RNA–Protein interactions for RNA: ENST00000487880.2

USP48-209, Transcript of ubiquitin specific peptidase 48, humanhuman

TSL 3

Gene USP48, Length 524 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-209ENST00000487880 OVOL1O14753 267 aa1.9□□□□□ -2.11
USP48-209ENST00000487880 PIN1P1O15428 100 aa1.9□□□□□ -2.11
USP48-209ENST00000487880 CYB5BO43169 146 aa1.9□□□□□ -2.11
USP48-209ENST00000487880 CD3DP04234 171 aa1.9□□□□□ -2.11
USP48-209ENST00000487880 SRP19P09132 144 aaKnown RBP1.9□□□□□ -2.11
USP48-209ENST00000487880 CXCL1P09341 107 aa1.9□□□□□ -2.11
USP48-209ENST00000487880 SMIM17P0DL12 118 aa1.9□□□□□ -2.11
USP48-209ENST00000487880 RPL12P30050 165 aaKnown RBP1.9□□□□□ -2.11
USP48-209ENST00000487880 SRP14P37108 136 aaKnown RBP1.9□□□□□ -2.11
USP48-209ENST00000487880 TAS2R41P59536 307 aa1.9□□□□□ -2.11
USP48-209ENST00000487880 MAXP61244 160 aa1.9□□□□□ -2.11
USP48-209ENST00000487880 HLA-DRB3P79483 266 aa1.9□□□□□ -2.11
USP48-209ENST00000487880 PPP1R1AQ13522 171 aa1.9□□□□□ -2.11
USP48-209ENST00000487880 INSL4Q14641 139 aa1.9□□□□□ -2.11
USP48-209ENST00000487880 SMIM21Q3B7S5 101 aa1.9□□□□□ -2.11
USP48-209ENST00000487880 KRTAP13-4Q3LI77 160 aa1.9□□□□□ -2.11
USP48-209ENST00000487880 OCIAD2Q56VL3 154 aa1.9□□□□□ -2.11
USP48-209ENST00000487880 DNM1P34Q6PK57 102 aa1.9□□□□□ -2.11
USP48-209ENST00000487880 ZNF705AQ6ZN79 300 aaPredicted RBP1.9□□□□□ -2.11
USP48-209ENST00000487880 TMEM156Q8N614 296 aa1.9□□□□□ -2.11
USP48-209ENST00000487880 OR51D1Q8NGF3 324 aa1.9□□□□□ -2.11
USP48-209ENST00000487880 OR5D18Q8NGL1 313 aa1.9□□□□□ -2.11
USP48-209ENST00000487880 OR5L1Q8NGL2 311 aa1.9□□□□□ -2.11
USP48-209ENST00000487880 OR4X1Q8NH49 305 aa1.9□□□□□ -2.11
USP48-209ENST00000487880 C11orf40Q8WZ69 217 aa1.9□□□□□ -2.11
USP48-209ENST00000487880 CPNE2Q96FN4 548 aaPredicted RBP1.9□□□□□ -2.11
USP48-209ENST00000487880 ABHD14BQ96IU4 210 aa1.9□□□□□ -2.11
USP48-209ENST00000487880 TMEM56Q96MV1 263 aa1.9□□□□□ -2.11
USP48-209ENST00000487880 LYSMD1Q96S90 227 aa1.9□□□□□ -2.11
USP48-209ENST00000487880 PRSS27Q9BQR3 290 aa1.9□□□□□ -2.11
USP48-209ENST00000487880 VPS25Q9BRG1 176 aa1.9□□□□□ -2.11
USP48-209ENST00000487880 EFCAB11Q9BUY7 163 aa1.9□□□□□ -2.11
USP48-209ENST00000487880 EBPLQ9BY08 206 aa1.9□□□□□ -2.11
USP48-209ENST00000487880 PARD6GQ9BYG4 376 aaPredicted RBP1.9□□□□□ -2.11
USP48-209ENST00000487880 MAP1LC3BQ9GZQ8 125 aa1.9□□□□□ -2.11
USP48-209ENST00000487880 EIF5A2Q9GZV4 153 aaKnown RBP1.9□□□□□ -2.11
USP48-209ENST00000487880 CHST6Q9GZX3 395 aa1.9□□□□□ -2.11
USP48-209ENST00000487880 SPANXA1Q9NS26 97 aa1.9□□□□□ -2.11
USP48-209ENST00000487880 CBLN4Q9NTU7 201 aa1.9□□□□□ -2.11
USP48-209ENST00000487880 BET1LQ9NYM9 111 aa1.9□□□□□ -2.11
USP48-209ENST00000487880 GSKIPQ9P0R6 139 aa1.9□□□□□ -2.11
USP48-209ENST00000487880 UQCR10Q9UDW1 63 aa1.9□□□□□ -2.11
USP48-209ENST00000487880 ANAPC10Q9UM13 185 aa1.9□□□□□ -2.11
USP48-209ENST00000487880 CCL26Q9Y258 94 aa1.9□□□□□ -2.11
USP48-209ENST00000487880 TMEM56-RWDD3S4R434 201 aa1.9□□□□□ -2.11
USP48-209ENST00000487880 SBF1O95248 1867 aa1.9□□□□□ -2.11
USP48-209ENST00000487880 LCTP09848 1927 aa1.89□□□□□ -2.11
USP48-209ENST00000487880 WDR90Q96KV7 1748 aa1.89□□□□□ -2.11
USP48-209ENST00000487880 ZNF106Q9H2Y7 1883 aaKnown RBP1.89□□□□□ -2.11
USP48-209ENST00000487880 IGHV1-69-2A0A0G2JMI3 117 aa1.89□□□□□ -2.11
USP48-209ENST00000487880 ZNF860A6NHJ4 632 aa1.89□□□□□ -2.11
USP48-209ENST00000487880 TRAPPC2LH3BP13 241 aa1.89□□□□□ -2.11
USP48-209ENST00000487880 CORTO00230 105 aa1.89□□□□□ -2.11
USP48-209ENST00000487880 HMGN4O00479 90 aa1.89□□□□□ -2.11
USP48-209ENST00000487880 HMGB3O15347 200 aaKnown RBP1.89□□□□□ -2.11
USP48-209ENST00000487880 CCL25O15444 150 aa1.89□□□□□ -2.11
USP48-209ENST00000487880 COCHO43405 550 aa1.89□□□□□ -2.11
USP48-209ENST00000487880 YPEL1O60688 119 aa1.89□□□□□ -2.11
USP48-209ENST00000487880 SFT2D2O95562 160 aa1.89□□□□□ -2.11
USP48-209ENST00000487880 EPPINO95925 133 aa1.89□□□□□ -2.11
USP48-209ENST00000487880 LTAP01374 205 aa1.89□□□□□ -2.11
USP48-209ENST00000487880 CSN2P05814 226 aa1.89□□□□□ -2.11
USP48-209ENST00000487880 IFI6P09912 130 aa1.89□□□□□ -2.11
USP48-209ENST00000487880 CTSEP14091 401 aa1.89□□□□□ -2.11
USP48-209ENST00000487880 CD99P14209 185 aa1.89□□□□□ -2.11
USP48-209ENST00000487880 EMP2P54851 167 aa1.89□□□□□ -2.11
USP48-209ENST00000487880 TPPP2P59282 170 aa1.89□□□□□ -2.11
USP48-209ENST00000487880 ZNF117Q03924 483 aa1.89□□□□□ -2.11
USP48-209ENST00000487880 RPL7L1Q6DKI1 246 aaKnown RBP1.89□□□□□ -2.11
USP48-209ENST00000487880 OLIG3Q7RTU3 272 aa1.89□□□□□ -2.11
USP48-209ENST00000487880 TCTEX1D1Q8N7M0 179 aa1.89□□□□□ -2.11
USP48-209ENST00000487880 OR4D11Q8NGI4 311 aa1.89□□□□□ -2.11
USP48-209ENST00000487880 GPR119Q8TDV5 335 aa1.89□□□□□ -2.11
USP48-209ENST00000487880 SKA2Q8WVK7 121 aaPredicted RBP1.89□□□□□ -2.11
USP48-209ENST00000487880 TSLPQ969D9 159 aa1.89□□□□□ -2.11
USP48-209ENST00000487880 GPR146Q96CH1 333 aa1.89□□□□□ -2.11
USP48-209ENST00000487880 SLAMF6Q96DU3 332 aa1.89□□□□□ -2.11
USP48-209ENST00000487880 GNPNAT1Q96EK6 184 aaPredicted RBP1.89□□□□□ -2.11
USP48-209ENST00000487880 CIB3Q96Q77 187 aaPredicted RBP1.89□□□□□ -2.11
USP48-209ENST00000487880 YPEL2Q96QA6 119 aa1.89□□□□□ -2.11
USP48-209ENST00000487880 OR7D2Q96RA2 312 aa1.89□□□□□ -2.11
USP48-209ENST00000487880 MED10Q9BTT4 135 aa1.89□□□□□ -2.11
USP48-209ENST00000487880 VAMP8Q9BV40 100 aa1.89□□□□□ -2.11
USP48-209ENST00000487880 CST11Q9H112 138 aa1.89□□□□□ -2.11
USP48-209ENST00000487880 CST9LQ9H4G1 147 aa1.89□□□□□ -2.11
USP48-209ENST00000487880 BANF2Q9H503 90 aa1.89□□□□□ -2.11
USP48-209ENST00000487880 ZNF286AQ9HBT8 521 aa1.89□□□□□ -2.11
USP48-209ENST00000487880 GPR84Q9NQS5 396 aa1.89□□□□□ -2.11
USP48-209ENST00000487880 KCNIP2Q9NS61 270 aa1.89□□□□□ -2.11
USP48-209ENST00000487880 NAT8Q9UHE5 227 aa1.89□□□□□ -2.11
USP48-209ENST00000487880 FUT9Q9Y231 359 aa1.89□□□□□ -2.11
USP48-209ENST00000487880 LAMTOR2Q9Y2Q5 125 aa1.89□□□□□ -2.11
USP48-209ENST00000487880 TRAV8-2A0A0B4J237 113 aa1.88□□□□□ -2.11
USP48-209ENST00000487880 OR4C45A6NMZ5 311 aa1.88□□□□□ -2.11
USP48-209ENST00000487880 EEF1E1-BLOC1S5C9J1V9 151 aa1.88□□□□□ -2.11
USP48-209ENST00000487880 C8orf87E5RJ46 101 aa1.88□□□□□ -2.11
USP48-209ENST00000487880 KLRC4-KLRK1H3BQV0 150 aa1.88□□□□□ -2.11
USP48-209ENST00000487880 CCL22O00626 93 aa1.88□□□□□ -2.11
USP48-209ENST00000487880 GEMIN2O14893 280 aaKnown RBP1.88□□□□□ -2.11
USP48-209ENST00000487880 SLC25A20O43772 301 aa1.88□□□□□ -2.11
Retrieved 100 of 20,778 RNA–protein pairs in 43.9 ms