RNA–Protein interactions for RNA: ENST00000498143.5

USP54-216, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 1 (best)

Gene USP54, Length 4,313 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-216ENST00000498143 LINC00477Q96M19 166 aa4.18□□□□□ -1.74
USP54-216ENST00000498143 CRYBG3Q68DQ2 2970 aa4.18□□□□□ -1.74
USP54-216ENST00000498143 TMSB15BA0A087X1C1 80 aa4.18□□□□□ -1.74
USP54-216ENST00000498143 LYNX1G3V0Z9 82 aa4.18□□□□□ -1.74
USP54-216ENST00000498143 RHODO00212 210 aa4.18□□□□□ -1.74
USP54-216ENST00000498143 HMGN4O00479 90 aa4.18□□□□□ -1.74
USP54-216ENST00000498143 LINC00694P0DN24 101 aa4.18□□□□□ -1.74
USP54-216ENST00000498143 LYNX1P0DP58 116 aa4.18□□□□□ -1.74
USP54-216ENST00000498143 CNTFRP26992 372 aa4.18□□□□□ -1.74
USP54-216ENST00000498143 HOXD3P31249 432 aaPredicted RBP4.18□□□□□ -1.74
USP54-216ENST00000498143 RPS4Y2Q8TD47 263 aa4.18□□□□□ -1.74
USP54-216ENST00000498143 GATAD1Q8WUU5 269 aa4.18□□□□□ -1.74
USP54-216ENST00000498143 JPT2Q9H910 190 aa4.18□□□□□ -1.74
USP54-216ENST00000498143 RPUSD1Q9UJJ7 312 aaKnown RBP4.18□□□□□ -1.74
USP54-216ENST00000498143 IGLV3-10A0A075B6K4 115 aa4.18□□□□□ -1.74
USP54-216ENST00000498143 A0A1B0GWA3 101 aa4.18□□□□□ -1.74
USP54-216ENST00000498143 ZNF324O75467 553 aaPredicted RBP4.18□□□□□ -1.74
USP54-216ENST00000498143 SERF1AO75920 110 aa4.18□□□□□ -1.74
USP54-216ENST00000498143 GAPTQ8N292 157 aa4.18□□□□□ -1.74
USP54-216ENST00000498143 C3orf22Q8N5N4 141 aa4.18□□□□□ -1.74
USP54-216ENST00000498143 CLDND2Q8NHS1 167 aa4.18□□□□□ -1.74
USP54-216ENST00000498143 SLC25A38Q96DW6 304 aa4.18□□□□□ -1.74
USP54-216ENST00000498143 SMIM14Q96QK8 99 aa4.18□□□□□ -1.74
USP54-216ENST00000498143 IFI27L2Q9H2X8 130 aa4.18□□□□□ -1.74
USP54-216ENST00000498143 AAMDCQ9H7C9 122 aa4.18□□□□□ -1.74
USP54-216ENST00000498143 DSPPQ9NZW4 1301 aa4.18□□□□□ -1.74
USP54-216ENST00000498143 IGHG3P01860 377 aa4.17□□□□□ -1.74
USP54-216ENST00000498143 IGLC6P0CF74 106 aa4.17□□□□□ -1.74
USP54-216ENST00000498143 TNFAIP6P98066 277 aaPredicted RBP4.17□□□□□ -1.74
USP54-216ENST00000498143 FUT5Q11128 374 aa4.17□□□□□ -1.74
USP54-216ENST00000498143 RNF182Q8N6D2 247 aa4.17□□□□□ -1.74
USP54-216ENST00000498143 TXNDC17Q9BRA2 123 aa4.17□□□□□ -1.74
USP54-216ENST00000498143 C1QTNF5Q9BXJ0 243 aa4.17□□□□□ -1.74
USP54-216ENST00000498143 IMUPQ9GZP8 106 aa4.17□□□□□ -1.74
USP54-216ENST00000498143 SPRR3Q9UBC9 169 aa4.17□□□□□ -1.74
USP54-216ENST00000498143 FFAR1O14842 300 aa4.17□□□□□ -1.74
USP54-216ENST00000498143 IGLL1P15814 213 aa4.17□□□□□ -1.74
USP54-216ENST00000498143 C4orf26Q17RF5 130 aa4.17□□□□□ -1.74
USP54-216ENST00000498143 DYNLRB2Q8TF09 96 aa4.17□□□□□ -1.74
USP54-216ENST00000498143 TMEM54Q969K7 222 aa4.17□□□□□ -1.74
USP54-216ENST00000498143 C16orf92Q96LL3 132 aa4.17□□□□□ -1.74
USP54-216ENST00000498143 CHCHD2Q9Y6H1 151 aaPredicted RBP4.17□□□□□ -1.74
USP54-216ENST00000498143 NBEAL2Q6ZNJ1 2754 aa4.17□□□□□ -1.74
USP54-216ENST00000498143 A0A0B4J2E0 115 aa4.17□□□□□ -1.74
USP54-216ENST00000498143 LOC107986453A0A1B0GWG9 222 aa4.17□□□□□ -1.74
USP54-216ENST00000498143 A0A1B0GX12 115 aa4.17□□□□□ -1.74
USP54-216ENST00000498143 MSGN1A6NI15 193 aa4.17□□□□□ -1.74
USP54-216ENST00000498143 SPINK4O60575 86 aa4.17□□□□□ -1.74
USP54-216ENST00000498143 YPEL1O60688 119 aa4.17□□□□□ -1.74
USP54-216ENST00000498143 BVES-AS1Q5T3Y7 98 aa4.17□□□□□ -1.74
USP54-216ENST00000498143 MRPL2Q5T653 305 aaKnown RBP4.17□□□□□ -1.74
USP54-216ENST00000498143 BRD3OSQ6XYD6 125 aa4.17□□□□□ -1.74
USP54-216ENST00000498143 PFN4Q8NHR9 129 aa4.17□□□□□ -1.74
USP54-216ENST00000498143 LINC01587Q99440 93 aa4.17□□□□□ -1.74
USP54-216ENST00000498143 SDF2L1Q9HCN8 221 aa4.17□□□□□ -1.74
USP54-216ENST00000498143 NUP214P35658 2090 aaPredicted RBP4.17□□□□□ -1.74
USP54-216ENST00000498143 UPK2O00526 184 aa4.17□□□□□ -1.74
USP54-216ENST00000498143 FGF6P10767 208 aa4.17□□□□□ -1.74
USP54-216ENST00000498143 KLF5Q13887 457 aaPredicted RBP4.17□□□□□ -1.74
USP54-216ENST00000498143 GVQW1Q8N7I0 195 aa4.17□□□□□ -1.74
USP54-216ENST00000498143 ZNF519Q8TB69 540 aa4.17□□□□□ -1.74
USP54-216ENST00000498143 AQP3Q92482 292 aa4.17□□□□□ -1.74
USP54-216ENST00000498143 Q96M85 177 aa4.17□□□□□ -1.74
USP54-216ENST00000498143 NRTNQ99748 197 aa4.17□□□□□ -1.74
USP54-216ENST00000498143 TMEM204Q9BSN7 226 aa4.17□□□□□ -1.74
USP54-216ENST00000498143 NPVFQ9HCQ7 196 aa4.17□□□□□ -1.74
USP54-216ENST00000498143 ESM1Q9NQ30 184 aa4.17□□□□□ -1.74
USP54-216ENST00000498143 C15orf62A8K5M9 175 aa4.16□□□□□ -1.74
USP54-216ENST00000498143 SYNGR2O43760 224 aa4.16□□□□□ -1.74
USP54-216ENST00000498143 IGHG1P01857 330 aa4.16□□□□□ -1.74
USP54-216ENST00000498143 ACYP1P07311 99 aa4.16□□□□□ -1.74
USP54-216ENST00000498143 DYNLT3P51808 116 aa4.16□□□□□ -1.74
USP54-216ENST00000498143 UBE2E1P51965 193 aa4.16□□□□□ -1.74
USP54-216ENST00000498143 SP6Q3SY56 376 aa4.16□□□□□ -1.74
USP54-216ENST00000498143 SPANXN5Q5MJ07 72 aa4.16□□□□□ -1.74
USP54-216ENST00000498143 SAXO1Q8IYX7 474 aa4.16□□□□□ -1.74
USP54-216ENST00000498143 SLC25A2Q9BXI2 301 aa4.16□□□□□ -1.74
USP54-216ENST00000498143 PSENENQ9NZ42 101 aa4.16□□□□□ -1.74
USP54-216ENST00000498143 C11orf94C9JXX5 98 aa4.16□□□□□ -1.74
USP54-216ENST00000498143 COA6Q5JTJ3 125 aaKnown RBP4.16□□□□□ -1.74
USP54-216ENST00000498143 CYP2G1PQ6ZSU1 146 aa4.16□□□□□ -1.74
USP54-216ENST00000498143 PRR13Q9NZ81 148 aa4.16□□□□□ -1.74
USP54-216ENST00000498143 MYLKQ15746 1914 aa4.16□□□□□ -1.74
USP54-216ENST00000498143 PTPRBP23467 1997 aa4.16□□□□□ -1.74
USP54-216ENST00000498143 DEFB108AA8MXU0 73 aa4.16□□□□□ -1.74
USP54-216ENST00000498143 RPL36A-HNRNPH2H7BZ11 118 aa4.16□□□□□ -1.74
USP54-216ENST00000498143 DNAL4O96015 105 aa4.16□□□□□ -1.74
USP54-216ENST00000498143 NGFP01138 241 aa4.16□□□□□ -1.74
USP54-216ENST00000498143 ERVK11-1P61568 191 aa4.16□□□□□ -1.74
USP54-216ENST00000498143 PLGLAQ15195 96 aa4.16□□□□□ -1.74
USP54-216ENST00000498143 DUSP5Q16690 384 aa4.16□□□□□ -1.74
USP54-216ENST00000498143 C5orf24Q7Z6I8 188 aa4.16□□□□□ -1.74
USP54-216ENST00000498143 OR8A1Q8NGG7 326 aa4.16□□□□□ -1.74
USP54-216ENST00000498143 GLIPR2Q9H4G4 154 aa4.16□□□□□ -1.74
USP54-216ENST00000498143 TSC2P49815 1807 aa4.16□□□□□ -1.74
USP54-216ENST00000498143 TRBV20OR9-2A0A075B6H5 130 aa4.15□□□□□ -1.74
USP54-216ENST00000498143 FAM236AA0A1B0GUQ0 79 aa4.15□□□□□ -1.74
USP54-216ENST00000498143 FAM236BA0A1B0GV22 79 aa4.15□□□□□ -1.74
USP54-216ENST00000498143 A8MWL6 223 aa4.15□□□□□ -1.74
USP54-216ENST00000498143 LGALS1P09382 135 aaKnown RBP4.15□□□□□ -1.74
Retrieved 100 of 20,778 RNA–protein pairs in 49.5 ms