RNA–Protein interactions for RNA: ENST00000514305.5

USP53-208, Transcript of ubiquitin specific peptidase 53, humanhuman

TSL 2

Gene USP53, Length 504 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP53-208ENST00000514305 ZMAT4Q9H898 229 aa15.07■□□□□ 0
USP53-208ENST00000514305 CLEC5AQ9NY25 188 aa15.07■□□□□ 0
USP53-208ENST00000514305 TMEM14CQ9P0S9 112 aa15.07■□□□□ 0
USP53-208ENST00000514305 SELENOKQ9Y6D0 94 aa15.07■□□□□ 0
USP53-208ENST00000514305 CDC34P49427 236 aaPredicted RBP15.06■□□□□ 0
USP53-208ENST00000514305 CD81P60033 236 aa15.06■□□□□ 0
USP53-208ENST00000514305 FAM122CQ6P4D5 195 aa15.06■□□□□ 0
USP53-208ENST00000514305 STAB2Q8WWQ8 2551 aa15.05■□□□□ 0
USP53-208ENST00000514305 A0A087X0K7 114 aa15.05■□□□□ -0
USP53-208ENST00000514305 OR11H12B2RN74 326 aa15.05■□□□□ -0
USP53-208ENST00000514305 K7EQG2 157 aa15.05■□□□□ -0
USP53-208ENST00000514305 LCN15Q6UWW0 184 aa15.05■□□□□ -0
USP53-208ENST00000514305 PQLC2Q6ZP29 291 aa15.05■□□□□ -0
USP53-208ENST00000514305 C16orf92Q96LL3 132 aa15.05■□□□□ -0
USP53-208ENST00000514305 OR51M1Q9H341 326 aa15.05■□□□□ -0
USP53-208ENST00000514305 ISLRO14498 428 aa15.04■□□□□ -0
USP53-208ENST00000514305 OR7C2O60412 319 aa15.04■□□□□ -0
USP53-208ENST00000514305 HIST1H1EP10412 219 aaKnown RBP15.04■□□□□ -0
USP53-208ENST00000514305 RAB5CP51148 216 aa15.04■□□□□ -0
USP53-208ENST00000514305 RAB2AP61019 212 aa15.04■□□□□ -0
USP53-208ENST00000514305 DPPA3Q6W0C5 159 aa15.04■□□□□ -0
USP53-208ENST00000514305 MIR17HGQ75NE6 70 aa15.04■□□□□ -0
USP53-208ENST00000514305 DCANP1Q8TF63 244 aa15.04■□□□□ -0
USP53-208ENST00000514305 SLC50A1Q9BRV3 221 aa15.04■□□□□ -0
USP53-208ENST00000514305 PAXXQ9BUH6 204 aa15.04■□□□□ -0
USP53-208ENST00000514305 HRH4Q9H3N8 390 aa15.04■□□□□ -0
USP53-208ENST00000514305 TRAV5A0A0B4J249 113 aa15.03■□□□□ -0
USP53-208ENST00000514305 PSMB3P49720 205 aa15.03■□□□□ -0
USP53-208ENST00000514305 MUC7Q8TAX7 377 aa15.03■□□□□ -0
USP53-208ENST00000514305 RPRMQ9NS64 109 aa15.03■□□□□ -0
USP53-208ENST00000514305 CTXND1A0A1B0GTU2 59 aa15.02■□□□□ -0
USP53-208ENST00000514305 ZNF253O75346 499 aa15.02■□□□□ -0
USP53-208ENST00000514305 PDE6HQ13956 83 aa15.02■□□□□ -0
USP53-208ENST00000514305 MORN5Q5VZ52 161 aa15.02■□□□□ -0
USP53-208ENST00000514305 RPP25LQ8N5L8 163 aaKnown RBP15.02■□□□□ -0
USP53-208ENST00000514305 PHYHIPLQ96FC7 376 aa15.02■□□□□ -0
USP53-208ENST00000514305 SLC25A2Q9BXI2 301 aa15.02■□□□□ -0
USP53-208ENST00000514305 RFNGQ9Y644 331 aa15.02■□□□□ -0
USP53-208ENST00000514305 NKX2-5P52952 324 aaPredicted RBP15.01□□□□□ -0.01
USP53-208ENST00000514305 PSG9Q00887 426 aa15.01□□□□□ -0.01
USP53-208ENST00000514305 RNF141Q8WVD5 230 aa15.01□□□□□ -0.01
USP53-208ENST00000514305 TMED6Q8WW62 240 aa15.01□□□□□ -0.01
USP53-208ENST00000514305 RAB24Q969Q5 203 aa15.01□□□□□ -0.01
USP53-208ENST00000514305 TUBA4BQ9H853 241 aa15.01□□□□□ -0.01
USP53-208ENST00000514305 TEX46H3BTG2 121 aa15□□□□□ -0.01
USP53-208ENST00000514305 MRPS12O15235 138 aaKnown RBP15□□□□□ -0.01
USP53-208ENST00000514305 CXorf1O96002 111 aa15□□□□□ -0.01
USP53-208ENST00000514305 CD7P09564 240 aa15□□□□□ -0.01
USP53-208ENST00000514305 NBEAP1P0C6P0 100 aa15□□□□□ -0.01
USP53-208ENST00000514305 IGHV4-30-4P0DP06 118 aa15□□□□□ -0.01
USP53-208ENST00000514305 SPATA31B1PQ5VZV4 182 aa15□□□□□ -0.01
USP53-208ENST00000514305 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa15□□□□□ -0.01
USP53-208ENST00000514305 RYR3Q15413 4870 aa14.99□□□□□ -0.01
USP53-208ENST00000514305 STAG3L2P0CL84 134 aa14.99□□□□□ -0.01
USP53-208ENST00000514305 STAG3L3P0CL85 134 aa14.99□□□□□ -0.01
USP53-208ENST00000514305 IGLC2P0DOY2 106 aa14.99□□□□□ -0.01
USP53-208ENST00000514305 UBE2L3P68036 154 aaKnown RBP14.99□□□□□ -0.01
USP53-208ENST00000514305 FAM167A-AS1Q96KT0 104 aa14.99□□□□□ -0.01
USP53-208ENST00000514305 LINC00052Q96N35 136 aa14.99□□□□□ -0.01
USP53-208ENST00000514305 AAMDCQ9H7C9 122 aa14.99□□□□□ -0.01
USP53-208ENST00000514305 TMEM167BQ9NRX6 74 aa14.99□□□□□ -0.01
USP53-208ENST00000514305 TRBV19A0A075B6N1 114 aa14.98□□□□□ -0.01
USP53-208ENST00000514305 ZNF688P0C7X2 276 aa14.98□□□□□ -0.01
USP53-208ENST00000514305 DEFB131AP59861 70 aa14.98□□□□□ -0.01
USP53-208ENST00000514305 FAM74A1Q5RGS3 127 aa14.98□□□□□ -0.01
USP53-208ENST00000514305 CASC10Q5T4H9 136 aa14.98□□□□□ -0.01
USP53-208ENST00000514305 LYPD1Q8N2G4 141 aa14.98□□□□□ -0.01
USP53-208ENST00000514305 MAP6D1Q9H9H5 199 aa14.98□□□□□ -0.01
USP53-208ENST00000514305 PRELID1Q9Y255 219 aa14.98□□□□□ -0.01
USP53-208ENST00000514305 HUWE1Q7Z6Z7 4374 aaKnown RBP14.98□□□□□ -0.01
USP53-208ENST00000514305 PYYP10082 97 aa14.97□□□□□ -0.01
USP53-208ENST00000514305 PSMG4Q5JS54 123 aa14.97□□□□□ -0.01
USP53-208ENST00000514305 Q8N1Y9 231 aa14.97□□□□□ -0.01
USP53-208ENST00000514305 FAM213BQ8TBF2 198 aa14.97□□□□□ -0.01
USP53-208ENST00000514305 BLNKQ8WV28 456 aa14.97□□□□□ -0.01
USP53-208ENST00000514305 ZNF331Q9NQX6 463 aaPredicted RBP14.97□□□□□ -0.01
USP53-208ENST00000514305 UBQLN2Q9UHD9 624 aa14.97□□□□□ -0.01
USP53-208ENST00000514305 A8MZ25 164 aa14.96□□□□□ -0.01
USP53-208ENST00000514305 SOCS3O14543 225 aa14.96□□□□□ -0.01
USP53-208ENST00000514305 SULT1A2P50226 295 aa14.96□□□□□ -0.01
USP53-208ENST00000514305 ODF3L2Q3SX64 289 aa14.96□□□□□ -0.01
USP53-208ENST00000514305 EBLN2Q6P2I7 272 aa14.96□□□□□ -0.01
USP53-208ENST00000514305 TM2D3Q9BRN9 247 aa14.96□□□□□ -0.01
USP53-208ENST00000514305 ZNF586Q9NXT0 402 aa14.96□□□□□ -0.01
USP53-208ENST00000514305 DNAH7Q8WXX0 4024 aa14.95□□□□□ -0.02
USP53-208ENST00000514305 H3BQ15 152 aa14.95□□□□□ -0.02
USP53-208ENST00000514305 OR10J4P0C629 311 aa14.95□□□□□ -0.02
USP53-208ENST00000514305 ARL14EPLP0DKL9 152 aa14.95□□□□□ -0.02
USP53-208ENST00000514305 STHQ8IWL8 128 aa14.95□□□□□ -0.02
USP53-208ENST00000514305 IQCF2Q8IXL9 164 aa14.95□□□□□ -0.02
USP53-208ENST00000514305 FXYD5Q96DB9 178 aa14.95□□□□□ -0.02
USP53-208ENST00000514305 SAT2Q96F10 170 aaPredicted RBP14.95□□□□□ -0.02
USP53-208ENST00000514305 CITED4Q96RK1 184 aa14.95□□□□□ -0.02
USP53-208ENST00000514305 MAP1LC3B2A6NCE7 125 aa14.94□□□□□ -0.02
USP53-208ENST00000514305 BOLA2-SMG1P6H3BVE0 249 aa14.94□□□□□ -0.02
USP53-208ENST00000514305 HMGB3O15347 200 aaKnown RBP14.94□□□□□ -0.02
USP53-208ENST00000514305 H2AFB1P0C5Y9 115 aa14.94□□□□□ -0.02
USP53-208ENST00000514305 PSG3Q16557 428 aa14.94□□□□□ -0.02
USP53-208ENST00000514305 DEFB125Q8N687 156 aa14.94□□□□□ -0.02
USP53-208ENST00000514305 ZNF738Q8NE65 137 aa14.94□□□□□ -0.02
Retrieved 100 of 20,778 RNA–protein pairs in 40.7 ms