RNA–Protein interactions for RNA: ENST00000542845.3

LIMS1-214, Transcript of LIM zinc finger domain containing 1, humanhuman

TSL 5

Gene LIMS1, Length 727 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-214ENST00000542845 SOCS3O14543 225 aa3.15□□□□□ -1.91
LIMS1-214ENST00000542845 PDCD5O14737 125 aa3.15□□□□□ -1.91
LIMS1-214ENST00000542845 CIB2O75838 187 aa3.15□□□□□ -1.91
LIMS1-214ENST00000542845 TOMM40O96008 361 aa3.15□□□□□ -1.91
LIMS1-214ENST00000542845 HSPA13P48723 471 aa3.15□□□□□ -1.91
LIMS1-214ENST00000542845 LYZP61626 148 aa3.15□□□□□ -1.91
LIMS1-214ENST00000542845 WFDC2Q14508 124 aa3.15□□□□□ -1.91
LIMS1-214ENST00000542845 ACOT6Q3I5F7 207 aaPredicted RBP3.15□□□□□ -1.91
LIMS1-214ENST00000542845 C10orf25Q5T742 122 aa3.15□□□□□ -1.91
LIMS1-214ENST00000542845 PRR27Q6MZM9 219 aa3.15□□□□□ -1.91
LIMS1-214ENST00000542845 PRSS54Q6PEW0 395 aa3.15□□□□□ -1.91
LIMS1-214ENST00000542845 NEGR1Q7Z3B1 354 aa3.15□□□□□ -1.91
LIMS1-214ENST00000542845 NRARPQ7Z6K4 114 aa3.15□□□□□ -1.91
LIMS1-214ENST00000542845 TMEM256Q8N2U0 113 aa3.15□□□□□ -1.91
LIMS1-214ENST00000542845 ZNF738Q8NE65 137 aa3.15□□□□□ -1.91
LIMS1-214ENST00000542845 RNASE8Q8TDE3 154 aaKnown RBP3.15□□□□□ -1.91
LIMS1-214ENST00000542845 UFD1Q92890 307 aa3.15□□□□□ -1.91
LIMS1-214ENST00000542845 BORCS5Q969J3 196 aa3.15□□□□□ -1.91
LIMS1-214ENST00000542845 SEC22AQ96IW7 307 aa3.15□□□□□ -1.91
LIMS1-214ENST00000542845 ZNF2Q9BSG1 426 aaPredicted RBP3.15□□□□□ -1.91
LIMS1-214ENST00000542845 SPXQ9BT56 116 aa3.15□□□□□ -1.91
LIMS1-214ENST00000542845 MND1Q9BWT6 205 aa3.15□□□□□ -1.91
LIMS1-214ENST00000542845 SLC25A22Q9H936 323 aa3.15□□□□□ -1.91
LIMS1-214ENST00000542845 MED4Q9NPJ6 270 aa3.15□□□□□ -1.91
LIMS1-214ENST00000542845 EHFQ9NZC4 300 aa3.15□□□□□ -1.91
LIMS1-214ENST00000542845 TNXBP22105 4242 aa3.15□□□□□ -1.91
LIMS1-214ENST00000542845 TRAV18A0A075B6X5 111 aa3.14□□□□□ -1.91
LIMS1-214ENST00000542845 TRGV1A0A0A0MS02 117 aa3.14□□□□□ -1.91
LIMS1-214ENST00000542845 TRAV5A0A0B4J249 113 aa3.14□□□□□ -1.91
LIMS1-214ENST00000542845 IFITM5A6NNB3 132 aa3.14□□□□□ -1.91
LIMS1-214ENST00000542845 GPR31O00270 319 aa3.14□□□□□ -1.91
LIMS1-214ENST00000542845 IGKV1-39P01597 117 aa3.14□□□□□ -1.91
LIMS1-214ENST00000542845 PMP2P02689 132 aa3.14□□□□□ -1.91
LIMS1-214ENST00000542845 IGKV1D-39P04432 117 aa3.14□□□□□ -1.91
LIMS1-214ENST00000542845 OR5AC1P0C628 307 aa3.14□□□□□ -1.91
LIMS1-214ENST00000542845 RAB3BP20337 219 aa3.14□□□□□ -1.91
LIMS1-214ENST00000542845 NUP62P37198 522 aaPredicted RBP3.14□□□□□ -1.91
LIMS1-214ENST00000542845 RPL5P46777 297 aaKnown RBP3.14□□□□□ -1.91
LIMS1-214ENST00000542845 RFX2P48378 723 aa3.14□□□□□ -1.91
LIMS1-214ENST00000542845 AMTP48728 403 aa3.14□□□□□ -1.91
LIMS1-214ENST00000542845 SUPT4H1P63272 117 aaKnown RBP3.14□□□□□ -1.91
LIMS1-214ENST00000542845 FABP5Q01469 135 aa3.14□□□□□ -1.91
LIMS1-214ENST00000542845 OR2F1Q13607 317 aa3.14□□□□□ -1.91
LIMS1-214ENST00000542845 SPHARQ15513 63 aa3.14□□□□□ -1.91
LIMS1-214ENST00000542845 MRPL23Q16540 153 aaKnown RBP3.14□□□□□ -1.91
LIMS1-214ENST00000542845 PSG3Q16557 428 aa3.14□□□□□ -1.91
LIMS1-214ENST00000542845 HOGA1Q86XE5 327 aa3.14□□□□□ -1.91
LIMS1-214ENST00000542845 C10orf126Q8N4M7 172 aa3.14□□□□□ -1.91
LIMS1-214ENST00000542845 ARRDC1Q8N5I2 433 aa3.14□□□□□ -1.91
LIMS1-214ENST00000542845 LRTM2Q8N967 370 aa3.14□□□□□ -1.91
LIMS1-214ENST00000542845 OR5AP2Q8NGF4 316 aa3.14□□□□□ -1.91
LIMS1-214ENST00000542845 OR52E5Q8NH55 327 aa3.14□□□□□ -1.91
LIMS1-214ENST00000542845 PARD6GQ9BYG4 376 aaPredicted RBP3.14□□□□□ -1.91
LIMS1-214ENST00000542845 PSORS1C1Q9UIG5 152 aa3.14□□□□□ -1.91
LIMS1-214ENST00000542845 FUT9Q9Y231 359 aa3.14□□□□□ -1.91
LIMS1-214ENST00000542845 C5orf52A6NGY3 159 aa3.13□□□□□ -1.91
LIMS1-214ENST00000542845 ZFP92A6NM28 416 aa3.13□□□□□ -1.91
LIMS1-214ENST00000542845 A8MTW9 85 aa3.13□□□□□ -1.91
LIMS1-214ENST00000542845 H7BYZ3 331 aa3.13□□□□□ -1.91
LIMS1-214ENST00000542845 K7EP13 123 aa3.13□□□□□ -1.91
LIMS1-214ENST00000542845 ATP6V1G1O75348 118 aa3.13□□□□□ -1.91
LIMS1-214ENST00000542845 ZNF324O75467 553 aaPredicted RBP3.13□□□□□ -1.91
LIMS1-214ENST00000542845 IGHV3-30P01768 117 aa3.13□□□□□ -1.91
LIMS1-214ENST00000542845 IGHV3-33P01772 117 aa3.13□□□□□ -1.91
LIMS1-214ENST00000542845 SMIM18P0DKX4 95 aa3.13□□□□□ -1.91
LIMS1-214ENST00000542845 IGHV3-30-3P0DP02 117 aa3.13□□□□□ -1.91
LIMS1-214ENST00000542845 IGHV3-30-5P0DP03 117 aa3.13□□□□□ -1.91
LIMS1-214ENST00000542845 SLC25A4P12235 298 aa3.13□□□□□ -1.91
LIMS1-214ENST00000542845 GATA2P23769 480 aaPredicted RBP3.13□□□□□ -1.91
LIMS1-214ENST00000542845 PSMB9P28065 219 aa3.13□□□□□ -1.91
LIMS1-214ENST00000542845 S100GP29377 79 aa3.13□□□□□ -1.91
LIMS1-214ENST00000542845 SRIP30626 198 aa3.13□□□□□ -1.91
LIMS1-214ENST00000542845 HTR2BP41595 481 aa3.13□□□□□ -1.91
LIMS1-214ENST00000542845 GALR1P47211 349 aa3.13□□□□□ -1.91
LIMS1-214ENST00000542845 MEOX2P50222 304 aa3.13□□□□□ -1.91
LIMS1-214ENST00000542845 AKR1C2P52895 323 aa3.13□□□□□ -1.91
LIMS1-214ENST00000542845 TAS2R20P59543 309 aa3.13□□□□□ -1.91
LIMS1-214ENST00000542845 ZNF90Q03938 601 aa3.13□□□□□ -1.91
LIMS1-214ENST00000542845 CD300CQ08708 224 aa3.13□□□□□ -1.91
LIMS1-214ENST00000542845 TRAM1Q15629 374 aa3.13□□□□□ -1.91
LIMS1-214ENST00000542845 TRIM16LQ309B1 348 aa3.13□□□□□ -1.91
LIMS1-214ENST00000542845 FAM122CQ6P4D5 195 aa3.13□□□□□ -1.91
LIMS1-214ENST00000542845 LINC00612Q8N6U2 182 aa3.13□□□□□ -1.91
LIMS1-214ENST00000542845 RNASE11Q8TAA1 199 aaKnown RBP3.13□□□□□ -1.91
LIMS1-214ENST00000542845 OCC1Q8TAD7 63 aa3.13□□□□□ -1.91
LIMS1-214ENST00000542845 LRRC20Q8TCA0 184 aa3.13□□□□□ -1.91
LIMS1-214ENST00000542845 IL22RA2Q969J5 263 aa3.13□□□□□ -1.91
LIMS1-214ENST00000542845 IFT46Q9NQC8 304 aa3.13□□□□□ -1.91
LIMS1-214ENST00000542845 GSN-AS1Q9NRJ2 163 aa3.13□□□□□ -1.91
LIMS1-214ENST00000542845 HHLA3Q9XRX5 114 aa3.13□□□□□ -1.91
LIMS1-214ENST00000542845 TRAV12-3A0A0B4J271 114 aa3.12□□□□□ -1.91
LIMS1-214ENST00000542845 TRGV4A0A0C4DH28 118 aa3.12□□□□□ -1.91
LIMS1-214ENST00000542845 CEBPZOSA8MTT3 80 aa3.12□□□□□ -1.91
LIMS1-214ENST00000542845 SNRPGP15A8MWD9 76 aa3.12□□□□□ -1.91
LIMS1-214ENST00000542845 IGKV1-5P01602 117 aa3.12□□□□□ -1.91
LIMS1-214ENST00000542845 PRSS2P07478 247 aa3.12□□□□□ -1.91
LIMS1-214ENST00000542845 MYL9P24844 172 aa3.12□□□□□ -1.91
LIMS1-214ENST00000542845 CDKN1BP46527 198 aa3.12□□□□□ -1.91
LIMS1-214ENST00000542845 TSPAN5P62079 268 aa3.12□□□□□ -1.91
LIMS1-214ENST00000542845 KLF9Q13886 244 aaPredicted RBP3.12□□□□□ -1.91
Retrieved 100 of 20,778 RNA–protein pairs in 56.2 ms