RNA–Protein interactions for RNA: ENST00000542641.5

YBX3-213, Transcript of Y-box binding protein 3, humanhuman

TSL 4

Gene YBX3, Length 669 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3-213ENST00000542641 SAMD13Q5VXD3 122 aa8.67□□□□□ -1.02
YBX3-213ENST00000542641 FAM213BQ8TBF2 198 aa8.67□□□□□ -1.02
YBX3-213ENST00000542641 RNF141Q8WVD5 230 aa8.67□□□□□ -1.02
YBX3-213ENST00000542641 PHYHIPLQ96FC7 376 aa8.67□□□□□ -1.02
YBX3-213ENST00000542641 C16orf92Q96LL3 132 aa8.67□□□□□ -1.02
YBX3-213ENST00000542641 C17orf77Q96MU5 243 aa8.67□□□□□ -1.02
YBX3-213ENST00000542641 H3BTX0 84 aa8.66□□□□□ -1.02
YBX3-213ENST00000542641 CD7P09564 240 aa8.66□□□□□ -1.02
YBX3-213ENST00000542641 OR10J4P0C629 311 aa8.66□□□□□ -1.02
YBX3-213ENST00000542641 STAG3L2P0CL84 134 aa8.66□□□□□ -1.02
YBX3-213ENST00000542641 STAG3L3P0CL85 134 aa8.66□□□□□ -1.02
YBX3-213ENST00000542641 HIST1H1EP10412 219 aaKnown RBP8.66□□□□□ -1.02
YBX3-213ENST00000542641 ID1P41134 155 aa8.66□□□□□ -1.02
YBX3-213ENST00000542641 RAB5CP51148 216 aa8.66□□□□□ -1.02
YBX3-213ENST00000542641 CMC4P56277 68 aaPredicted RBP8.66□□□□□ -1.02
YBX3-213ENST00000542641 SNRPD3P62318 126 aaKnown RBP8.66□□□□□ -1.02
YBX3-213ENST00000542641 ZNF726P1Q15940 193 aa8.66□□□□□ -1.02
YBX3-213ENST00000542641 GUK1Q16774 197 aa8.66□□□□□ -1.02
YBX3-213ENST00000542641 LCN15Q6UWW0 184 aa8.66□□□□□ -1.02
YBX3-213ENST00000542641 ALKAL2Q6UX46 152 aa8.66□□□□□ -1.02
YBX3-213ENST00000542641 DPPA3Q6W0C5 159 aa8.66□□□□□ -1.02
YBX3-213ENST00000542641 PQLC2Q6ZP29 291 aa8.66□□□□□ -1.02
YBX3-213ENST00000542641 FAM24BQ8N5W8 94 aa8.66□□□□□ -1.02
YBX3-213ENST00000542641 BLNKQ8WV28 456 aa8.66□□□□□ -1.02
YBX3-213ENST00000542641 ZNF503Q96F45 646 aa8.66□□□□□ -1.02
YBX3-213ENST00000542641 ZNF586Q9NXT0 402 aa8.66□□□□□ -1.02
YBX3-213ENST00000542641 ISLRO14498 428 aa8.65□□□□□ -1.02
YBX3-213ENST00000542641 SOCS3O14543 225 aa8.65□□□□□ -1.02
YBX3-213ENST00000542641 CXorf1O96002 111 aa8.65□□□□□ -1.02
YBX3-213ENST00000542641 PRB2P02812 416 aaPredicted RBP8.65□□□□□ -1.02
YBX3-213ENST00000542641 NBEAP1P0C6P0 100 aa8.65□□□□□ -1.02
YBX3-213ENST00000542641 ZNF688P0C7X2 276 aa8.65□□□□□ -1.02
YBX3-213ENST00000542641 ARL14EPLP0DKL9 152 aa8.65□□□□□ -1.02
YBX3-213ENST00000542641 PSMB3P49720 205 aa8.65□□□□□ -1.02
YBX3-213ENST00000542641 SULT1A2P50226 295 aa8.65□□□□□ -1.02
YBX3-213ENST00000542641 UBE2L3P68036 154 aaKnown RBP8.65□□□□□ -1.02
YBX3-213ENST00000542641 FAM74A1Q5RGS3 127 aa8.65□□□□□ -1.02
YBX3-213ENST00000542641 SSX7Q7RTT5 188 aa8.65□□□□□ -1.02
YBX3-213ENST00000542641 FXYD5Q96DB9 178 aa8.65□□□□□ -1.02
YBX3-213ENST00000542641 UBQLN2Q9UHD9 624 aa8.65□□□□□ -1.02
YBX3-213ENST00000542641 TRBV19A0A075B6N1 114 aa8.64□□□□□ -1.03
YBX3-213ENST00000542641 MAP1LC3B2A6NCE7 125 aa8.64□□□□□ -1.03
YBX3-213ENST00000542641 OR11H12B2RN74 326 aa8.64□□□□□ -1.03
YBX3-213ENST00000542641 H2AFB1P0C5Y9 115 aa8.64□□□□□ -1.03
YBX3-213ENST00000542641 PDE6HQ13956 83 aa8.64□□□□□ -1.03
YBX3-213ENST00000542641 ODF3L2Q3SX64 289 aa8.64□□□□□ -1.03
YBX3-213ENST00000542641 PSMG4Q5JS54 123 aa8.64□□□□□ -1.03
YBX3-213ENST00000542641 IGFL4Q6B9Z1 124 aa8.64□□□□□ -1.03
YBX3-213ENST00000542641 IQCF2Q8IXL9 164 aa8.64□□□□□ -1.03
YBX3-213ENST00000542641 Q8N1Y9 231 aa8.64□□□□□ -1.03
YBX3-213ENST00000542641 SFT2D1Q8WV19 159 aa8.64□□□□□ -1.03
YBX3-213ENST00000542641 SAT2Q96F10 170 aaPredicted RBP8.64□□□□□ -1.03
YBX3-213ENST00000542641 LINC00052Q96N35 136 aa8.64□□□□□ -1.03
YBX3-213ENST00000542641 SLC50A1Q9BRV3 221 aa8.64□□□□□ -1.03
YBX3-213ENST00000542641 MAP1LC3BQ9GZQ8 125 aa8.64□□□□□ -1.03
YBX3-213ENST00000542641 MAP6D1Q9H9H5 199 aa8.64□□□□□ -1.03
YBX3-213ENST00000542641 AURKAIP1Q9NWT8 199 aaPredicted RBP8.64□□□□□ -1.03
YBX3-213ENST00000542641 DNAH3Q8TD57 4116 aa8.64□□□□□ -1.03
YBX3-213ENST00000542641 TRAV8-2A0A0B4J237 113 aa8.63□□□□□ -1.03
YBX3-213ENST00000542641 SLC17A3O00476 420 aa8.63□□□□□ -1.03
YBX3-213ENST00000542641 ZNF253O75346 499 aa8.63□□□□□ -1.03
YBX3-213ENST00000542641 NDUFB4O95168 129 aa8.63□□□□□ -1.03
YBX3-213ENST00000542641 GCHFRP30047 84 aa8.63□□□□□ -1.03
YBX3-213ENST00000542641 FGF8P55075 233 aaPredicted RBP8.63□□□□□ -1.03
YBX3-213ENST00000542641 DEFB131AP59861 70 aa8.63□□□□□ -1.03
YBX3-213ENST00000542641 PSG9Q00887 426 aa8.63□□□□□ -1.03
YBX3-213ENST00000542641 APRG1Q8IVJ8 170 aa8.63□□□□□ -1.03
YBX3-213ENST00000542641 MBD3L1Q8WWY6 194 aa8.63□□□□□ -1.03
YBX3-213ENST00000542641 FAM110AQ9BQ89 295 aa8.63□□□□□ -1.03
YBX3-213ENST00000542641 ZNF331Q9NQX6 463 aaPredicted RBP8.63□□□□□ -1.03
YBX3-213ENST00000542641 TMEM167BQ9NRX6 74 aa8.63□□□□□ -1.03
YBX3-213ENST00000542641 A0A1B0GV50 99 aa8.62□□□□□ -1.03
YBX3-213ENST00000542641 ZNF705EA8MWA4 302 aaPredicted RBP8.62□□□□□ -1.03
YBX3-213ENST00000542641 RANP62826 216 aaKnown RBP8.62□□□□□ -1.03
YBX3-213ENST00000542641 TEX261Q6UWH6 196 aa8.62□□□□□ -1.03
YBX3-213ENST00000542641 DEFB125Q8N687 156 aa8.62□□□□□ -1.03
YBX3-213ENST00000542641 RNF182Q8N6D2 247 aa8.62□□□□□ -1.03
YBX3-213ENST00000542641 C20orf173Q96LM9 149 aa8.62□□□□□ -1.03
YBX3-213ENST00000542641 WFDC10AQ9H1F0 79 aa8.62□□□□□ -1.03
YBX3-213ENST00000542641 AAMDCQ9H7C9 122 aa8.62□□□□□ -1.03
YBX3-213ENST00000542641 C19orf73Q9NVV2 129 aa8.62□□□□□ -1.03
YBX3-213ENST00000542641 CLEC5AQ9NY25 188 aa8.62□□□□□ -1.03
YBX3-213ENST00000542641 SORL1Q92673 2214 aa8.62□□□□□ -1.03
YBX3-213ENST00000542641 NBEAL1Q6ZS30 2694 aa8.61□□□□□ -1.03
YBX3-213ENST00000542641 NOTCH1P46531 2555 aa8.61□□□□□ -1.03
YBX3-213ENST00000542641 HLA-DMBP28068 263 aa8.61□□□□□ -1.03
YBX3-213ENST00000542641 ZNF124Q15973 351 aa8.61□□□□□ -1.03
YBX3-213ENST00000542641 PSG3Q16557 428 aa8.61□□□□□ -1.03
YBX3-213ENST00000542641 LYPD1Q8N2G4 141 aa8.61□□□□□ -1.03
YBX3-213ENST00000542641 EXOC3-AS1Q8N2X6 119 aa8.61□□□□□ -1.03
YBX3-213ENST00000542641 SUN5Q8TC36 379 aa8.61□□□□□ -1.03
YBX3-213ENST00000542641 TMPRSS5Q9H3S3 457 aa8.61□□□□□ -1.03
YBX3-213ENST00000542641 TUBA4BQ9H853 241 aa8.61□□□□□ -1.03
YBX3-213ENST00000542641 TEX46H3BTG2 121 aa8.6□□□□□ -1.03
YBX3-213ENST00000542641 K7EIL1 84 aa8.6□□□□□ -1.03
YBX3-213ENST00000542641 IFNA7P01567 189 aa8.6□□□□□ -1.03
YBX3-213ENST00000542641 HBE1P02100 147 aa8.6□□□□□ -1.03
YBX3-213ENST00000542641 DEFA6Q01524 100 aa8.6□□□□□ -1.03
YBX3-213ENST00000542641 ICAM4Q14773 271 aa8.6□□□□□ -1.03
YBX3-213ENST00000542641 DEFB121Q5J5C9 76 aa8.6□□□□□ -1.03
Retrieved 100 of 20,778 RNA–protein pairs in 108.4 ms