RNA–Protein interactions for RNA: ENST00000489403.1

CPSF3-204, Transcript of cleavage and polyadenylation specific factor 3, humanhuman

TSL 5

Gene CPSF3, Length 688 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF3-204ENST00000489403 LINC01587Q99440 93 aa8.67□□□□□ -1.02
CPSF3-204ENST00000489403 PSENENQ9NZ42 101 aa8.67□□□□□ -1.02
CPSF3-204ENST00000489403 LINC00588Q9Y4M8 146 aa8.67□□□□□ -1.02
CPSF3-204ENST00000489403 CBY3A6NI87 242 aa8.66□□□□□ -1.02
CPSF3-204ENST00000489403 MRPS12O15235 138 aaKnown RBP8.66□□□□□ -1.02
CPSF3-204ENST00000489403 OR5G3P0C626 314 aa8.66□□□□□ -1.02
CPSF3-204ENST00000489403 RRAS2P62070 204 aaPredicted RBP8.66□□□□□ -1.02
CPSF3-204ENST00000489403 PSG3Q16557 428 aa8.66□□□□□ -1.02
CPSF3-204ENST00000489403 TIMM8BQ9Y5J9 83 aaPredicted RBP8.66□□□□□ -1.02
CPSF3-204ENST00000489403 C9orf170A2RU37 121 aa8.65□□□□□ -1.02
CPSF3-204ENST00000489403 SSSCA1O60232 199 aa8.65□□□□□ -1.02
CPSF3-204ENST00000489403 CDK2AP2O75956 126 aa8.65□□□□□ -1.02
CPSF3-204ENST00000489403 HTN1P15515 57 aa8.65□□□□□ -1.02
CPSF3-204ENST00000489403 CDKN1BP46527 198 aa8.65□□□□□ -1.02
CPSF3-204ENST00000489403 CCL18P55774 89 aa8.65□□□□□ -1.02
CPSF3-204ENST00000489403 UBE2MP61081 183 aaKnown RBP8.65□□□□□ -1.02
CPSF3-204ENST00000489403 SELENOTP62341 195 aa8.65□□□□□ -1.02
CPSF3-204ENST00000489403 DLK1P80370 383 aa8.65□□□□□ -1.02
CPSF3-204ENST00000489403 PATE2Q6UY27 113 aa8.65□□□□□ -1.02
CPSF3-204ENST00000489403 RNASE8Q8TDE3 154 aaKnown RBP8.65□□□□□ -1.02
CPSF3-204ENST00000489403 ARL6Q9H0F7 186 aa8.65□□□□□ -1.02
CPSF3-204ENST00000489403 PPP1R14DQ9NXH3 145 aa8.65□□□□□ -1.02
CPSF3-204ENST00000489403 METTL15P1P0C7V9 234 aa8.64□□□□□ -1.03
CPSF3-204ENST00000489403 SLC38A11Q08AI6 406 aa8.64□□□□□ -1.03
CPSF3-204ENST00000489403 TMEM14EPQ6UXP3 125 aa8.64□□□□□ -1.03
CPSF3-204ENST00000489403 LRRC20Q8TCA0 184 aa8.64□□□□□ -1.03
CPSF3-204ENST00000489403 TMEM263Q8WUH6 116 aaKnown RBP8.64□□□□□ -1.03
CPSF3-204ENST00000489403 RPUSD4Q96CM3 377 aaKnown RBP8.64□□□□□ -1.03
CPSF3-204ENST00000489403 SMIM8Q96KF7 97 aa8.64□□□□□ -1.03
CPSF3-204ENST00000489403 ARV1Q9H2C2 271 aa8.64□□□□□ -1.03
CPSF3-204ENST00000489403 NPVFQ9HCQ7 196 aa8.64□□□□□ -1.03
CPSF3-204ENST00000489403 NOP10Q9NPE3 64 aaKnown RBP8.64□□□□□ -1.03
CPSF3-204ENST00000489403 APOBP04114 4563 aaKnown RBP8.64□□□□□ -1.03
CPSF3-204ENST00000489403 FNDC10F2Z333 226 aa8.63□□□□□ -1.03
CPSF3-204ENST00000489403 K7EPK0 472 aa8.63□□□□□ -1.03
CPSF3-204ENST00000489403 SNRPCP09234 159 aaKnown RBP8.63□□□□□ -1.03
CPSF3-204ENST00000489403 CXCL2P19875 107 aa8.63□□□□□ -1.03
CPSF3-204ENST00000489403 CLINT1Q14677 625 aa8.63□□□□□ -1.03
CPSF3-204ENST00000489403 KIR3DS1Q14943 382 aa8.63□□□□□ -1.03
CPSF3-204ENST00000489403 SSX7Q7RTT5 188 aa8.63□□□□□ -1.03
CPSF3-204ENST00000489403 S100A7AQ86SG5 101 aa8.63□□□□□ -1.03
CPSF3-204ENST00000489403 CCDC190Q86UF4 302 aa8.63□□□□□ -1.03
CPSF3-204ENST00000489403 PARD6GQ9BYG4 376 aaPredicted RBP8.63□□□□□ -1.03
CPSF3-204ENST00000489403 ZNF331Q9NQX6 463 aaPredicted RBP8.63□□□□□ -1.03
CPSF3-204ENST00000489403 FLVCR2Q9UPI3 526 aa8.63□□□□□ -1.03
CPSF3-204ENST00000489403 H7BYZ3 331 aa8.62□□□□□ -1.03
CPSF3-204ENST00000489403 ANXA7P20073 488 aaKnown RBP8.62□□□□□ -1.03
CPSF3-204ENST00000489403 TEPPQ6URK8 271 aa8.62□□□□□ -1.03
CPSF3-204ENST00000489403 LCN15Q6UWW0 184 aa8.62□□□□□ -1.03
CPSF3-204ENST00000489403 ZNF493Q6ZR52 646 aa8.62□□□□□ -1.03
CPSF3-204ENST00000489403 LINC00612Q8N6U2 182 aa8.62□□□□□ -1.03
CPSF3-204ENST00000489403 MAPKAPK5-AS1Q8N8E1 139 aa8.62□□□□□ -1.03
CPSF3-204ENST00000489403 OR10P1Q8NGE3 313 aa8.62□□□□□ -1.03
CPSF3-204ENST00000489403 C20orf144Q9BQM9 153 aa8.62□□□□□ -1.03
CPSF3-204ENST00000489403 SLC50A1Q9BRV3 221 aa8.62□□□□□ -1.03
CPSF3-204ENST00000489403 KRTAP1-5Q9BYS1 174 aa8.62□□□□□ -1.03
CPSF3-204ENST00000489403 MGAT4CQ9UBM8 478 aa8.62□□□□□ -1.03
CPSF3-204ENST00000489403 NDUFB6O95139 128 aa8.61□□□□□ -1.03
CPSF3-204ENST00000489403 SCGB1D2O95969 90 aa8.61□□□□□ -1.03
CPSF3-204ENST00000489403 OR4E1P0C645 316 aa8.61□□□□□ -1.03
CPSF3-204ENST00000489403 S100A5P33763 92 aa8.61□□□□□ -1.03
CPSF3-204ENST00000489403 ARL16Q0P5N6 197 aa8.61□□□□□ -1.03
CPSF3-204ENST00000489403 PXDC1Q5TGL8 231 aa8.61□□□□□ -1.03
CPSF3-204ENST00000489403 GFI1BQ5VTD9 330 aa8.61□□□□□ -1.03
CPSF3-204ENST00000489403 MORN5Q5VZ52 161 aa8.61□□□□□ -1.03
CPSF3-204ENST00000489403 LINC00305Q7Z4B0 112 aa8.61□□□□□ -1.03
CPSF3-204ENST00000489403 OR10J6PQ8NGY7 276 aa8.61□□□□□ -1.03
CPSF3-204ENST00000489403 GNPNAT1Q96EK6 184 aaPredicted RBP8.61□□□□□ -1.03
CPSF3-204ENST00000489403 SRRQ9GZT4 340 aa8.61□□□□□ -1.03
CPSF3-204ENST00000489403 Q9H8V8 135 aa8.61□□□□□ -1.03
CPSF3-204ENST00000489403 RNF24Q9Y225 148 aa8.61□□□□□ -1.03
CPSF3-204ENST00000489403 RCL1Q9Y2P8 373 aaKnown RBP8.61□□□□□ -1.03
CPSF3-204ENST00000489403 DNAH5Q8TE73 4624 aa8.61□□□□□ -1.03
CPSF3-204ENST00000489403 TRAV26-1A0A087WT03 109 aa8.6□□□□□ -1.03
CPSF3-204ENST00000489403 A0A0J9YY99 117 aa8.6□□□□□ -1.03
CPSF3-204ENST00000489403 PRAC2D3DTV9 90 aa8.6□□□□□ -1.03
CPSF3-204ENST00000489403 SLC17A3O00476 420 aa8.6□□□□□ -1.03
CPSF3-204ENST00000489403 AGPAT2O15120 278 aa8.6□□□□□ -1.03
CPSF3-204ENST00000489403 TSC22D2O75157 780 aa8.6□□□□□ -1.03
CPSF3-204ENST00000489403 M6PRP20645 277 aa8.6□□□□□ -1.03
CPSF3-204ENST00000489403 HOXA5P20719 270 aa8.6□□□□□ -1.03
CPSF3-204ENST00000489403 OR5I1Q13606 314 aa8.6□□□□□ -1.03
CPSF3-204ENST00000489403 IAH1Q2TAA2 248 aaPredicted RBP8.6□□□□□ -1.03
CPSF3-204ENST00000489403 SPATA12Q7Z6I5 190 aa8.6□□□□□ -1.03
CPSF3-204ENST00000489403 ZNF546Q86UE3 836 aa8.6□□□□□ -1.03
CPSF3-204ENST00000489403 BPIFA4PQ86YQ2 179 aa8.6□□□□□ -1.03
CPSF3-204ENST00000489403 ZBTB8BQ8NAP8 495 aaPredicted RBP8.6□□□□□ -1.03
CPSF3-204ENST00000489403 RXFP4Q8TDU9 374 aa8.6□□□□□ -1.03
CPSF3-204ENST00000489403 GAGE12BA1L429 117 aa8.59□□□□□ -1.03
CPSF3-204ENST00000489403 NAP1L6A6NFF2 107 aa8.59□□□□□ -1.03
CPSF3-204ENST00000489403 H3BTX0 84 aa8.59□□□□□ -1.03
CPSF3-204ENST00000489403 ZNF701M0R085 212 aaPredicted RBP8.59□□□□□ -1.03
CPSF3-204ENST00000489403 GOSR2O14653 212 aa8.59□□□□□ -1.03
CPSF3-204ENST00000489403 GAGE7O76087 117 aa8.59□□□□□ -1.03
CPSF3-204ENST00000489403 GAGE12FP0CL80 117 aa8.59□□□□□ -1.03
CPSF3-204ENST00000489403 GAGE12GP0CL81 117 aa8.59□□□□□ -1.03
CPSF3-204ENST00000489403 GAGE12IP0CL82 117 aa8.59□□□□□ -1.03
CPSF3-204ENST00000489403 TAS2R30P59541 319 aa8.59□□□□□ -1.03
CPSF3-204ENST00000489403 BAK1Q16611 211 aa8.59□□□□□ -1.03
CPSF3-204ENST00000489403 TTC32Q5I0X7 151 aa8.59□□□□□ -1.03
Retrieved 100 of 20,778 RNA–protein pairs in 111.9 ms