□ -0.4
CUX1-211ENST00000546411 RNASE4P34096 147 aaKnown RBP12.53□□□□□ -0.4
CUX1-211ENST00000546411 C3orf36Q3SXR2 165 aa12.53□□□□□ -0.4
CUX1-211ENST00000546411 RUSC1-AS1Q66K80 236 aa12.53□□□□□ -0.4
CUX1-211ENST00000546411 FAM159AQ6UWV7 190 aa12.53□□□□□ -0.4
CUX1-211ENST00000546411 POLR3KQ9Y2Y1 108 aaPredicted RBP12.53□□□□□ -0.4
CUX1-211ENST00000546411 H3BUX3 64 aa12.52□□□□□ -0.41
CUX1-211ENST00000546411 GTF2H5Q6ZYL4 71 aa12.52□□□□□ -0.41
CUX1-211ENST00000546411 MAPK1IP1LQ8NDC0 245 aa12.52□□□□□ -0.41
CUX1-211ENST00000546411 TRAV9-2A0A087WT02 112 aa12.52□□□□□ -0.41
CUX1-211ENST00000546411 NUPR1O60356 82 aa12.52□□□□□ -0.41
CUX1-211ENST00000546411 TYMSP04818 313 aa12.52□□□□□ -0.41
CUX1-211ENST00000546411 CACNG7P62955 275 aa12.52□□□□□ -0.41
CUX1-211ENST00000546411 Q6ZWC4 215 aa12.52□□□□□ -0.41
CUX1-211ENST00000546411 FOXC2Q99958 501 aa12.52□□□□□ -0.41
CUX1-211ENST00000546411 IGLC7A0M8Q6 106 aa12.51□□□□□ -0.41
CUX1-211ENST00000546411 AMN1Q8IY45 258 aa12.51□□□□□ -0.41
CUX1-211ENST00000546411 FAM181BA6NEQ2 426 aa12.51□□□□□ -0.41
CUX1-211ENST00000546411 Q86TA4 180 aa12.51□□□□□ -0.41
CUX1-211ENST00000546411 C18orf32Q8TCD1 76 aa12.51□□□□□ -0.41
CUX1-211ENST00000546411 MRPL36Q9P0J6 103 aaKnown RBP12.51□□□□□ -0.41
CUX1-211ENST00000546411 LRRK2Q5S007 2527 aa12.51□□□□□ -0.41
CUX1-211ENST00000546411 TNRC6AQ8NDV7 1962 aaKnown RBP12.51□□□□□ -0.41
CUX1-211ENST00000546411 A8MWP6 167 aa12.51□□□□□ -0.41
CUX1-211ENST00000546411 SMAD7O15105 426 aaKnown RBP12.51□□□□□ -0.41
CUX1-211ENST00000546411 PAX8Q06710 450 aa12.51□□□□□ -0.41
CUX1-211ENST00000546411 ERCC8Q13216 396 aa12.51□□□□□ -0.41
CUX1-211ENST00000546411 C11orf44Q8N8P7 122 aa12.51□□□□□ -0.41
CUX1-211ENST00000546411 BEND2Q8NDZ0 799 aa12.51□□□□□ -0.41
CUX1-211ENST00000546411 RCHY1Q96PM5 261 aa12.51□□□□□ -0.41
CUX1-211ENST00000546411 TOMM40O96008 361 aa12.51□□□□□ -0.41
CUX1-211ENST00000546411 ZNF562Q6V9R5 426 aa12.51□□□□□ -0.41
CUX1-211ENST00000546411 RNF182Q8N6D2 247 aa12.51□□□□□ -0.41
CUX1-211ENST00000546411 FXYD5Q96DB9 178 aa12.51□□□□□ -0.41
CUX1-211ENST00000546411 NCKAP5O14513 1909 aa12.5□□□□□ -0.41
CUX1-211ENST00000546411 TRAV41A0A0B4J266 112 aa12.5□□□□□ -0.41
CUX1-211ENST00000546411 GAGE10A6NGK3 116 aa12.5□□□□□ -0.41
CUX1-211ENST00000546411 Q6AWC8 147 aa12.5□□□□□ -0.41
CUX1-211ENST00000546411 SHANK2-AS3Q9BTD1 123 aa12.5□□□□□ -0.41
CUX1-211ENST00000546411 CELSR3Q9NYQ7 3312 aa12.5□□□□□ -0.41
CUX1-211ENST00000546411 H3BVH4 76 aa12.5□□□□□ -0.41
CUX1-211ENST00000546411 IGLC1P0CG04 106 aa12.5□□□□□ -0.41
CUX1-211ENST00000546411 RNF5Q99942 180 aa12.5□□□□□ -0.41
CUX1-211ENST00000546411 LEPP41159 167 aa12.5□□□□□ -0.41
CUX1-211ENST00000546411 ATP5L2Q7Z4Y8 100 aa12.5□□□□□ -0.41
CUX1-211ENST00000546411 ZNF56Q15929 161 aa12.49□□□□□ -0.41
CUX1-211ENST00000546411 PSG3Q16557 428 aa12.49□□□□□ -0.41
CUX1-211ENST00000546411 LINC00311Q8N616 119 aa12.49□□□□□ -0.41
CUX1-211ENST00000546411 TMEM213A2RRL7 107 aa12.49□□□□□ -0.41
CUX1-211ENST00000546411 M0R1W7 72 aa12.49□□□□□ -0.41
CUX1-211ENST00000546411 ATP6V0E1O15342 81 aa12.49□□□□□ -0.41
CUX1-211ENST00000546411 SH2D1AO60880 128 aa12.49□□□□□ -0.41
CUX1-211ENST00000546411 C11orf52Q96A22 123 aa12.49□□□□□ -0.41
CUX1-211ENST00000546411 SPEGQ15772 3267 aa12.49□□□□□ -0.41
CUX1-211ENST00000546411 NPFFO15130 113 aa12.49□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 45.6 ms