RNA–Protein interactions for RNA: ENST00000487188.1

VPS13D-209, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 2

Gene VPS13D, Length 3,990 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-209ENST00000487188 ATP5LO75964 103 aa4.99□□□□□ -1.61
VPS13D-209ENST00000487188 TNFRSF1AP19438 455 aa4.99□□□□□ -1.61
VPS13D-209ENST00000487188 IGHV1-2P23083 117 aa4.99□□□□□ -1.61
VPS13D-209ENST00000487188 C6orf15Q6UXA7 325 aaPredicted RBP4.99□□□□□ -1.61
VPS13D-209ENST00000487188 TEX29Q8N6K0 151 aa4.99□□□□□ -1.61
VPS13D-209ENST00000487188 MYOZ3Q8TDC0 251 aa4.99□□□□□ -1.61
VPS13D-209ENST00000487188 SCNM1Q9BWG6 230 aa4.99□□□□□ -1.61
VPS13D-209ENST00000487188 ZNRD1Q9P1U0 126 aa4.99□□□□□ -1.61
VPS13D-209ENST00000487188 VPS13AQ96RL7 3174 aa4.99□□□□□ -1.61
VPS13D-209ENST00000487188 A6NJY4 79 aa4.99□□□□□ -1.61
VPS13D-209ENST00000487188 NPYP01303 97 aa4.99□□□□□ -1.61
VPS13D-209ENST00000487188 INSL3P51460 131 aa4.99□□□□□ -1.61
VPS13D-209ENST00000487188 RRN3P1Q2M238 152 aa4.99□□□□□ -1.61
VPS13D-209ENST00000487188 MRPL51Q4U2R6 128 aaKnown RBP4.99□□□□□ -1.61
VPS13D-209ENST00000487188 MBNL2Q5VZF2 373 aaKnown RBP4.99□□□□□ -1.61
VPS13D-209ENST00000487188 ZFAND6Q6FIF0 208 aa4.99□□□□□ -1.61
VPS13D-209ENST00000487188 SCGB1D4Q6XE38 83 aa4.99□□□□□ -1.61
VPS13D-209ENST00000487188 C1orf229Q6ZS94 237 aaPredicted RBP4.99□□□□□ -1.61
VPS13D-209ENST00000487188 DLX4Q92988 240 aaPredicted RBP4.99□□□□□ -1.61
VPS13D-209ENST00000487188 RNF183Q96D59 192 aa4.99□□□□□ -1.61
VPS13D-209ENST00000487188 CCL13Q99616 98 aa4.99□□□□□ -1.61
VPS13D-209ENST00000487188 RASL11BQ9BPW5 248 aa4.99□□□□□ -1.61
VPS13D-209ENST00000487188 NDUFA4L2Q9NRX3 87 aa4.99□□□□□ -1.61
VPS13D-209ENST00000487188 ARFGEF3Q5TH69 2177 aa4.99□□□□□ -1.61
VPS13D-209ENST00000487188 NAV3Q8IVL0 2385 aa4.99□□□□□ -1.61
VPS13D-209ENST00000487188 PRR14LQ5THK1 2151 aa4.99□□□□□ -1.61
VPS13D-209ENST00000487188 NPIPB5A8MRT5 1133 aa4.99□□□□□ -1.61
VPS13D-209ENST00000487188 OR11H12B2RN74 326 aa4.99□□□□□ -1.61
VPS13D-209ENST00000487188 CNIH1O95406 144 aa4.99□□□□□ -1.61
VPS13D-209ENST00000487188 SCGB1C2P0DMR2 95 aa4.99□□□□□ -1.61
VPS13D-209ENST00000487188 SRSF9Q13242 221 aaKnown RBP eCLIP4.99□□□□□ -1.61
VPS13D-209ENST00000487188 UTF1Q5T230 341 aa4.99□□□□□ -1.61
VPS13D-209ENST00000487188 OR11H1Q8NG94 326 aa4.99□□□□□ -1.61
VPS13D-209ENST00000487188 OR11H2Q8NH07 326 aa4.99□□□□□ -1.61
VPS13D-209ENST00000487188 C1QTNF4Q9BXJ3 329 aa4.99□□□□□ -1.61
VPS13D-209ENST00000487188 CACNA1EQ15878 2313 aa4.99□□□□□ -1.61
VPS13D-209ENST00000487188 IGKV2D-26A0A0A0MRZ7 120 aa4.98□□□□□ -1.61
VPS13D-209ENST00000487188 MT-ATP8P03928 68 aa4.98□□□□□ -1.61
VPS13D-209ENST00000487188 MYCNOSP40205 109 aa4.98□□□□□ -1.61
VPS13D-209ENST00000487188 WT1-ASQ06250 92 aa4.98□□□□□ -1.61
VPS13D-209ENST00000487188 KLRD1Q13241 179 aa4.98□□□□□ -1.61
VPS13D-209ENST00000487188 ZCCHC24Q8N2G6 241 aaKnown RBP4.98□□□□□ -1.61
VPS13D-209ENST00000487188 THAP8Q8NA92 274 aa4.98□□□□□ -1.61
VPS13D-209ENST00000487188 OR4C13Q8NGP0 309 aa4.98□□□□□ -1.61
VPS13D-209ENST00000487188 PGPEP1Q9NXJ5 209 aa4.98□□□□□ -1.61
VPS13D-209ENST00000487188 EP300Q09472 2414 aaPredicted RBP4.98□□□□□ -1.61
VPS13D-209ENST00000487188 B5MCH6 92 aa4.98□□□□□ -1.61
VPS13D-209ENST00000487188 HOXA3O43365 443 aaPredicted RBP4.98□□□□□ -1.61
VPS13D-209ENST00000487188 ORM1P02763 201 aa4.98□□□□□ -1.61
VPS13D-209ENST00000487188 CECR9P0C854 216 aa4.98□□□□□ -1.61
VPS13D-209ENST00000487188 GP9P14770 177 aa4.98□□□□□ -1.61
VPS13D-209ENST00000487188 EVI2AP22794 236 aa4.98□□□□□ -1.61
VPS13D-209ENST00000487188 RPL27AP46776 148 aaKnown RBP4.98□□□□□ -1.61
VPS13D-209ENST00000487188 FOXI1Q12951 378 aa4.98□□□□□ -1.61
VPS13D-209ENST00000487188 C17orf58Q2M2W7 97 aa4.98□□□□□ -1.61
VPS13D-209ENST00000487188 ZNF562Q6V9R5 426 aa4.98□□□□□ -1.61
VPS13D-209ENST00000487188 C8orf46Q8TAG6 207 aa4.98□□□□□ -1.61
VPS13D-209ENST00000487188 TRGV9Q99603 122 aa4.98□□□□□ -1.61
VPS13D-209ENST00000487188 TMEM8BA6NDV4 472 aa4.98□□□□□ -1.61
VPS13D-209ENST00000487188 NDUFA3O95167 84 aa4.98□□□□□ -1.61
VPS13D-209ENST00000487188 TGFAP01135 160 aa4.98□□□□□ -1.61
VPS13D-209ENST00000487188 GAGE5Q13069 117 aa4.98□□□□□ -1.61
VPS13D-209ENST00000487188 GAGE6Q13070 117 aa4.98□□□□□ -1.61
VPS13D-209ENST00000487188 MRPL36Q9P0J6 103 aaKnown RBP4.98□□□□□ -1.61
VPS13D-209ENST00000487188 TMEM164Q5U3C3 297 aa4.97□□□□□ -1.61
VPS13D-209ENST00000487188 FAM216BQ8N7L0 139 aa4.97□□□□□ -1.61
VPS13D-209ENST00000487188 VCX2Q9H322 139 aa4.97□□□□□ -1.61
VPS13D-209ENST00000487188 NXT2Q9NPJ8 142 aaKnown RBP4.97□□□□□ -1.61
VPS13D-209ENST00000487188 RNF7Q9UBF6 113 aa4.97□□□□□ -1.61
VPS13D-209ENST00000487188 IGKV1D-37A0A075B6S9 117 aa4.97□□□□□ -1.61
VPS13D-209ENST00000487188 A0A096LNJ9 63 aa4.97□□□□□ -1.61
VPS13D-209ENST00000487188 TRAV40A0A0B4J280 105 aa4.97□□□□□ -1.61
VPS13D-209ENST00000487188 CXCL12P48061 93 aa4.97□□□□□ -1.61
VPS13D-209ENST00000487188 TAL2Q16559 108 aa4.97□□□□□ -1.61
VPS13D-209ENST00000487188 TTC32Q5I0X7 151 aa4.97□□□□□ -1.61
VPS13D-209ENST00000487188 TMEM167AQ8TBQ9 72 aa4.97□□□□□ -1.61
VPS13D-209ENST00000487188 GLMPQ8WWB7 406 aa4.97□□□□□ -1.61
VPS13D-209ENST00000487188 TMEM158Q8WZ71 300 aa4.97□□□□□ -1.61
VPS13D-209ENST00000487188 UFC1Q9Y3C8 167 aa4.97□□□□□ -1.61
VPS13D-209ENST00000487188 CEP192Q8TEP8 1941 aa4.97□□□□□ -1.61
VPS13D-209ENST00000487188 IGHV3-72A0A0B4J1Y9 119 aa4.97□□□□□ -1.61
VPS13D-209ENST00000487188 M0R1B8 84 aa4.97□□□□□ -1.61
VPS13D-209ENST00000487188 C5orf64Q2M2E5 130 aa4.97□□□□□ -1.61
VPS13D-209ENST00000487188 Q6ZUT4 128 aa4.97□□□□□ -1.61
VPS13D-209ENST00000487188 SAP25Q8TEE9 199 aa4.97□□□□□ -1.61
VPS13D-209ENST00000487188 PPDPFLQ8WWR9 84 aa4.97□□□□□ -1.61
VPS13D-209ENST00000487188 TM2D2Q9BX73 214 aa4.97□□□□□ -1.61
VPS13D-209ENST00000487188 SLC25A39Q9BZJ4 359 aaPredicted RBP4.97□□□□□ -1.61
VPS13D-209ENST00000487188 NGBQ9NPG2 151 aa4.97□□□□□ -1.61
VPS13D-209ENST00000487188 RPUSD1Q9UJJ7 312 aaKnown RBP4.97□□□□□ -1.61
VPS13D-209ENST00000487188 ADAMTS20P59510 1910 aa4.97□□□□□ -1.61
VPS13D-209ENST00000487188 CADP27708 2225 aa4.97□□□□□ -1.61
VPS13D-209ENST00000487188 SHISA9B4DS77 424 aa4.97□□□□□ -1.61
VPS13D-209ENST00000487188 SNCGO76070 127 aa4.97□□□□□ -1.61
VPS13D-209ENST00000487188 ODF1Q14990 250 aa4.97□□□□□ -1.61
VPS13D-209ENST00000487188 TMEM75Q8N9X5 138 aa4.97□□□□□ -1.61
VPS13D-209ENST00000487188 C8orf49Q96NF6 230 aa4.97□□□□□ -1.61
VPS13D-209ENST00000487188 SRSF8Q9BRL6 282 aaKnown RBP4.97□□□□□ -1.61
VPS13D-209ENST00000487188 ERG28Q9UKR5 140 aa4.97□□□□□ -1.61
VPS13D-209ENST00000487188 A0A1W2PPI3 338 aa4.96□□□□□ -1.62
Retrieved 100 of 20,778 RNA–protein pairs in 48.6 ms