RNA–Protein interactions for RNA: ENST00000485618.1

SF3A1-208, Transcript of splicing factor 3a subunit 1, humanhuman

TSL 2

Gene SF3A1, Length 593 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1-208ENST00000485618 ATP6V0CP27449 155 aa6.16□□□□□ -1.42
SF3A1-208ENST00000485618 PDE6HQ13956 83 aa6.16□□□□□ -1.42
SF3A1-208ENST00000485618 FAM74A1Q5RGS3 127 aa6.16□□□□□ -1.42
SF3A1-208ENST00000485618 RPL7L1Q6DKI1 246 aaKnown RBP6.16□□□□□ -1.42
SF3A1-208ENST00000485618 PQLC2Q6ZP29 291 aa6.16□□□□□ -1.42
SF3A1-208ENST00000485618 TMUB2Q71RG4 321 aa6.16□□□□□ -1.42
SF3A1-208ENST00000485618 KIR2DL5AQ8N109 375 aa6.16□□□□□ -1.42
SF3A1-208ENST00000485618 KIR2DL5BQ8NHK3 375 aa6.16□□□□□ -1.42
SF3A1-208ENST00000485618 STOML3Q8TAV4 291 aa6.16□□□□□ -1.42
SF3A1-208ENST00000485618 PAXXQ9BUH6 204 aa6.16□□□□□ -1.42
SF3A1-208ENST00000485618 ZNF471Q9BX82 626 aaPredicted RBP6.16□□□□□ -1.42
SF3A1-208ENST00000485618 OR51M1Q9H341 326 aa6.16□□□□□ -1.42
SF3A1-208ENST00000485618 MAP6D1Q9H9H5 199 aa6.16□□□□□ -1.42
SF3A1-208ENST00000485618 C19orf73Q9NVV2 129 aa6.16□□□□□ -1.42
SF3A1-208ENST00000485618 UBQLN2Q9UHD9 624 aa6.16□□□□□ -1.42
SF3A1-208ENST00000485618 PRELID1Q9Y255 219 aa6.16□□□□□ -1.42
SF3A1-208ENST00000485618 G3V3Q6 166 aa6.15□□□□□ -1.42
SF3A1-208ENST00000485618 TEX46H3BTG2 121 aa6.15□□□□□ -1.42
SF3A1-208ENST00000485618 CSN1S1P47710 185 aa6.15□□□□□ -1.42
SF3A1-208ENST00000485618 ODF3L2Q3SX64 289 aa6.15□□□□□ -1.42
SF3A1-208ENST00000485618 ACTL10Q5JWF8 245 aa6.15□□□□□ -1.42
SF3A1-208ENST00000485618 MORN3Q6PF18 240 aaPredicted RBP6.15□□□□□ -1.42
SF3A1-208ENST00000485618 FOXI2Q6ZQN5 318 aa6.15□□□□□ -1.42
SF3A1-208ENST00000485618 APRG1Q8IVJ8 170 aa6.15□□□□□ -1.42
SF3A1-208ENST00000485618 BAP18Q8IXM2 172 aa6.15□□□□□ -1.42
SF3A1-208ENST00000485618 LYPD1Q8N2G4 141 aa6.15□□□□□ -1.42
SF3A1-208ENST00000485618 ZNF738Q8NE65 137 aa6.15□□□□□ -1.42
SF3A1-208ENST00000485618 C1QTNF4Q9BXJ3 329 aa6.15□□□□□ -1.42
SF3A1-208ENST00000485618 CSTL1Q9H114 145 aa6.15□□□□□ -1.42
SF3A1-208ENST00000485618 PPP1R14DQ9NXH3 145 aa6.15□□□□□ -1.42
SF3A1-208ENST00000485618 CXorf1O96002 111 aa6.14□□□□□ -1.43
SF3A1-208ENST00000485618 NBEAP1P0C6P0 100 aa6.14□□□□□ -1.43
SF3A1-208ENST00000485618 SEC11BP0C7V7 166 aa6.14□□□□□ -1.43
SF3A1-208ENST00000485618 CDC34P49427 236 aaPredicted RBP6.14□□□□□ -1.43
SF3A1-208ENST00000485618 RAB5CP51148 216 aa6.14□□□□□ -1.43
SF3A1-208ENST00000485618 RAB2AP61019 212 aa6.14□□□□□ -1.43
SF3A1-208ENST00000485618 GCSAMLQ5JQS6 135 aa6.14□□□□□ -1.43
SF3A1-208ENST00000485618 FAM122CQ6P4D5 195 aa6.14□□□□□ -1.43
SF3A1-208ENST00000485618 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa6.14□□□□□ -1.43
SF3A1-208ENST00000485618 DPPA3Q6W0C5 159 aa6.14□□□□□ -1.43
SF3A1-208ENST00000485618 MIR17HGQ75NE6 70 aa6.14□□□□□ -1.43
SF3A1-208ENST00000485618 SLC51BQ86UW2 128 aa6.14□□□□□ -1.43
SF3A1-208ENST00000485618 OR11H4Q8NGC9 324 aa6.14□□□□□ -1.43
SF3A1-208ENST00000485618 OR10J6PQ8NGY7 276 aa6.14□□□□□ -1.43
SF3A1-208ENST00000485618 RNF141Q8WVD5 230 aa6.14□□□□□ -1.43
SF3A1-208ENST00000485618 MRPL53Q96EL3 112 aaKnown RBP6.14□□□□□ -1.43
SF3A1-208ENST00000485618 SPATA25Q9BR10 227 aa6.14□□□□□ -1.43
SF3A1-208ENST00000485618 TMEM167BQ9NRX6 74 aa6.14□□□□□ -1.43
SF3A1-208ENST00000485618 RYR2Q92736 4967 aa6.14□□□□□ -1.43
SF3A1-208ENST00000485618 TRBV19A0A075B6N1 114 aa6.13□□□□□ -1.43
SF3A1-208ENST00000485618 TRAV5A0A0B4J249 113 aa6.13□□□□□ -1.43
SF3A1-208ENST00000485618 AMBPP02760 352 aa6.13□□□□□ -1.43
SF3A1-208ENST00000485618 IGLC2P0DOY2 106 aa6.13□□□□□ -1.43
SF3A1-208ENST00000485618 UBE2L3P68036 154 aaKnown RBP6.13□□□□□ -1.43
SF3A1-208ENST00000485618 PSG3Q16557 428 aa6.13□□□□□ -1.43
SF3A1-208ENST00000485618 HAGHQ16775 308 aa6.13□□□□□ -1.43
SF3A1-208ENST00000485618 LGALSLQ3ZCW2 172 aaPredicted RBP6.13□□□□□ -1.43
SF3A1-208ENST00000485618 Q6ZWC4 215 aa6.13□□□□□ -1.43
SF3A1-208ENST00000485618 CMTM2Q8TAZ6 248 aa6.13□□□□□ -1.43
SF3A1-208ENST00000485618 RXFP4Q8TDU9 374 aa6.13□□□□□ -1.43
SF3A1-208ENST00000485618 BLNKQ8WV28 456 aa6.13□□□□□ -1.43
SF3A1-208ENST00000485618 CLUHP3Q96NS8 147 aa6.13□□□□□ -1.43
SF3A1-208ENST00000485618 SLC25A2Q9BXI2 301 aa6.13□□□□□ -1.43
SF3A1-208ENST00000485618 NKX6-2Q9C056 277 aaPredicted RBP6.13□□□□□ -1.43
SF3A1-208ENST00000485618 SAV1Q9H4B6 383 aaPredicted RBP6.13□□□□□ -1.43
SF3A1-208ENST00000485618 ZNF331Q9NQX6 463 aaPredicted RBP6.13□□□□□ -1.43
SF3A1-208ENST00000485618 CYTL1Q9NRR1 136 aa6.13□□□□□ -1.43
SF3A1-208ENST00000485618 HYDINQ4G0P3 5121 aa6.12□□□□□ -1.43
SF3A1-208ENST00000485618 CTXND1A0A1B0GTU2 59 aa6.12□□□□□ -1.43
SF3A1-208ENST00000485618 RBMY1BA6NDE4 496 aaKnown RBP6.12□□□□□ -1.43
SF3A1-208ENST00000485618 RBMY1EA6NEQ0 496 aaKnown RBP6.12□□□□□ -1.43
SF3A1-208ENST00000485618 H3BMM0 161 aa6.12□□□□□ -1.43
SF3A1-208ENST00000485618 SOCS3O14543 225 aa6.12□□□□□ -1.43
SF3A1-208ENST00000485618 RBMY1DP0C7P1 496 aaKnown RBP6.12□□□□□ -1.43
SF3A1-208ENST00000485618 HLA-DRB4P13762 266 aa6.12□□□□□ -1.43
SF3A1-208ENST00000485618 RPL35AP18077 110 aaKnown RBP6.12□□□□□ -1.43
SF3A1-208ENST00000485618 TSPOP30536 169 aa6.12□□□□□ -1.43
SF3A1-208ENST00000485618 LINC00322Q6ZN03 302 aaPredicted RBP6.12□□□□□ -1.43
SF3A1-208ENST00000485618 ARL6IP6Q8N6S5 226 aa6.12□□□□□ -1.43
SF3A1-208ENST00000485618 OR4B1Q8NGF8 309 aa6.12□□□□□ -1.43
SF3A1-208ENST00000485618 DNAH3Q8TD57 4116 aa6.12□□□□□ -1.43
SF3A1-208ENST00000485618 RAB24Q969Q5 203 aa6.12□□□□□ -1.43
SF3A1-208ENST00000485618 RPUSD4Q96CM3 377 aaKnown RBP6.12□□□□□ -1.43
SF3A1-208ENST00000485618 SH3BGRL3Q9H299 93 aa6.12□□□□□ -1.43
SF3A1-208ENST00000485618 TP53TG1Q9Y2A0 90 aa6.12□□□□□ -1.43
SF3A1-208ENST00000485618 HLA-DRB4X5D2U9 266 aa6.12□□□□□ -1.43
SF3A1-208ENST00000485618 KNCNA6PVL3 124 aa6.11□□□□□ -1.43
SF3A1-208ENST00000485618 H3BQ15 152 aa6.11□□□□□ -1.43
SF3A1-208ENST00000485618 K7EQM0 130 aa6.11□□□□□ -1.43
SF3A1-208ENST00000485618 MRPS12O15235 138 aaKnown RBP6.11□□□□□ -1.43
SF3A1-208ENST00000485618 OR10J4P0C629 311 aa6.11□□□□□ -1.43
SF3A1-208ENST00000485618 STAG3L2P0CL84 134 aa6.11□□□□□ -1.43
SF3A1-208ENST00000485618 STAG3L3P0CL85 134 aa6.11□□□□□ -1.43
SF3A1-208ENST00000485618 PYYP10082 97 aa6.11□□□□□ -1.43
SF3A1-208ENST00000485618 PPT1P50897 306 aa6.11□□□□□ -1.43
SF3A1-208ENST00000485618 RANP62826 216 aaKnown RBP6.11□□□□□ -1.43
SF3A1-208ENST00000485618 MORN5Q5VZ52 161 aa6.11□□□□□ -1.43
SF3A1-208ENST00000485618 SBSPONQ8IVN8 264 aa6.11□□□□□ -1.43
SF3A1-208ENST00000485618 IQCF2Q8IXL9 164 aa6.11□□□□□ -1.43
SF3A1-208ENST00000485618 RPP25LQ8N5L8 163 aaKnown RBP6.11□□□□□ -1.43
Retrieved 100 of 20,778 RNA–protein pairs in 32.3 ms