RNA–Protein interactions for RNA: ENST00000544349.5

VPS33A-209, Transcript of VPS33A, CORVET/HOPS core subunit, humanhuman

TSL 2

Gene VPS33A, Length 2,114 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS33A-209ENST00000544349 GDF5OSQ5U4N7 250 aa11.16□□□□□ -0.62
VPS33A-209ENST00000544349 FAM231DQ6ZW35 169 aa11.16□□□□□ -0.62
VPS33A-209ENST00000544349 EPDR1Q9UM22 224 aa11.16□□□□□ -0.62
VPS33A-209ENST00000544349 PGPA6NDG6 321 aa11.15□□□□□ -0.62
VPS33A-209ENST00000544349 MT-ND6P03923 174 aa11.15□□□□□ -0.62
VPS33A-209ENST00000544349 NBEAP1P0C6P0 100 aa11.15□□□□□ -0.62
VPS33A-209ENST00000544349 TPPP2P59282 170 aa11.15□□□□□ -0.62
VPS33A-209ENST00000544349 SLAQ13239 276 aa11.15□□□□□ -0.62
VPS33A-209ENST00000544349 C19orf54Q5BKX5 351 aa11.15□□□□□ -0.62
VPS33A-209ENST00000544349 WDR73Q6P4I2 378 aa11.15□□□□□ -0.62
VPS33A-209ENST00000544349 NOL4LQ96MY1 436 aaPredicted RBP11.15□□□□□ -0.62
VPS33A-209ENST00000544349 CSPG4Q6UVK1 2322 aa11.15□□□□□ -0.62
VPS33A-209ENST00000544349 IGHG2P01859 326 aa11.15□□□□□ -0.62
VPS33A-209ENST00000544349 SRIP30626 198 aa11.15□□□□□ -0.62
VPS33A-209ENST00000544349 Q56UQ5 140 aa11.15□□□□□ -0.62
VPS33A-209ENST00000544349 LINC00322Q6ZN03 302 aaPredicted RBP11.15□□□□□ -0.62
VPS33A-209ENST00000544349 C9orf139Q6ZV77 190 aa11.15□□□□□ -0.62
VPS33A-209ENST00000544349 CIARTQ8N365 385 aaPredicted RBP11.15□□□□□ -0.62
VPS33A-209ENST00000544349 VN1R17PQ8TDU5 208 aa11.15□□□□□ -0.62
VPS33A-209ENST00000544349 CELSR1Q9NYQ6 3014 aa11.15□□□□□ -0.63
VPS33A-209ENST00000544349 TRAV41A0A0B4J266 112 aa11.14□□□□□ -0.63
VPS33A-209ENST00000544349 TOMM40O96008 361 aa11.14□□□□□ -0.63
VPS33A-209ENST00000544349 FCGR2BP31994 310 aaPredicted RBP11.14□□□□□ -0.63
VPS33A-209ENST00000544349 UBE2G1P62253 170 aa11.14□□□□□ -0.63
VPS33A-209ENST00000544349 ZNF600Q6ZNG1 722 aa11.14□□□□□ -0.63
VPS33A-209ENST00000544349 NUP35Q8NFH5 326 aa11.14□□□□□ -0.63
VPS33A-209ENST00000544349 STXBP6Q8NFX7 210 aa11.14□□□□□ -0.63
VPS33A-209ENST00000544349 TXN2Q99757 166 aa11.14□□□□□ -0.63
VPS33A-209ENST00000544349 Q9H3A6 140 aa11.14□□□□□ -0.63
VPS33A-209ENST00000544349 HIGD1AQ9Y241 93 aa11.14□□□□□ -0.63
VPS33A-209ENST00000544349 ZFHX3Q15911 3703 aa11.14□□□□□ -0.63
VPS33A-209ENST00000544349 IGHV3-23P01764 117 aa11.14□□□□□ -0.63
VPS33A-209ENST00000544349 IGHV4-59P01825 116 aa11.14□□□□□ -0.63
VPS33A-209ENST00000544349 IGF1P05019 195 aa11.14□□□□□ -0.63
VPS33A-209ENST00000544349 PRB4P10163 310 aaPredicted RBP11.14□□□□□ -0.63
VPS33A-209ENST00000544349 BLCAPP62952 87 aa11.14□□□□□ -0.63
VPS33A-209ENST00000544349 RHOGP84095 191 aa11.14□□□□□ -0.63
VPS33A-209ENST00000544349 GRAMD2BQ96HH9 432 aa11.14□□□□□ -0.63
VPS33A-209ENST00000544349 NDUFAF3Q9BU61 184 aa11.14□□□□□ -0.63
VPS33A-209ENST00000544349 MAP1AP78559 2803 aaPredicted RBP11.13□□□□□ -0.63
VPS33A-209ENST00000544349 KIR2DL5BA0A0G2JN68 375 aa11.13□□□□□ -0.63
VPS33A-209ENST00000544349 KIR2DL5BA0A0G2JPC4 375 aa11.13□□□□□ -0.63
VPS33A-209ENST00000544349 A0A1B0GV90 55 aa11.13□□□□□ -0.63
VPS33A-209ENST00000544349 HLA-DQA1P01909 254 aa11.13□□□□□ -0.63
VPS33A-209ENST00000544349 PAFAH1B2P68402 229 aa11.13□□□□□ -0.63
VPS33A-209ENST00000544349 USF2Q15853 346 aaPredicted RBP11.13□□□□□ -0.63
VPS33A-209ENST00000544349 C15orf32Q32M92 178 aa11.13□□□□□ -0.63
VPS33A-209ENST00000544349 TOMM20LQ6UXN7 152 aa11.13□□□□□ -0.63
VPS33A-209ENST00000544349 KIR2DL5AQ8N109 375 aa11.13□□□□□ -0.63
VPS33A-209ENST00000544349 NEU1Q99519 415 aa11.13□□□□□ -0.63
VPS33A-209ENST00000544349 FOXC2Q99958 501 aa11.13□□□□□ -0.63
VPS33A-209ENST00000544349 SLC25A39Q9BZJ4 359 aaPredicted RBP11.13□□□□□ -0.63
VPS33A-209ENST00000544349 ZNF586Q9NXT0 402 aa11.13□□□□□ -0.63
VPS33A-209ENST00000544349 MRPL27Q9P0M9 148 aaKnown RBP11.13□□□□□ -0.63
VPS33A-209ENST00000544349 LINC00527Q9UJ94 153 aa11.13□□□□□ -0.63
VPS33A-209ENST00000544349 KLF12Q9Y4X4 402 aa11.13□□□□□ -0.63
VPS33A-209ENST00000544349 ZNF705FA8MVS1 300 aaPredicted RBP11.12□□□□□ -0.63
VPS33A-209ENST00000544349 EREGO14944 169 aa11.12□□□□□ -0.63
VPS33A-209ENST00000544349 TCRAP04437 139 aa11.12□□□□□ -0.63
VPS33A-209ENST00000544349 ZNF705DP0CH99 300 aaPredicted RBP11.12□□□□□ -0.63
VPS33A-209ENST00000544349 ZNF705BP0CI00 300 aaPredicted RBP11.12□□□□□ -0.63
VPS33A-209ENST00000544349 TDRG1Q3Y452 100 aa11.12□□□□□ -0.63
VPS33A-209ENST00000544349 ZNF491Q8N8L2 437 aa11.12□□□□□ -0.63
VPS33A-209ENST00000544349 C5orf17Q8NAS9 161 aa11.12□□□□□ -0.63
VPS33A-209ENST00000544349 ATG101Q9BSB4 218 aa11.12□□□□□ -0.63
VPS33A-209ENST00000544349 SAMD10Q9BYL1 202 aa11.12□□□□□ -0.63
VPS33A-209ENST00000544349 TRAV8-1A0A0A6YYK1 113 aa11.12□□□□□ -0.63
VPS33A-209ENST00000544349 SMAD7O15105 426 aaKnown RBP11.12□□□□□ -0.63
VPS33A-209ENST00000544349 Q6ZS46 218 aa11.12□□□□□ -0.63
VPS33A-209ENST00000544349 LINC00469Q8N7U9 141 aa11.12□□□□□ -0.63
VPS33A-209ENST00000544349 ZNF502Q8TBZ5 544 aa11.12□□□□□ -0.63
VPS33A-209ENST00000544349 KCNS1Q96KK3 526 aa11.12□□□□□ -0.63
VPS33A-209ENST00000544349 MLST8Q9BVC4 326 aa11.12□□□□□ -0.63
VPS33A-209ENST00000544349 WI2-2373I1.2A0A1W2PRP0 233 aa11.11□□□□□ -0.63
VPS33A-209ENST00000544349 OR2T8A6NH00 312 aa11.11□□□□□ -0.63
VPS33A-209ENST00000544349 HIGD1CA8MV81 97 aa11.11□□□□□ -0.63
VPS33A-209ENST00000544349 LTAP01374 205 aa11.11□□□□□ -0.63
VPS33A-209ENST00000544349 APCSP02743 223 aa11.11□□□□□ -0.63
VPS33A-209ENST00000544349 CTSGP08311 255 aa11.11□□□□□ -0.63
VPS33A-209ENST00000544349 PMCHP20382 165 aa11.11□□□□□ -0.63
VPS33A-209ENST00000544349 OR10J3Q5JRS4 329 aa11.11□□□□□ -0.63
VPS33A-209ENST00000544349 Q6YL49 198 aa11.11□□□□□ -0.63
VPS33A-209ENST00000544349 EXOC3-AS1Q8N2X6 119 aa11.11□□□□□ -0.63
VPS33A-209ENST00000544349 RNF125Q96EQ8 232 aa11.11□□□□□ -0.63
VPS33A-209ENST00000544349 SSBP4Q9BWG4 385 aaPredicted RBP11.11□□□□□ -0.63
VPS33A-209ENST00000544349 SCGB2A1O75556 95 aa11.11□□□□□ -0.63
VPS33A-209ENST00000544349 IL4P05112 153 aa11.11□□□□□ -0.63
VPS33A-209ENST00000544349 RPL19P84098 196 aaKnown RBP11.11□□□□□ -0.63
VPS33A-209ENST00000544349 COX19Q49B96 90 aa11.11□□□□□ -0.63
VPS33A-209ENST00000544349 C1orf194Q5T5A4 169 aa11.11□□□□□ -0.63
VPS33A-209ENST00000544349 TCF24Q7RTU0 167 aa11.11□□□□□ -0.63
VPS33A-209ENST00000544349 WIPF2Q8TF74 440 aaPredicted RBP11.11□□□□□ -0.63
VPS33A-209ENST00000544349 TSKUQ8WUA8 353 aa11.11□□□□□ -0.63
VPS33A-209ENST00000544349 GPR82Q96P67 336 aa11.11□□□□□ -0.63
VPS33A-209ENST00000544349 ZNF331Q9NQX6 463 aaPredicted RBP11.11□□□□□ -0.63
VPS33A-209ENST00000544349 ZMAT5Q9UDW3 170 aaKnown RBP11.11□□□□□ -0.63
VPS33A-209ENST00000544349 A0A1W2PS18 150 aa11.1□□□□□ -0.63
VPS33A-209ENST00000544349 ZNF253O75346 499 aa11.1□□□□□ -0.63
VPS33A-209ENST00000544349 GPX1P07203 203 aa11.1□□□□□ -0.63
VPS33A-209ENST00000544349 PPIFP30405 207 aaKnown RBP11.1□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 47.4 ms