RNA–Protein interactions for RNA: ENST00000495090.6

SYNE1-230, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best) BASIC

Gene SYNE1, Length 1,907 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-230ENST00000495090 WI2-2373I1.2A0A1W2PRP0 233 aa7.65□□□□□ -1.18
SYNE1-230ENST00000495090 MBD3L4A6NDZ8 208 aaPredicted RBP7.65□□□□□ -1.18
SYNE1-230ENST00000495090 MBD3L3A6NE82 208 aaPredicted RBP7.65□□□□□ -1.18
SYNE1-230ENST00000495090 MBD3L5A6NJ08 208 aaPredicted RBP7.65□□□□□ -1.18
SYNE1-230ENST00000495090 LAMTOR5O43504 91 aa7.65□□□□□ -1.18
SYNE1-230ENST00000495090 ZNF207O43670 478 aaKnown RBP7.65□□□□□ -1.18
SYNE1-230ENST00000495090 CEACAM4O75871 244 aa7.65□□□□□ -1.18
SYNE1-230ENST00000495090 AZU1P20160 251 aa7.65□□□□□ -1.18
SYNE1-230ENST00000495090 FCGR2BP31994 310 aaPredicted RBP7.65□□□□□ -1.18
SYNE1-230ENST00000495090 PDE6HQ13956 83 aa7.65□□□□□ -1.18
SYNE1-230ENST00000495090 HES3Q5TGS1 186 aa7.65□□□□□ -1.18
SYNE1-230ENST00000495090 LYZL1Q6UWQ5 148 aa7.65□□□□□ -1.18
SYNE1-230ENST00000495090 Q71RC1 249 aaPredicted RBP7.65□□□□□ -1.18
SYNE1-230ENST00000495090 AMN1Q8IY45 258 aa7.65□□□□□ -1.18
SYNE1-230ENST00000495090 BCL6BQ8N143 479 aaPredicted RBP7.65□□□□□ -1.18
SYNE1-230ENST00000495090 MBD3L2Q8NHZ7 208 aaPredicted RBP7.65□□□□□ -1.18
SYNE1-230ENST00000495090 SPATA25Q9BR10 227 aa7.65□□□□□ -1.18
SYNE1-230ENST00000495090 SRSF8Q9BRL6 282 aaKnown RBP7.65□□□□□ -1.18
SYNE1-230ENST00000495090 E9PLD3 99 aa7.64□□□□□ -1.19
SYNE1-230ENST00000495090 NKX2-8O15522 239 aa7.64□□□□□ -1.19
SYNE1-230ENST00000495090 EVI2AP22794 236 aa7.64□□□□□ -1.19
SYNE1-230ENST00000495090 FXYD2P54710 66 aa7.64□□□□□ -1.19
SYNE1-230ENST00000495090 RPL24P83731 157 aaKnown RBP7.64□□□□□ -1.19
SYNE1-230ENST00000495090 SRSF2Q01130 221 aaKnown RBP7.64□□□□□ -1.19
SYNE1-230ENST00000495090 DIAPH2-AS1Q14236 149 aa7.64□□□□□ -1.19
SYNE1-230ENST00000495090 PLGLAQ15195 96 aa7.64□□□□□ -1.19
SYNE1-230ENST00000495090 TAL2Q16559 108 aa7.64□□□□□ -1.19
SYNE1-230ENST00000495090 S100A7AQ86SG5 101 aa7.64□□□□□ -1.19
SYNE1-230ENST00000495090 RASL11BQ9BPW5 248 aa7.64□□□□□ -1.19
SYNE1-230ENST00000495090 CHAC1Q9BUX1 264 aa7.64□□□□□ -1.19
SYNE1-230ENST00000495090 HEATR1Q9H583 2144 aaKnown RBP7.64□□□□□ -1.19
SYNE1-230ENST00000495090 FRYQ5TBA9 3013 aa7.64□□□□□ -1.19
SYNE1-230ENST00000495090 NAV3Q8IVL0 2385 aa7.64□□□□□ -1.19
SYNE1-230ENST00000495090 PPIAL4EA0A075B759 164 aa7.64□□□□□ -1.19
SYNE1-230ENST00000495090 TMEM213A2RRL7 107 aa7.64□□□□□ -1.19
SYNE1-230ENST00000495090 TEX22C9J3V5 150 aa7.64□□□□□ -1.19
SYNE1-230ENST00000495090 I3L2K1 104 aa7.64□□□□□ -1.19
SYNE1-230ENST00000495090 MRPS12O15235 138 aaKnown RBP7.64□□□□□ -1.19
SYNE1-230ENST00000495090 GNG7O60262 68 aa7.64□□□□□ -1.19
SYNE1-230ENST00000495090 PPIAL4FP0DN26 164 aa7.64□□□□□ -1.19
SYNE1-230ENST00000495090 GCSHP23434 173 aa7.64□□□□□ -1.19
SYNE1-230ENST00000495090 IGFL2Q6UWQ7 119 aa7.64□□□□□ -1.19
SYNE1-230ENST00000495090 DHRS13Q6UX07 377 aa7.64□□□□□ -1.19
SYNE1-230ENST00000495090 TMEM133Q9H2Q1 129 aa7.64□□□□□ -1.19
SYNE1-230ENST00000495090 SPANXB1Q9NS25 103 aaPredicted RBP7.64□□□□□ -1.19
SYNE1-230ENST00000495090 HHLA3Q9XRX5 114 aa7.64□□□□□ -1.19
SYNE1-230ENST00000495090 SIGLEC9Q9Y336 463 aa7.64□□□□□ -1.19
SYNE1-230ENST00000495090 AHCTF1Q8WYP5 2266 aa7.64□□□□□ -1.19
SYNE1-230ENST00000495090 GAGE12HA6NDE8 117 aa7.63□□□□□ -1.19
SYNE1-230ENST00000495090 NPYP01303 97 aa7.63□□□□□ -1.19
SYNE1-230ENST00000495090 IGKV1-17P01599 117 aa7.63□□□□□ -1.19
SYNE1-230ENST00000495090 CKS2P33552 79 aa7.63□□□□□ -1.19
SYNE1-230ENST00000495090 DLX6P56179 175 aa7.63□□□□□ -1.19
SYNE1-230ENST00000495090 CEND1Q8N111 149 aa7.63□□□□□ -1.19
SYNE1-230ENST00000495090 NUP37Q8NFH4 326 aa7.63□□□□□ -1.19
SYNE1-230ENST00000495090 TPPP3Q9BW30 176 aa7.63□□□□□ -1.19
SYNE1-230ENST00000495090 MAP1LC3AQ9H492 121 aa7.63□□□□□ -1.19
SYNE1-230ENST00000495090 DKK2Q9UBU2 259 aa7.63□□□□□ -1.19
SYNE1-230ENST00000495090 TRAV17A0A0B4J275 112 aa7.62□□□□□ -1.19
SYNE1-230ENST00000495090 SH2D1AO60880 128 aa7.62□□□□□ -1.19
SYNE1-230ENST00000495090 ATP5LO75964 103 aa7.62□□□□□ -1.19
SYNE1-230ENST00000495090 WT1P19544 449 aaPredicted RBP7.62□□□□□ -1.19
SYNE1-230ENST00000495090 FCER1GP30273 86 aa7.62□□□□□ -1.19
SYNE1-230ENST00000495090 ATP1A1-AS1Q5TC04 95 aa7.62□□□□□ -1.19
SYNE1-230ENST00000495090 ZNF562Q6V9R5 426 aa7.62□□□□□ -1.19
SYNE1-230ENST00000495090 ASCL5Q7RTU5 278 aa7.62□□□□□ -1.19
SYNE1-230ENST00000495090 ATP6V0BQ99437 205 aa7.62□□□□□ -1.19
SYNE1-230ENST00000495090 CNFNQ9BYD5 112 aa7.62□□□□□ -1.19
SYNE1-230ENST00000495090 NXT2Q9NPJ8 142 aaKnown RBP7.62□□□□□ -1.19
SYNE1-230ENST00000495090 TRBV25-1A0A075B6N4 114 aa7.62□□□□□ -1.19
SYNE1-230ENST00000495090 A0A1W2PRD5 423 aa7.62□□□□□ -1.19
SYNE1-230ENST00000495090 A0A1W2PRF3 423 aa7.62□□□□□ -1.19
SYNE1-230ENST00000495090 A0A1W2PRM7 423 aa7.62□□□□□ -1.19
SYNE1-230ENST00000495090 TNFRSF13BO14836 293 aaPredicted RBP7.62□□□□□ -1.19
SYNE1-230ENST00000495090 FCN3O75636 299 aa7.62□□□□□ -1.19
SYNE1-230ENST00000495090 IGKCP01834 107 aa7.62□□□□□ -1.19
SYNE1-230ENST00000495090 IGLC6P0CF74 106 aa7.62□□□□□ -1.19
SYNE1-230ENST00000495090 TCTEX1D4Q5JR98 221 aa7.62□□□□□ -1.19
SYNE1-230ENST00000495090 ZNF474Q6S9Z5 364 aaPredicted RBP7.62□□□□□ -1.19
SYNE1-230ENST00000495090 SEM1Q6ZVN7 128 aa7.62□□□□□ -1.19
SYNE1-230ENST00000495090 ZNF502Q8TBZ5 544 aa7.62□□□□□ -1.19
SYNE1-230ENST00000495090 C8orf49Q96NF6 230 aa7.62□□□□□ -1.19
SYNE1-230ENST00000495090 GTSF1LQ9H1H1 148 aa7.62□□□□□ -1.19
SYNE1-230ENST00000495090 AAMDCQ9H7C9 122 aa7.62□□□□□ -1.19
SYNE1-230ENST00000495090 IGKV2D-26A0A0A0MRZ7 120 aa7.61□□□□□ -1.19
SYNE1-230ENST00000495090 IGHV3-21A0A0B4J1V1 117 aa7.61□□□□□ -1.19
SYNE1-230ENST00000495090 NDUFB3O43676 98 aa7.61□□□□□ -1.19
SYNE1-230ENST00000495090 SRSF6Q13247 344 aaKnown RBP7.61□□□□□ -1.19
SYNE1-230ENST00000495090 TMEM155Q4W5P6 130 aa7.61□□□□□ -1.19
SYNE1-230ENST00000495090 PPP1R27Q86WC6 154 aa7.61□□□□□ -1.19
SYNE1-230ENST00000495090 C17orf77Q96MU5 243 aa7.61□□□□□ -1.19
SYNE1-230ENST00000495090 TSSC4Q9Y5U2 329 aaPredicted RBP7.61□□□□□ -1.19
SYNE1-230ENST00000495090 SELENOKQ9Y6D0 94 aa7.61□□□□□ -1.19
SYNE1-230ENST00000495090 IGLL5B9A064 214 aa7.6□□□□□ -1.19
SYNE1-230ENST00000495090 LINC01619G3V211 115 aa7.6□□□□□ -1.19
SYNE1-230ENST00000495090 ENSAO43768 121 aaKnown RBP7.6□□□□□ -1.19
SYNE1-230ENST00000495090 DPM2O94777 84 aa7.6□□□□□ -1.19
SYNE1-230ENST00000495090 RBP4P02753 201 aa7.6□□□□□ -1.19
SYNE1-230ENST00000495090 IGHV1-8P0DP01 117 aa7.6□□□□□ -1.19
SYNE1-230ENST00000495090 SMAGPQ0VAQ4 97 aa7.6□□□□□ -1.19
Retrieved 100 of 20,778 RNA–protein pairs in 56 ms