RNA–Protein interactions for RNA: ENST00000484954.1

VPS50-216, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 4

Gene VPS50, Length 594 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-216ENST00000484954 CASP8AP2Q9UKL3 1982 aa0.09□□□□□ -2.39
VPS50-216ENST00000484954 H3BRM9 83 aa0.09□□□□□ -2.4
VPS50-216ENST00000484954 ATP5HO75947 161 aa0.09□□□□□ -2.4
VPS50-216ENST00000484954 NDUFC2O95298 119 aa0.09□□□□□ -2.4
VPS50-216ENST00000484954 MRPS25P82663 173 aaKnown RBP0.09□□□□□ -2.4
VPS50-216ENST00000484954 MIR22HGQ0VDD5 57 aa0.09□□□□□ -2.4
VPS50-216ENST00000484954 SPINK9Q5DT21 86 aa0.09□□□□□ -2.4
VPS50-216ENST00000484954 ARPINQ7Z6K5 226 aa0.09□□□□□ -2.4
VPS50-216ENST00000484954 TEN1Q86WV5 123 aa0.09□□□□□ -2.4
VPS50-216ENST00000484954 ATOH7Q8N100 152 aa0.09□□□□□ -2.4
VPS50-216ENST00000484954 OR5AS1Q8N127 324 aa0.09□□□□□ -2.4
VPS50-216ENST00000484954 PXT1Q8NFP0 134 aa0.09□□□□□ -2.4
VPS50-216ENST00000484954 MUCL1Q96DR8 90 aa0.09□□□□□ -2.4
VPS50-216ENST00000484954 PHB2Q99623 299 aa0.09□□□□□ -2.4
VPS50-216ENST00000484954 SH3BGRL3Q9H299 93 aa0.09□□□□□ -2.4
VPS50-216ENST00000484954 TMEM138Q9NPI0 162 aa0.09□□□□□ -2.4
VPS50-216ENST00000484954 FRAS1Q86XX4 4008 aa0.09□□□□□ -2.4
VPS50-216ENST00000484954 FAT4Q6V0I7 4981 aa0.09□□□□□ -2.4
VPS50-216ENST00000484954 CEP164Q9UPV0 1460 aa0.09□□□□□ -2.4
VPS50-216ENST00000484954 DENND4CQ5VZ89 1909 aa0.09□□□□□ -2.4
VPS50-216ENST00000484954 MYO18AQ92614 2054 aaKnown RBP0.09□□□□□ -2.4
VPS50-216ENST00000484954 UBR4Q5T4S7 5183 aa0.08□□□□□ -2.4
VPS50-216ENST00000484954 BCL9O00512 1426 aa0.08□□□□□ -2.4
VPS50-216ENST00000484954 KDM6AO15550 1401 aaPredicted RBP0.08□□□□□ -2.4
VPS50-216ENST00000484954 MIA2Q96PC5 1412 aa0.08□□□□□ -2.4
VPS50-216ENST00000484954 ODAMA1E959 279 aa0.08□□□□□ -2.4
VPS50-216ENST00000484954 C5orf67F2Z3F1 127 aa0.08□□□□□ -2.4
VPS50-216ENST00000484954 JMJD7-PLA2G4BH0Y9G9 81 aa0.08□□□□□ -2.4
VPS50-216ENST00000484954 H7C1C5 153 aa0.08□□□□□ -2.4
VPS50-216ENST00000484954 K7ERJ3 54 aa0.08□□□□□ -2.4
VPS50-216ENST00000484954 RER1O15258 196 aa0.08□□□□□ -2.4
VPS50-216ENST00000484954 MFSD11O43934 449 aa0.08□□□□□ -2.4
VPS50-216ENST00000484954 BANF1O75531 89 aa0.08□□□□□ -2.4
VPS50-216ENST00000484954 IGHV3-33P01772 117 aa0.08□□□□□ -2.4
VPS50-216ENST00000484954 TRGC2P03986 189 aa0.08□□□□□ -2.4
VPS50-216ENST00000484954 CD14P08571 375 aa0.08□□□□□ -2.4
VPS50-216ENST00000484954 PHBP35232 272 aa0.08□□□□□ -2.4
VPS50-216ENST00000484954 FOXA3P55318 350 aaPredicted RBP0.08□□□□□ -2.4
VPS50-216ENST00000484954 ARF6P62330 175 aa0.08□□□□□ -2.4
VPS50-216ENST00000484954 LCN6P62502 163 aa0.08□□□□□ -2.4
VPS50-216ENST00000484954 SPATA45Q537H7 98 aa0.08□□□□□ -2.4
VPS50-216ENST00000484954 AKR1C8PQ5T2L2 129 aa0.08□□□□□ -2.4
VPS50-216ENST00000484954 C1orf140Q5VVS0 124 aa0.08□□□□□ -2.4
VPS50-216ENST00000484954 NUP35Q8NFH5 326 aa0.08□□□□□ -2.4
VPS50-216ENST00000484954 TAF9BQ9HBM6 251 aa0.08□□□□□ -2.4
VPS50-216ENST00000484954 SS18L2Q9UHA2 77 aa0.08□□□□□ -2.4
VPS50-216ENST00000484954 ECM29Q5VYK3 1845 aa0.08□□□□□ -2.4
VPS50-216ENST00000484954 TAF1LQ8IZX4 1826 aa0.08□□□□□ -2.4
VPS50-216ENST00000484954 TRAV5A0A0B4J249 113 aa0.07□□□□□ -2.4
VPS50-216ENST00000484954 C9orf170A2RU37 121 aa0.07□□□□□ -2.4
VPS50-216ENST00000484954 RIIAD1A6NNX1 92 aa0.07□□□□□ -2.4
VPS50-216ENST00000484954 AIPO00170 330 aa0.07□□□□□ -2.4
VPS50-216ENST00000484954 CST7O76096 145 aa0.07□□□□□ -2.4
VPS50-216ENST00000484954 PPYP01298 95 aa0.07□□□□□ -2.4
VPS50-216ENST00000484954 CSN2P05814 226 aa0.07□□□□□ -2.4
VPS50-216ENST00000484954 IDO1P14902 403 aa0.07□□□□□ -2.4
VPS50-216ENST00000484954 OGNP20774 298 aaKnown RBP0.07□□□□□ -2.4
VPS50-216ENST00000484954 KLRD1Q13241 179 aa0.07□□□□□ -2.4
VPS50-216ENST00000484954 SNCBQ16143 134 aa0.07□□□□□ -2.4
VPS50-216ENST00000484954 LTC4SQ16873 150 aa0.07□□□□□ -2.4
VPS50-216ENST00000484954 SCGB2B2Q4G0G5 96 aa0.07□□□□□ -2.4
VPS50-216ENST00000484954 FOXI2Q6ZQN5 318 aa0.07□□□□□ -2.4
VPS50-216ENST00000484954 LINC00269Q8N2A0 174 aa0.07□□□□□ -2.4
VPS50-216ENST00000484954 ZNF431Q8TF32 576 aaPredicted RBP0.07□□□□□ -2.4
VPS50-216ENST00000484954 CHMP6Q96FZ7 201 aa0.07□□□□□ -2.4
VPS50-216ENST00000484954 ZNF714Q96N38 554 aa0.07□□□□□ -2.4
VPS50-216ENST00000484954 FAM103A1Q9BTL3 118 aaKnown RBP0.07□□□□□ -2.4
VPS50-216ENST00000484954 SPRR2GQ9BYE4 73 aa0.07□□□□□ -2.4
VPS50-216ENST00000484954 OR2J1Q9GZK6 312 aa0.07□□□□□ -2.4
VPS50-216ENST00000484954 OTORQ9NRC9 128 aa0.07□□□□□ -2.4
VPS50-216ENST00000484954 LYRM2Q9NU23 88 aaPredicted RBP0.07□□□□□ -2.4
VPS50-216ENST00000484954 OR52A1Q9UKL2 312 aa0.07□□□□□ -2.4
VPS50-216ENST00000484954 ZFC3H1O60293 1989 aaKnown RBP0.06□□□□□ -2.4
VPS50-216ENST00000484954 KMT2CQ8NEZ4 4911 aaKnown RBP0.06□□□□□ -2.4
VPS50-216ENST00000484954 OBSL1O75147 1896 aa0.06□□□□□ -2.4
VPS50-216ENST00000484954 TRAV23DV6A0A075B6W5 121 aa0.06□□□□□ -2.4
VPS50-216ENST00000484954 A0A0J9YY99 117 aa0.06□□□□□ -2.4
VPS50-216ENST00000484954 hDV103S1A0JD37 113 aa0.06□□□□□ -2.4
VPS50-216ENST00000484954 ZNF727A8MUV8 499 aa0.06□□□□□ -2.4
VPS50-216ENST00000484954 G3V2T6 193 aa0.06□□□□□ -2.4
VPS50-216ENST00000484954 IFNA1P01562 189 aa0.06□□□□□ -2.4
VPS50-216ENST00000484954 HBBP68871 147 aa0.06□□□□□ -2.4
VPS50-216ENST00000484954 TMED2Q15363 201 aa0.06□□□□□ -2.4
VPS50-216ENST00000484954 OCIAD2Q56VL3 154 aa0.06□□□□□ -2.4
VPS50-216ENST00000484954 SMIM20Q8N5G0 67 aa0.06□□□□□ -2.4
VPS50-216ENST00000484954 PLAC4Q8WY50 150 aa0.06□□□□□ -2.4
VPS50-216ENST00000484954 MALSU1Q96EH3 234 aa0.06□□□□□ -2.4
VPS50-216ENST00000484954 CEP19Q96LK0 163 aa0.06□□□□□ -2.4
VPS50-216ENST00000484954 GINS3Q9BRX5 216 aa0.06□□□□□ -2.4
VPS50-216ENST00000484954 ASH1LQ9NR48 2969 aaKnown RBP0.06□□□□□ -2.4
VPS50-216ENST00000484954 IL20Q9NYY1 176 aa0.06□□□□□ -2.4
VPS50-216ENST00000484954 SSR3Q9UNL2 185 aa0.06□□□□□ -2.4
VPS50-216ENST00000484954 UFC1Q9Y3C8 167 aa0.06□□□□□ -2.4
VPS50-216ENST00000484954 SYNE1Q8NF91 8797 aaKnown RBP0.06□□□□□ -2.4
VPS50-216ENST00000484954 ALPK3Q96L96 1907 aa0.05□□□□□ -2.4
VPS50-216ENST00000484954 MYH10P35580 1976 aa0.05□□□□□ -2.4
VPS50-216ENST00000484954 TRBV30A0A0K0K1B3 111 aa0.05□□□□□ -2.4
VPS50-216ENST00000484954 HIST1H2BKO60814 126 aa0.05□□□□□ -2.4
VPS50-216ENST00000484954 ATG12O94817 140 aa0.05□□□□□ -2.4
VPS50-216ENST00000484954 HIST1H2BJP06899 126 aa0.05□□□□□ -2.4
Retrieved 100 of 20,778 RNA–protein pairs in 30.4 ms