RNA–Protein interactions for RNA: ENST00000489573.5

SMC4-221, Transcript of structural maintenance of chromosomes 4, humanhuman

TSL 1 (best)

Gene SMC4, Length 1,553 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMC4-221ENST00000489573 ELOVL1Q9BW60 279 aa16.51■□□□□ 0.23
SMC4-221ENST00000489573 Q9H3A6 140 aa16.51■□□□□ 0.23
SMC4-221ENST00000489573 SMAD5-AS1Q9Y6J3 95 aa16.51■□□□□ 0.23
SMC4-221ENST00000489573 A0A087X0K7 114 aa16.51■□□□□ 0.23
SMC4-221ENST00000489573 RPUSD4Q96CM3 377 aaKnown RBP16.51■□□□□ 0.23
SMC4-221ENST00000489573 OTORQ9NRC9 128 aa16.51■□□□□ 0.23
SMC4-221ENST00000489573 A0A1W2PRX2 142 aa16.5■□□□□ 0.23
SMC4-221ENST00000489573 SLURP1P55000 103 aa16.5■□□□□ 0.23
SMC4-221ENST00000489573 KLF5Q13887 457 aaPredicted RBP16.5■□□□□ 0.23
SMC4-221ENST00000489573 LYPD1Q8N2G4 141 aa16.5■□□□□ 0.23
SMC4-221ENST00000489573 TCEAL7Q9BRU2 100 aa16.5■□□□□ 0.23
SMC4-221ENST00000489573 PARLQ9H300 379 aa16.5■□□□□ 0.23
SMC4-221ENST00000489573 SMPXQ9UHP9 88 aa16.5■□□□□ 0.23
SMC4-221ENST00000489573 TMEM213A2RRL7 107 aa16.49■□□□□ 0.23
SMC4-221ENST00000489573 PGPA6NDG6 321 aa16.49■□□□□ 0.23
SMC4-221ENST00000489573 ZNF785A8K8V0 405 aa16.49■□□□□ 0.23
SMC4-221ENST00000489573 SLC17A3O00476 420 aa16.49■□□□□ 0.23
SMC4-221ENST00000489573 GUCA2BQ16661 112 aa16.49■□□□□ 0.23
SMC4-221ENST00000489573 SIGLEC15Q6ZMC9 328 aa16.49■□□□□ 0.23
SMC4-221ENST00000489573 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP16.49■□□□□ 0.23
SMC4-221ENST00000489573 RHPN1-AS1Q9BWJ2 59 aa16.49■□□□□ 0.23
SMC4-221ENST00000489573 ZNF253O75346 499 aa16.48■□□□□ 0.23
SMC4-221ENST00000489573 SLC25A5P05141 298 aaKnown RBP16.48■□□□□ 0.23
SMC4-221ENST00000489573 BMI1P35226 326 aa16.48■□□□□ 0.23
SMC4-221ENST00000489573 ZNF674Q2M3X9 581 aa16.48■□□□□ 0.23
SMC4-221ENST00000489573 FAM74A3Q4VXF1 159 aa16.48■□□□□ 0.23
SMC4-221ENST00000489573 SVBPQ8N300 66 aa16.48■□□□□ 0.23
SMC4-221ENST00000489573 DUX3Q96PT4 197 aa16.48■□□□□ 0.23
SMC4-221ENST00000489573 SMIM7Q9BQ49 75 aa16.48■□□□□ 0.23
SMC4-221ENST00000489573 ZNF727A8MUV8 499 aa16.47■□□□□ 0.23
SMC4-221ENST00000489573 CHEK1O14757 476 aa16.47■□□□□ 0.23
SMC4-221ENST00000489573 PSG9Q00887 426 aa16.47■□□□□ 0.23
SMC4-221ENST00000489573 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa16.47■□□□□ 0.23
SMC4-221ENST00000489573 C5orf17Q8NAS9 161 aa16.47■□□□□ 0.23
SMC4-221ENST00000489573 NIPSNAP3BQ9BS92 247 aa16.47■□□□□ 0.23
SMC4-221ENST00000489573 MEOX2P50222 304 aa16.47■□□□□ 0.23
SMC4-221ENST00000489573 EXOC3-AS1Q8N2X6 119 aa16.47■□□□□ 0.23
SMC4-221ENST00000489573 RAX2Q96IS3 184 aa16.47■□□□□ 0.23
SMC4-221ENST00000489573 PEX7O00628 323 aa16.46■□□□□ 0.23
SMC4-221ENST00000489573 EDN2P20800 178 aa16.46■□□□□ 0.23
SMC4-221ENST00000489573 FOXL1Q12952 345 aa16.46■□□□□ 0.23
SMC4-221ENST00000489573 FHL3Q13643 280 aa16.46■□□□□ 0.23
SMC4-221ENST00000489573 HIST1H2BAQ96A08 127 aa16.46■□□□□ 0.23
SMC4-221ENST00000489573 DERL1Q9BUN8 251 aa16.46■□□□□ 0.23
SMC4-221ENST00000489573 AAMDCQ9H7C9 122 aa16.46■□□□□ 0.23
SMC4-221ENST00000489573 EPDR1Q9UM22 224 aa16.46■□□□□ 0.23
SMC4-221ENST00000489573 CMTM2Q8TAZ6 248 aa16.45■□□□□ 0.22
SMC4-221ENST00000489573 C2CD4CQ8TF44 421 aa16.45■□□□□ 0.22
SMC4-221ENST00000489573 HELTA6NFD8 242 aa16.44■□□□□ 0.22
SMC4-221ENST00000489573 C2orf70A6NJV1 201 aa16.44■□□□□ 0.22
SMC4-221ENST00000489573 CCL24O00175 119 aa16.44■□□□□ 0.22
SMC4-221ENST00000489573 SNAPINO95295 136 aa16.44■□□□□ 0.22
SMC4-221ENST00000489573 AKR1C3P42330 323 aa16.44■□□□□ 0.22
SMC4-221ENST00000489573 KRTAP10-3P60369 221 aa16.44■□□□□ 0.22
SMC4-221ENST00000489573 GNG5P63218 68 aa16.44■□□□□ 0.22
SMC4-221ENST00000489573 SLC50A1Q9BRV3 221 aa16.44■□□□□ 0.22
SMC4-221ENST00000489573 ZNF331Q9NQX6 463 aaPredicted RBP16.44■□□□□ 0.22
SMC4-221ENST00000489573 PEMTQ9UBM1 199 aa16.44■□□□□ 0.22
SMC4-221ENST00000489573 DLX4Q92988 240 aaPredicted RBP16.43■□□□□ 0.22
SMC4-221ENST00000489573 TVP23CQ96ET8 276 aa16.43■□□□□ 0.22
SMC4-221ENST00000489573 ATG101Q9BSB4 218 aa16.43■□□□□ 0.22
SMC4-221ENST00000489573 NAT8Q9UHE5 227 aa16.43■□□□□ 0.22
SMC4-221ENST00000489573 RPH3ALQ9UNE2 315 aa16.43■□□□□ 0.22
SMC4-221ENST00000489573 ADARB2-AS1A8MUL3 147 aa16.43■□□□□ 0.22
SMC4-221ENST00000489573 OR9G4Q8NGQ1 327 aa16.43■□□□□ 0.22
SMC4-221ENST00000489573 M0QZ24 198 aa16.42■□□□□ 0.22
SMC4-221ENST00000489573 TCRAP04437 139 aa16.42■□□□□ 0.22
SMC4-221ENST00000489573 CBLN1P23435 193 aa16.42■□□□□ 0.22
SMC4-221ENST00000489573 RPL35P42766 123 aaKnown RBP16.42■□□□□ 0.22
SMC4-221ENST00000489573 TMEM241Q24JQ0 296 aa16.42■□□□□ 0.22
SMC4-221ENST00000489573 NDUFA11Q86Y39 141 aa16.42■□□□□ 0.22
SMC4-221ENST00000489573 CLRN3Q8NCR9 226 aa16.42■□□□□ 0.22
SMC4-221ENST00000489573 M0R036 132 aa16.41■□□□□ 0.22
SMC4-221ENST00000489573 FOLR2P14207 255 aa16.41■□□□□ 0.22
SMC4-221ENST00000489573 CNN1P51911 297 aaKnown RBP16.41■□□□□ 0.22
SMC4-221ENST00000489573 TCF24Q7RTU0 167 aa16.41■□□□□ 0.22
SMC4-221ENST00000489573 SDF2L1Q9HCN8 221 aa16.41■□□□□ 0.22
SMC4-221ENST00000489573 RPL11P62913 178 aaKnown RBP16.4■□□□□ 0.22
SMC4-221ENST00000489573 PNRC1Q12796 327 aaPredicted RBP16.4■□□□□ 0.22
SMC4-221ENST00000489573 NSUN5P1Q3KNT7 163 aa16.4■□□□□ 0.22
SMC4-221ENST00000489573 ATRAIDQ6UW56 229 aa16.4■□□□□ 0.22
SMC4-221ENST00000489573 C9JCJ5 164 aa16.39■□□□□ 0.21
SMC4-221ENST00000489573 M0R3E3 92 aa16.39■□□□□ 0.21
SMC4-221ENST00000489573 CSN1S1P47710 185 aa16.39■□□□□ 0.21
SMC4-221ENST00000489573 KRTAP21-3Q3LHN1 58 aa16.39■□□□□ 0.21
SMC4-221ENST00000489573 AWAT1Q58HT5 328 aa16.39■□□□□ 0.21
SMC4-221ENST00000489573 NRN1Q9NPD7 142 aa16.39■□□□□ 0.21
SMC4-221ENST00000489573 TRBV20OR9-2A0A075B6H5 130 aa16.38■□□□□ 0.21
SMC4-221ENST00000489573 TAS2R60P59551 318 aa16.38■□□□□ 0.21
SMC4-221ENST00000489573 IGFL4Q6B9Z1 124 aa16.38■□□□□ 0.21
SMC4-221ENST00000489573 ARL6IP6Q8N6S5 226 aa16.38■□□□□ 0.21
SMC4-221ENST00000489573 LINC00479Q96M42 142 aa16.38■□□□□ 0.21
SMC4-221ENST00000489573 PRELID1Q9Y255 219 aa16.38■□□□□ 0.21
SMC4-221ENST00000489573 TRAV8-2A0A0B4J237 113 aa16.38■□□□□ 0.21
SMC4-221ENST00000489573 HLA-DMBP28068 263 aa16.38■□□□□ 0.21
SMC4-221ENST00000489573 CENPWQ5EE01 88 aa16.38■□□□□ 0.21
SMC4-221ENST00000489573 ADAMTSL5Q6ZMM2 481 aa16.38■□□□□ 0.21
SMC4-221ENST00000489573 GOLT1AQ6ZVE7 132 aa16.38■□□□□ 0.21
SMC4-221ENST00000489573 C16orf92Q96LL3 132 aa16.38■□□□□ 0.21
SMC4-221ENST00000489573 CLEC5AQ9NY25 188 aa16.38■□□□□ 0.21
Retrieved 100 of 20,778 RNA–protein pairs in 25.9 ms