RNA–Protein interactions for RNA: ENST00000540304.5

CLIP1-212, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 5

Gene CLIP1, Length 2,554 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-212ENST00000540304 ADIRFQ15847 76 aa7.64□□□□□ -1.19
CLIP1-212ENST00000540304 WNT10AQ9GZT5 417 aa7.64□□□□□ -1.19
CLIP1-212ENST00000540304 CTDSP1Q9GZU7 261 aa7.64□□□□□ -1.19
CLIP1-212ENST00000540304 PPDPFQ9H3Y8 114 aa7.64□□□□□ -1.19
CLIP1-212ENST00000540304 VPREB3Q9UKI3 123 aa7.64□□□□□ -1.19
CLIP1-212ENST00000540304 MRPS16Q9Y3D3 137 aaKnown RBP7.64□□□□□ -1.19
CLIP1-212ENST00000540304 IGHV4-61A0A0C4DH41 118 aa7.64□□□□□ -1.19
CLIP1-212ENST00000540304 NCBP2LA6PVI3 153 aaKnown RBP7.64□□□□□ -1.19
CLIP1-212ENST00000540304 FAM106CPP0CH98 169 aa7.64□□□□□ -1.19
CLIP1-212ENST00000540304 SAA4P35542 130 aa7.64□□□□□ -1.19
CLIP1-212ENST00000540304 AMTP48728 403 aa7.64□□□□□ -1.19
CLIP1-212ENST00000540304 RPL23P62829 140 aaKnown RBP7.64□□□□□ -1.19
CLIP1-212ENST00000540304 SUMO1P63165 101 aaKnown RBP7.64□□□□□ -1.19
CLIP1-212ENST00000540304 C10orf113Q5VZT2 155 aa7.64□□□□□ -1.19
CLIP1-212ENST00000540304 MTURNQ8N3F0 131 aa7.64□□□□□ -1.19
CLIP1-212ENST00000540304 ZNF503Q96F45 646 aa7.64□□□□□ -1.19
CLIP1-212ENST00000540304 AJUBAQ96IF1 538 aa7.64□□□□□ -1.19
CLIP1-212ENST00000540304 GAGE12HA6NDE8 117 aa7.63□□□□□ -1.19
CLIP1-212ENST00000540304 I3L2K1 104 aa7.63□□□□□ -1.19
CLIP1-212ENST00000540304 NDUFB4O95168 129 aa7.63□□□□□ -1.19
CLIP1-212ENST00000540304 ARPC1AQ92747 370 aa7.63□□□□□ -1.19
CLIP1-212ENST00000540304 BTF3L4Q96K17 158 aa7.63□□□□□ -1.19
CLIP1-212ENST00000540304 NPFFO15130 113 aa7.63□□□□□ -1.19
CLIP1-212ENST00000540304 SCGB2A1O75556 95 aa7.63□□□□□ -1.19
CLIP1-212ENST00000540304 PAX8Q06710 450 aa7.63□□□□□ -1.19
CLIP1-212ENST00000540304 UHRF2Q96PU4 802 aa7.63□□□□□ -1.19
CLIP1-212ENST00000540304 FAM103A1Q9BTL3 118 aaKnown RBP7.63□□□□□ -1.19
CLIP1-212ENST00000540304 SLC25A2Q9BXI2 301 aa7.63□□□□□ -1.19
CLIP1-212ENST00000540304 CDC42EP3Q9UKI2 254 aa7.63□□□□□ -1.19
CLIP1-212ENST00000540304 SCO2A0A1W2PP80 73 aa7.62□□□□□ -1.19
CLIP1-212ENST00000540304 CNN1P51911 297 aaKnown RBP7.62□□□□□ -1.19
CLIP1-212ENST00000540304 CX3CL1P78423 397 aa7.62□□□□□ -1.19
CLIP1-212ENST00000540304 GAGE5Q13069 117 aa7.62□□□□□ -1.19
CLIP1-212ENST00000540304 GAGE6Q13070 117 aa7.62□□□□□ -1.19
CLIP1-212ENST00000540304 MORN5Q5VZ52 161 aa7.62□□□□□ -1.19
CLIP1-212ENST00000540304 PATE2Q6UY27 113 aa7.62□□□□□ -1.19
CLIP1-212ENST00000540304 C11orf52Q96A22 123 aa7.62□□□□□ -1.19
CLIP1-212ENST00000540304 FAM167A-AS1Q96KT0 104 aa7.62□□□□□ -1.19
CLIP1-212ENST00000540304 HSPB9Q9BQS6 159 aa7.62□□□□□ -1.19
CLIP1-212ENST00000540304 NAA38Q9BRA0 125 aaKnown RBP7.62□□□□□ -1.19
CLIP1-212ENST00000540304 ZNF355PQ9NSJ1 428 aa7.62□□□□□ -1.19
CLIP1-212ENST00000540304 C1RLQ9NZP8 487 aa7.62□□□□□ -1.19
CLIP1-212ENST00000540304 RNF114Q9Y508 228 aa7.62□□□□□ -1.19
CLIP1-212ENST00000540304 CENPVL3A0A0U1RRI6 287 aa7.62□□□□□ -1.19
CLIP1-212ENST00000540304 NPIPB5A8MRT5 1133 aa7.62□□□□□ -1.19
CLIP1-212ENST00000540304 CLEC12BQ2HXU8 276 aa7.62□□□□□ -1.19
CLIP1-212ENST00000540304 OR5AU1Q8NGC0 362 aa7.62□□□□□ -1.19
CLIP1-212ENST00000540304 PERPQ96FX8 193 aa7.62□□□□□ -1.19
CLIP1-212ENST00000540304 FBN2P35556 2912 aa7.61□□□□□ -1.19
CLIP1-212ENST00000540304 IGHV4-30-2A0A087WSY4 118 aa7.61□□□□□ -1.19
CLIP1-212ENST00000540304 TRAV5A0A0B4J249 113 aa7.61□□□□□ -1.19
CLIP1-212ENST00000540304 COX6B1P14854 86 aa7.61□□□□□ -1.19
CLIP1-212ENST00000540304 UBE2L3P68036 154 aaKnown RBP7.61□□□□□ -1.19
CLIP1-212ENST00000540304 FAM120AOSQ5T036 256 aa7.61□□□□□ -1.19
CLIP1-212ENST00000540304 GTF2H5Q6ZYL4 71 aa7.61□□□□□ -1.19
CLIP1-212ENST00000540304 ZANQ9Y493 2812 aa7.61□□□□□ -1.19
CLIP1-212ENST00000540304 A0A1W2PRE2 83 aa7.61□□□□□ -1.19
CLIP1-212ENST00000540304 K7EIM0 57 aa7.61□□□□□ -1.19
CLIP1-212ENST00000540304 ZNF207O43670 478 aaKnown RBP7.61□□□□□ -1.19
CLIP1-212ENST00000540304 ORM2P19652 201 aa7.61□□□□□ -1.19
CLIP1-212ENST00000540304 NDPQ00604 133 aa7.61□□□□□ -1.19
CLIP1-212ENST00000540304 SRSF1Q07955 248 aaKnown RBP eCLIP7.61□□□□□ -1.19
CLIP1-212ENST00000540304 ACTL10Q5JWF8 245 aa7.61□□□□□ -1.19
CLIP1-212ENST00000540304 ASPHD1Q5U4P2 390 aa7.61□□□□□ -1.19
CLIP1-212ENST00000540304 PET117Q6UWS5 81 aa7.61□□□□□ -1.19
CLIP1-212ENST00000540304 C16orf82Q7Z2V1 217 aa7.61□□□□□ -1.19
CLIP1-212ENST00000540304 LINC00305Q7Z4B0 112 aa7.61□□□□□ -1.19
CLIP1-212ENST00000540304 Q8N976 141 aa7.61□□□□□ -1.19
CLIP1-212ENST00000540304 Q8N9W7 124 aa7.61□□□□□ -1.19
CLIP1-212ENST00000540304 NECAP1Q8NC96 275 aa7.61□□□□□ -1.19
CLIP1-212ENST00000540304 OR4F17Q8NGA8 305 aa7.61□□□□□ -1.19
CLIP1-212ENST00000540304 ABCA12Q86UK0 2595 aa7.61□□□□□ -1.19
CLIP1-212ENST00000540304 GAGE10A6NGK3 116 aa7.6□□□□□ -1.19
CLIP1-212ENST00000540304 DSCR9P59020 149 aa7.6□□□□□ -1.19
CLIP1-212ENST00000540304 CD300EQ496F6 205 aaPredicted RBP7.6□□□□□ -1.19
CLIP1-212ENST00000540304 UFSP1Q6NVU6 142 aa7.6□□□□□ -1.19
CLIP1-212ENST00000540304 TTC9CQ8N5M4 171 aa7.6□□□□□ -1.19
CLIP1-212ENST00000540304 CMTM2Q8TAZ6 248 aa7.6□□□□□ -1.19
CLIP1-212ENST00000540304 RAX2Q96IS3 184 aa7.6□□□□□ -1.19
CLIP1-212ENST00000540304 IMMP2LQ96T52 175 aa7.6□□□□□ -1.19
CLIP1-212ENST00000540304 RASL11BQ9BPW5 248 aa7.6□□□□□ -1.19
CLIP1-212ENST00000540304 PAXXQ9BUH6 204 aa7.6□□□□□ -1.19
CLIP1-212ENST00000540304 SERTAD4Q9NUC0 356 aa7.6□□□□□ -1.19
CLIP1-212ENST00000540304 IGLV11-55A0A075B6I3 123 aa7.6□□□□□ -1.19
CLIP1-212ENST00000540304 IGHV1-69DA0A0B4J2H0 117 aa7.6□□□□□ -1.19
CLIP1-212ENST00000540304 IGHV1-69P01742 117 aa7.6□□□□□ -1.19
CLIP1-212ENST00000540304 HLA-DRB1P01911 266 aa7.6□□□□□ -1.19
CLIP1-212ENST00000540304 NDFIP1Q9BT67 221 aa7.6□□□□□ -1.19
CLIP1-212ENST00000540304 ANKRD17O75179 2603 aaKnown RBP7.59□□□□□ -1.19
CLIP1-212ENST00000540304 TRBV20OR9-2A0A075B6H5 130 aa7.59□□□□□ -1.19
CLIP1-212ENST00000540304 IGHV7-81A0A0B4J1V7 117 aa7.59□□□□□ -1.19
CLIP1-212ENST00000540304 TEX48A0A1B0GUV7 120 aa7.59□□□□□ -1.19
CLIP1-212ENST00000540304 WIPF1O43516 503 aa7.59□□□□□ -1.19
CLIP1-212ENST00000540304 CD99P14209 185 aa7.59□□□□□ -1.19
CLIP1-212ENST00000540304 MPV17L2Q567V2 206 aa7.59□□□□□ -1.19
CLIP1-212ENST00000540304 NRGNQ92686 78 aa7.59□□□□□ -1.19
CLIP1-212ENST00000540304 MRPL16Q9NX20 251 aaKnown RBP7.59□□□□□ -1.19
CLIP1-212ENST00000540304 ERG28Q9UKR5 140 aa7.59□□□□□ -1.19
CLIP1-212ENST00000540304 CSDC2Q9Y534 153 aaKnown RBP7.59□□□□□ -1.19
CLIP1-212ENST00000540304 USP9YO00507 2555 aaPredicted RBP7.59□□□□□ -1.19
Retrieved 100 of 20,778 RNA–protein pairs in 65.5 ms