RNA–Protein interactions for RNA: ENST00000511496.5

LIMCH1-213, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 3,439 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-213ENST00000511496 ADIPOQQ15848 244 aa9.6□□□□□ -0.87
LIMCH1-213ENST00000511496 TAL2Q16559 108 aa9.6□□□□□ -0.87
LIMCH1-213ENST00000511496 Q6ZS92 163 aa9.6□□□□□ -0.87
LIMCH1-213ENST00000511496 GOLT1AQ6ZVE7 132 aa9.6□□□□□ -0.87
LIMCH1-213ENST00000511496 C15orf53Q8NAA6 179 aa9.6□□□□□ -0.87
LIMCH1-213ENST00000511496 FMC1Q96HJ9 113 aa9.6□□□□□ -0.87
LIMCH1-213ENST00000511496 PLA2G2FQ9BZM2 168 aa9.6□□□□□ -0.87
LIMCH1-213ENST00000511496 FREM2Q5SZK8 3169 aa9.6□□□□□ -0.87
LIMCH1-213ENST00000511496 TCRAP04437 139 aa9.59□□□□□ -0.87
LIMCH1-213ENST00000511496 PLGLB1Q02325 96 aa9.59□□□□□ -0.87
LIMCH1-213ENST00000511496 RASL10AQ92737 203 aa9.59□□□□□ -0.87
LIMCH1-213ENST00000511496 MRPL35Q9NZE8 188 aaKnown RBP9.59□□□□□ -0.87
LIMCH1-213ENST00000511496 FRYLO94915 3013 aa9.59□□□□□ -0.87
LIMCH1-213ENST00000511496 MYMXA0A1B0GTQ4 84 aa9.59□□□□□ -0.87
LIMCH1-213ENST00000511496 ZNF503-AS2A6NEH8 195 aa9.59□□□□□ -0.87
LIMCH1-213ENST00000511496 NGBQ9NPG2 151 aa9.59□□□□□ -0.87
LIMCH1-213ENST00000511496 PCNX2A6NKB5 2137 aa9.59□□□□□ -0.87
LIMCH1-213ENST00000511496 PLXNB1O43157 2135 aa9.59□□□□□ -0.87
LIMCH1-213ENST00000511496 NCBP2LA6PVI3 153 aaKnown RBP9.59□□□□□ -0.87
LIMCH1-213ENST00000511496 TWIST1Q15672 202 aa9.59□□□□□ -0.87
LIMCH1-213ENST00000511496 MRPL51Q4U2R6 128 aaKnown RBP9.59□□□□□ -0.87
LIMCH1-213ENST00000511496 TMEM126AQ9H061 195 aa9.59□□□□□ -0.87
LIMCH1-213ENST00000511496 IFI27L2Q9H2X8 130 aa9.59□□□□□ -0.87
LIMCH1-213ENST00000511496 AAMDCQ9H7C9 122 aa9.59□□□□□ -0.87
LIMCH1-213ENST00000511496 TRBV7-3A0A075B6L6 115 aa9.58□□□□□ -0.88
LIMCH1-213ENST00000511496 SPTY2D1-AS1A0A0U1RR47 76 aa9.58□□□□□ -0.88
LIMCH1-213ENST00000511496 DLL1O00548 723 aa9.58□□□□□ -0.88
LIMCH1-213ENST00000511496 DEFB133Q30KQ1 61 aa9.58□□□□□ -0.88
LIMCH1-213ENST00000511496 OR1L4Q8NGR5 311 aa9.58□□□□□ -0.88
LIMCH1-213ENST00000511496 RTL8AQ9BWD3 113 aa9.58□□□□□ -0.88
LIMCH1-213ENST00000511496 OBP2BQ9NPH6 170 aa9.58□□□□□ -0.88
LIMCH1-213ENST00000511496 OCIAD1Q9NX40 245 aa9.58□□□□□ -0.88
LIMCH1-213ENST00000511496 OBP2AQ9NY56 170 aa9.58□□□□□ -0.88
LIMCH1-213ENST00000511496 C21orf62Q9NYP8 219 aa9.58□□□□□ -0.88
LIMCH1-213ENST00000511496 CELA2AP08217 269 aa9.58□□□□□ -0.88
LIMCH1-213ENST00000511496 CCL3P10147 92 aa9.58□□□□□ -0.88
LIMCH1-213ENST00000511496 TMEM155Q4W5P6 130 aa9.58□□□□□ -0.88
LIMCH1-213ENST00000511496 Q9H3A6 140 aa9.58□□□□□ -0.88
LIMCH1-213ENST00000511496 METRNQ9UJH8 293 aa9.58□□□□□ -0.88
LIMCH1-213ENST00000511496 CHCHD2Q9Y6H1 151 aaPredicted RBP9.58□□□□□ -0.88
LIMCH1-213ENST00000511496 LTBRP36941 435 aa9.57□□□□□ -0.88
LIMCH1-213ENST00000511496 FAM104BQ5XKR9 115 aa9.57□□□□□ -0.88
LIMCH1-213ENST00000511496 PIFOQ8TCI5 191 aa9.57□□□□□ -0.88
LIMCH1-213ENST00000511496 MYCNOSP40205 109 aa9.57□□□□□ -0.88
LIMCH1-213ENST00000511496 CD69Q07108 199 aa9.57□□□□□ -0.88
LIMCH1-213ENST00000511496 OR10J6PQ8NGY7 276 aa9.57□□□□□ -0.88
LIMCH1-213ENST00000511496 C9JAW5 83 aa9.57□□□□□ -0.88
LIMCH1-213ENST00000511496 CHCHD2P9Q5T1J5 151 aaPredicted RBP9.57□□□□□ -0.88
LIMCH1-213ENST00000511496 C1orf53Q5VUE5 145 aa9.57□□□□□ -0.88
LIMCH1-213ENST00000511496 LYZL1Q6UWQ5 148 aa9.57□□□□□ -0.88
LIMCH1-213ENST00000511496 TMEM14BQ9NUH8 114 aa9.57□□□□□ -0.88
LIMCH1-213ENST00000511496 AHCTF1Q8WYP5 2266 aa9.56□□□□□ -0.88
LIMCH1-213ENST00000511496 MRPL33O75394 65 aaKnown RBP9.56□□□□□ -0.88
LIMCH1-213ENST00000511496 Q8IYB0 196 aa9.56□□□□□ -0.88
LIMCH1-213ENST00000511496 EXOC3-AS1Q8N2X6 119 aa9.56□□□□□ -0.88
LIMCH1-213ENST00000511496 RNF138Q8WVD3 245 aa9.56□□□□□ -0.88
LIMCH1-213ENST00000511496 ONECUT1Q9UBC0 465 aa9.56□□□□□ -0.88
LIMCH1-213ENST00000511496 SCGB1D4Q6XE38 83 aa9.56□□□□□ -0.88
LIMCH1-213ENST00000511496 FAM19A5Q7Z5A7 132 aaPredicted RBP9.56□□□□□ -0.88
LIMCH1-213ENST00000511496 Q86TA4 180 aa9.56□□□□□ -0.88
LIMCH1-213ENST00000511496 ZMAT4Q9H898 229 aa9.56□□□□□ -0.88
LIMCH1-213ENST00000511496 NAV3Q8IVL0 2385 aa9.56□□□□□ -0.88
LIMCH1-213ENST00000511496 ZNF134P52741 427 aa9.56□□□□□ -0.88
LIMCH1-213ENST00000511496 FOXA2Q9Y261 457 aaPredicted RBP9.56□□□□□ -0.88
LIMCH1-213ENST00000511496 TRIOO75962 3097 aa9.56□□□□□ -0.88
LIMCH1-213ENST00000511496 SLC25A20O43772 301 aa9.55□□□□□ -0.88
LIMCH1-213ENST00000511496 ASIPP42127 132 aa9.55□□□□□ -0.88
LIMCH1-213ENST00000511496 EMP1P54849 157 aa9.55□□□□□ -0.88
LIMCH1-213ENST00000511496 PSMG4Q5JS54 123 aa9.55□□□□□ -0.88
LIMCH1-213ENST00000511496 C1orf229Q6ZS94 237 aaPredicted RBP9.55□□□□□ -0.88
LIMCH1-213ENST00000511496 DEFB119Q8N690 84 aa9.55□□□□□ -0.88
LIMCH1-213ENST00000511496 NTN5Q8WTR8 489 aaPredicted RBP9.55□□□□□ -0.88
LIMCH1-213ENST00000511496 DNAJC30Q96LL9 226 aa9.55□□□□□ -0.88
LIMCH1-213ENST00000511496 OOSP1A8MZH6 123 aa9.55□□□□□ -0.88
LIMCH1-213ENST00000511496 OVOL3O00110 214 aa9.55□□□□□ -0.88
LIMCH1-213ENST00000511496 LIFP15018 202 aa9.55□□□□□ -0.88
LIMCH1-213ENST00000511496 PAX8Q06710 450 aa9.54□□□□□ -0.88
LIMCH1-213ENST00000511496 UTF1Q5T230 341 aa9.54□□□□□ -0.88
LIMCH1-213ENST00000511496 OR11H6Q8NGC7 330 aa9.54□□□□□ -0.88
LIMCH1-213ENST00000511496 KLK5Q9Y337 293 aaPredicted RBP9.54□□□□□ -0.88
LIMCH1-213ENST00000511496 GAS8-AS1O95177 125 aa9.54□□□□□ -0.88
LIMCH1-213ENST00000511496 LYRM7Q5U5X0 104 aa9.54□□□□□ -0.88
LIMCH1-213ENST00000511496 ZNF493Q6ZR52 646 aa9.54□□□□□ -0.88
LIMCH1-213ENST00000511496 PIP4P1Q86T03 277 aa9.54□□□□□ -0.88
LIMCH1-213ENST00000511496 RITA1Q96K30 269 aa9.54□□□□□ -0.88
LIMCH1-213ENST00000511496 LINC01587Q99440 93 aa9.54□□□□□ -0.88
LIMCH1-213ENST00000511496 TRGV9Q99603 122 aa9.54□□□□□ -0.88
LIMCH1-213ENST00000511496 C12orf49Q9H741 205 aa9.54□□□□□ -0.88
LIMCH1-213ENST00000511496 RNASE2P10153 161 aaKnown RBP9.54□□□□□ -0.88
LIMCH1-213ENST00000511496 EDA2RQ9HAV5 297 aa9.54□□□□□ -0.88
LIMCH1-213ENST00000511496 LRP4O75096 1905 aa9.53□□□□□ -0.88
LIMCH1-213ENST00000511496 CRIP2P52943 208 aaPredicted RBP9.53□□□□□ -0.88
LIMCH1-213ENST00000511496 FOXC1Q12948 553 aa9.53□□□□□ -0.88
LIMCH1-213ENST00000511496 HES1Q14469 280 aa9.53□□□□□ -0.88
LIMCH1-213ENST00000511496 ZNF714Q96N38 554 aa9.53□□□□□ -0.88
LIMCH1-213ENST00000511496 SPANXA1Q9NS26 97 aa9.53□□□□□ -0.88
LIMCH1-213ENST00000511496 PRUNE2Q8WUY3 3088 aa9.53□□□□□ -0.88
LIMCH1-213ENST00000511496 TRAV8-4A0A0B4J246 113 aa9.53□□□□□ -0.88
LIMCH1-213ENST00000511496 SHISA9B4DS77 424 aa9.53□□□□□ -0.88
LIMCH1-213ENST00000511496 H7C2G1 150 aa9.53□□□□□ -0.88
Retrieved 100 of 20,778 RNA–protein pairs in 35.6 ms