RNA–Protein interactions for RNA: ENST00000532602.1

PCDHA9-202, Transcript of protocadherin alpha 9, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PCDHA9, Length 6,293 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHA9-202ENST00000532602 TEX43Q6ZNM6 134 aa11.97□□□□□ -0.49
PCDHA9-202ENST00000532602 Q6ZR03 302 aa11.97□□□□□ -0.49
PCDHA9-202ENST00000532602 RASL10AQ92737 203 aa11.97□□□□□ -0.49
PCDHA9-202ENST00000532602 ST6GALNAC6Q969X2 333 aa11.97□□□□□ -0.49
PCDHA9-202ENST00000532602 IGHV2-70DA0A0C4DH43 119 aa11.96□□□□□ -0.49
PCDHA9-202ENST00000532602 PDE6HQ13956 83 aa11.96□□□□□ -0.49
PCDHA9-202ENST00000532602 RASL11AQ6T310 242 aa11.96□□□□□ -0.49
PCDHA9-202ENST00000532602 LINC01619G3V211 115 aa11.96□□□□□ -0.49
PCDHA9-202ENST00000532602 ETV2O00321 342 aaPredicted RBP11.96□□□□□ -0.49
PCDHA9-202ENST00000532602 PSG3Q16557 428 aa11.96□□□□□ -0.49
PCDHA9-202ENST00000532602 FAM215AQ9Y5M1 114 aa11.96□□□□□ -0.49
PCDHA9-202ENST00000532602 TRAV2A0A0B4J234 112 aa11.96□□□□□ -0.49
PCDHA9-202ENST00000532602 E9PQ18 207 aa11.96□□□□□ -0.49
PCDHA9-202ENST00000532602 IGHV3-53P01767 116 aa11.96□□□□□ -0.5
PCDHA9-202ENST00000532602 RNASE2P10153 161 aaKnown RBP11.96□□□□□ -0.5
PCDHA9-202ENST00000532602 SRSF4Q08170 494 aaKnown RBP11.96□□□□□ -0.5
PCDHA9-202ENST00000532602 C1QL4Q86Z23 238 aa11.96□□□□□ -0.5
PCDHA9-202ENST00000532602 PLEKHB2Q96CS7 222 aa11.96□□□□□ -0.5
PCDHA9-202ENST00000532602 DENND4CQ5VZ89 1909 aa11.96□□□□□ -0.5
PCDHA9-202ENST00000532602 NDUFB8O95169 186 aa11.96□□□□□ -0.5
PCDHA9-202ENST00000532602 DEFB131AP59861 70 aa11.96□□□□□ -0.5
PCDHA9-202ENST00000532602 SPCS1Q9Y6A9 102 aa11.96□□□□□ -0.5
PCDHA9-202ENST00000532602 TMEM238C9JI98 176 aa11.95□□□□□ -0.5
PCDHA9-202ENST00000532602 TMEM242Q9NWH2 141 aa11.95□□□□□ -0.5
PCDHA9-202ENST00000532602 GGTLC3B5MD39 225 aa11.95□□□□□ -0.5
PCDHA9-202ENST00000532602 LY96Q9Y6Y9 160 aa11.95□□□□□ -0.5
PCDHA9-202ENST00000532602 LYZL1Q6UWQ5 148 aa11.95□□□□□ -0.5
PCDHA9-202ENST00000532602 OR2K2Q8NGT1 345 aa11.95□□□□□ -0.5
PCDHA9-202ENST00000532602 TRAV9-2A0A087WT02 112 aa11.94□□□□□ -0.5
PCDHA9-202ENST00000532602 CD300EQ496F6 205 aaPredicted RBP11.94□□□□□ -0.5
PCDHA9-202ENST00000532602 FAM90A2PQ658T7 463 aa11.94□□□□□ -0.5
PCDHA9-202ENST00000532602 WDR86Q86TI4 376 aa11.94□□□□□ -0.5
PCDHA9-202ENST00000532602 A0A0G2JRQ6 117 aa11.94□□□□□ -0.5
PCDHA9-202ENST00000532602 DEFB130BP0DP73 79 aa11.94□□□□□ -0.5
PCDHA9-202ENST00000532602 DEFB130AP0DP74 79 aa11.94□□□□□ -0.5
PCDHA9-202ENST00000532602 ERCC8Q13216 396 aa11.94□□□□□ -0.5
PCDHA9-202ENST00000532602 NIT1Q86X76 327 aa11.94□□□□□ -0.5
PCDHA9-202ENST00000532602 LINC00518Q8N0U6 118 aa11.94□□□□□ -0.5
PCDHA9-202ENST00000532602 RPP25LQ8N5L8 163 aaKnown RBP11.94□□□□□ -0.5
PCDHA9-202ENST00000532602 RHODO00212 210 aa11.94□□□□□ -0.5
PCDHA9-202ENST00000532602 SH2D1AO60880 128 aa11.94□□□□□ -0.5
PCDHA9-202ENST00000532602 ATP6V0E1O15342 81 aa11.94□□□□□ -0.5
PCDHA9-202ENST00000532602 CFHR2P36980 270 aa11.94□□□□□ -0.5
PCDHA9-202ENST00000532602 SHANK2-AS3Q9BTD1 123 aa11.94□□□□□ -0.5
PCDHA9-202ENST00000532602 TMEM249Q2WGJ8 235 aa11.93□□□□□ -0.5
PCDHA9-202ENST00000532602 RSPO3Q9BXY4 272 aaPredicted RBP11.93□□□□□ -0.5
PCDHA9-202ENST00000532602 LMO1P25800 156 aa11.93□□□□□ -0.5
PCDHA9-202ENST00000532602 C6orf226Q5I0X4 101 aa11.93□□□□□ -0.5
PCDHA9-202ENST00000532602 Q8TAT8 98 aa11.93□□□□□ -0.5
PCDHA9-202ENST00000532602 NHP2Q9NX24 153 aaKnown RBP11.93□□□□□ -0.5
PCDHA9-202ENST00000532602 NOTCH3Q9UM47 2321 aa11.93□□□□□ -0.5
PCDHA9-202ENST00000532602 FOXL1Q12952 345 aa11.93□□□□□ -0.5
PCDHA9-202ENST00000532602 C1orf159Q96HA4 380 aa11.93□□□□□ -0.5
PCDHA9-202ENST00000532602 A0A0U1RRA0 63 aa11.92□□□□□ -0.5
PCDHA9-202ENST00000532602 YPEL3P61236 119 aaPredicted RBP11.92□□□□□ -0.5
PCDHA9-202ENST00000532602 C11orf68Q9H3H3 251 aaKnown RBP11.92□□□□□ -0.5
PCDHA9-202ENST00000532602 D6R8Y8 96 aa11.92□□□□□ -0.5
PCDHA9-202ENST00000532602 SS18Q15532 418 aa11.92□□□□□ -0.5
PCDHA9-202ENST00000532602 ATRAIDQ6UW56 229 aa11.92□□□□□ -0.5
PCDHA9-202ENST00000532602 IGFBPL1Q8WX77 278 aa11.92□□□□□ -0.5
PCDHA9-202ENST00000532602 C15orf62A8K5M9 175 aa11.92□□□□□ -0.5
PCDHA9-202ENST00000532602 PAX4O43316 350 aa11.92□□□□□ -0.5
PCDHA9-202ENST00000532602 TRBV24-1A0A075B6N3 115 aa11.92□□□□□ -0.5
PCDHA9-202ENST00000532602 KIAA2026Q5HYC2 2103 aa11.92□□□□□ -0.5
PCDHA9-202ENST00000532602 C1orf122Q6ZSJ8 110 aa11.92□□□□□ -0.5
PCDHA9-202ENST00000532602 A0A1B0GW64 132 aa11.91□□□□□ -0.5
PCDHA9-202ENST00000532602 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP11.91□□□□□ -0.5
PCDHA9-202ENST00000532602 A0A1W2PPI3 338 aa11.91□□□□□ -0.5
PCDHA9-202ENST00000532602 TRAV16A0A0A6YYK6 109 aaPredicted RBP11.91□□□□□ -0.5
PCDHA9-202ENST00000532602 COL4A3Q01955 1670 aa11.91□□□□□ -0.5
PCDHA9-202ENST00000532602 HOXA3O43365 443 aaPredicted RBP11.91□□□□□ -0.5
PCDHA9-202ENST00000532602 NDUFS7O75251 213 aa11.91□□□□□ -0.5
PCDHA9-202ENST00000532602 NCR2O95944 276 aa11.91□□□□□ -0.5
PCDHA9-202ENST00000532602 M0R2P5 195 aa11.91□□□□□ -0.5
PCDHA9-202ENST00000532602 LSM4Q9Y4Z0 139 aaKnown RBP11.91□□□□□ -0.5
PCDHA9-202ENST00000532602 DAD1P61803 113 aa11.9□□□□□ -0.5
PCDHA9-202ENST00000532602 LINC01551Q86U37 167 aa11.9□□□□□ -0.5
PCDHA9-202ENST00000532602 C14orf178Q8N769 122 aaPredicted RBP11.9□□□□□ -0.5
PCDHA9-202ENST00000532602 VOPP1Q96AW1 172 aa11.9□□□□□ -0.5
PCDHA9-202ENST00000532602 APOC4P55056 127 aa11.9□□□□□ -0.5
PCDHA9-202ENST00000532602 F8WEM9 126 aa11.9□□□□□ -0.5
PCDHA9-202ENST00000532602 MST1LQ2TV78 715 aa11.9□□□□□ -0.5
PCDHA9-202ENST00000532602 LAMTOR2Q9Y2Q5 125 aa11.9□□□□□ -0.5
PCDHA9-202ENST00000532602 G3V318 75 aa11.9□□□□□ -0.5
PCDHA9-202ENST00000532602 C1orf194Q5T5A4 169 aa11.9□□□□□ -0.5
PCDHA9-202ENST00000532602 DOCK7Q96N67 2140 aa11.9□□□□□ -0.51
PCDHA9-202ENST00000532602 FAM120AOSQ5T036 256 aa11.89□□□□□ -0.51
PCDHA9-202ENST00000532602 DERL1Q9BUN8 251 aa11.89□□□□□ -0.51
PCDHA9-202ENST00000532602 IGKV1-6A0A0C4DH72 117 aa11.89□□□□□ -0.51
PCDHA9-202ENST00000532602 HEATR5AQ86XA9 2040 aa11.89□□□□□ -0.51
PCDHA9-202ENST00000532602 IGHV3-64A0A075B6Q5 118 aa11.89□□□□□ -0.51
PCDHA9-202ENST00000532602 LINC00311Q8N616 119 aa11.89□□□□□ -0.51
PCDHA9-202ENST00000532602 REG4Q9BYZ8 158 aa11.89□□□□□ -0.51
PCDHA9-202ENST00000532602 CSTL1Q9H114 145 aa11.89□□□□□ -0.51
PCDHA9-202ENST00000532602 MS4A6AQ9H2W1 248 aa11.89□□□□□ -0.51
PCDHA9-202ENST00000532602 LIME1Q9H400 295 aa11.89□□□□□ -0.51
PCDHA9-202ENST00000532602 ANKHD1-EIF4EBP3H7C0V5 636 aaPredicted RBP11.89□□□□□ -0.51
PCDHA9-202ENST00000532602 CDK2AP2O75956 126 aa11.89□□□□□ -0.51
PCDHA9-202ENST00000532602 ATXN8Q156A1 80 aa11.89□□□□□ -0.51
PCDHA9-202ENST00000532602 TMEM95Q3KNT9 176 aa11.88□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 69.7 ms