RNA–Protein interactions for RNA: ENST00000484581.6

VPS13A-211, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 2 BASIC

Gene VPS13A, Length 1,155 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-211ENST00000484581 JPT1Q9UK76 154 aa1.87□□□□□ -2.11
VPS13A-211ENST00000484581 ZFC3H1O60293 1989 aaKnown RBP1.87□□□□□ -2.11
VPS13A-211ENST00000484581 PIK3C2AO00443 1686 aa1.86□□□□□ -2.11
VPS13A-211ENST00000484581 RTL9Q8NET4 1388 aa1.86□□□□□ -2.11
VPS13A-211ENST00000484581 CEP192Q8TEP8 1941 aa1.86□□□□□ -2.11
VPS13A-211ENST00000484581 FHAD1B1AJZ9 1412 aa1.86□□□□□ -2.11
VPS13A-211ENST00000484581 A0A087WSZ3 146 aa1.86□□□□□ -2.11
VPS13A-211ENST00000484581 TRBV7-6A0A0J9YX20 115 aa1.86□□□□□ -2.11
VPS13A-211ENST00000484581 A0A1B0GX51 115 aa1.86□□□□□ -2.11
VPS13A-211ENST00000484581 TCRBV4S1A1TA0A5B7 111 aa1.86□□□□□ -2.11
VPS13A-211ENST00000484581 B4DSR2 109 aa1.86□□□□□ -2.11
VPS13A-211ENST00000484581 J3KT08 172 aa1.86□□□□□ -2.11
VPS13A-211ENST00000484581 RNASE3P12724 160 aaKnown RBP1.86□□□□□ -2.11
VPS13A-211ENST00000484581 LINC00305Q7Z4B0 112 aa1.86□□□□□ -2.11
VPS13A-211ENST00000484581 FAM216BQ8N7L0 139 aa1.86□□□□□ -2.11
VPS13A-211ENST00000484581 HYLS1Q96M11 299 aa1.86□□□□□ -2.11
VPS13A-211ENST00000484581 CHCHD2Q9Y6H1 151 aaPredicted RBP1.86□□□□□ -2.11
VPS13A-211ENST00000484581 TANC2Q9HCD6 1990 aa1.85□□□□□ -2.11
VPS13A-211ENST00000484581 ARFGEF3Q5TH69 2177 aa1.85□□□□□ -2.11
VPS13A-211ENST00000484581 M0R233 179 aa1.85□□□□□ -2.11
VPS13A-211ENST00000484581 MRPS14O60783 128 aaKnown RBP1.85□□□□□ -2.11
VPS13A-211ENST00000484581 GTF2A1P52655 376 aaPredicted RBP1.85□□□□□ -2.11
VPS13A-211ENST00000484581 CDK6Q00534 326 aa1.85□□□□□ -2.11
VPS13A-211ENST00000484581 C1orf137Q5JT78 98 aa1.85□□□□□ -2.11
VPS13A-211ENST00000484581 C1orf134Q5TEV5 83 aa1.85□□□□□ -2.11
VPS13A-211ENST00000484581 C4orf22Q6V702 233 aa1.85□□□□□ -2.11
VPS13A-211ENST00000484581 Q8N2B8 174 aa1.85□□□□□ -2.11
VPS13A-211ENST00000484581 Q8N814 137 aa1.85□□□□□ -2.11
VPS13A-211ENST00000484581 TP53RKQ96S44 253 aa1.85□□□□□ -2.11
VPS13A-211ENST00000484581 ARHGEF11O15085 1522 aa1.85□□□□□ -2.11
VPS13A-211ENST00000484581 NISCHQ9Y2I1 1504 aa1.85□□□□□ -2.11
VPS13A-211ENST00000484581 SDK1Q7Z5N4 2213 aa1.85□□□□□ -2.11
VPS13A-211ENST00000484581 FER1L6Q2WGJ9 1857 aa1.84□□□□□ -2.11
VPS13A-211ENST00000484581 TRAV36DV7A0A075B6V5 113 aa1.84□□□□□ -2.11
VPS13A-211ENST00000484581 IGKV2D-26A0A0A0MRZ7 120 aa1.84□□□□□ -2.11
VPS13A-211ENST00000484581 BORCS7-ASMTA0A0B4J1R7 106 aa1.84□□□□□ -2.11
VPS13A-211ENST00000484581 OR2T8A6NH00 312 aa1.84□□□□□ -2.11
VPS13A-211ENST00000484581 H3BMG7 143 aa1.84□□□□□ -2.11
VPS13A-211ENST00000484581 LYRM1O43325 122 aa1.84□□□□□ -2.11
VPS13A-211ENST00000484581 KRTAP12-3P60328 96 aa1.84□□□□□ -2.11
VPS13A-211ENST00000484581 CNBPP62633 177 aaKnown RBP1.84□□□□□ -2.11
VPS13A-211ENST00000484581 MRPS36P82909 103 aaKnown RBP1.84□□□□□ -2.11
VPS13A-211ENST00000484581 CLECL1Q8IZS7 167 aa1.84□□□□□ -2.11
VPS13A-211ENST00000484581 OR5D14Q8NGL3 314 aa1.84□□□□□ -2.11
VPS13A-211ENST00000484581 DIRC1Q969H9 104 aa1.84□□□□□ -2.11
VPS13A-211ENST00000484581 NAA38Q9BRA0 125 aaKnown RBP1.84□□□□□ -2.11
VPS13A-211ENST00000484581 REG4Q9BYZ8 158 aa1.84□□□□□ -2.11
VPS13A-211ENST00000484581 CYSTM1Q9H1C7 97 aa1.84□□□□□ -2.11
VPS13A-211ENST00000484581 TAF9BQ9HBM6 251 aa1.84□□□□□ -2.11
VPS13A-211ENST00000484581 MED9Q9NWA0 146 aa1.84□□□□□ -2.11
VPS13A-211ENST00000484581 EXPH5Q8NEV8 1989 aa1.83□□□□□ -2.12
VPS13A-211ENST00000484581 KIAA1549Q9HCM3 1950 aa1.83□□□□□ -2.12
VPS13A-211ENST00000484581 TRAV27A0A087WT01 109 aa1.83□□□□□ -2.12
VPS13A-211ENST00000484581 TRAV13-1A0A0B4J241 112 aa1.83□□□□□ -2.12
VPS13A-211ENST00000484581 TRBV27A0A0K0K1C4 114 aa1.83□□□□□ -2.12
VPS13A-211ENST00000484581 LOC107984640A0A0U1RRK4 108 aa1.83□□□□□ -2.12
VPS13A-211ENST00000484581 ARPC5O15511 151 aa1.83□□□□□ -2.12
VPS13A-211ENST00000484581 HYPMO75409 117 aa1.83□□□□□ -2.12
VPS13A-211ENST00000484581 MT-ND6P03923 174 aa1.83□□□□□ -2.12
VPS13A-211ENST00000484581 ARPC4P59998 168 aa1.83□□□□□ -2.12
VPS13A-211ENST00000484581 CDK5R1Q15078 307 aa1.83□□□□□ -2.12
VPS13A-211ENST00000484581 OR8B8Q15620 311 aa1.83□□□□□ -2.12
VPS13A-211ENST00000484581 C2orf82Q6UX34 121 aa1.83□□□□□ -2.12
VPS13A-211ENST00000484581 OR4B1Q8NGF8 309 aa1.83□□□□□ -2.12
VPS13A-211ENST00000484581 OR5H6Q8NGV6 325 aa1.83□□□□□ -2.12
VPS13A-211ENST00000484581 ZNF563Q8TA94 476 aa1.83□□□□□ -2.12
VPS13A-211ENST00000484581 MAFIPQ8WZ33 124 aa1.83□□□□□ -2.12
VPS13A-211ENST00000484581 RAB37Q96AX2 223 aa1.83□□□□□ -2.12
VPS13A-211ENST00000484581 MUCL1Q96DR8 90 aa1.83□□□□□ -2.12
VPS13A-211ENST00000484581 HEATR1Q9H583 2144 aaKnown RBP1.83□□□□□ -2.12
VPS13A-211ENST00000484581 PLXNA4Q9HCM2 1894 aa1.83□□□□□ -2.12
VPS13A-211ENST00000484581 MYLKQ15746 1914 aa1.83□□□□□ -2.12
VPS13A-211ENST00000484581 FREM3P0C091 2139 aa1.82□□□□□ -2.12
VPS13A-211ENST00000484581 A2MP01023 1474 aa1.82□□□□□ -2.12
VPS13A-211ENST00000484581 TRAV10A0A0B4J240 114 aa1.82□□□□□ -2.12
VPS13A-211ENST00000484581 hDV103S1A0JD37 113 aa1.82□□□□□ -2.12
VPS13A-211ENST00000484581 J3QKU1 62 aa1.82□□□□□ -2.12
VPS13A-211ENST00000484581 DBIP07108 87 aaKnown RBP1.82□□□□□ -2.12
VPS13A-211ENST00000484581 ZNF93P35789 620 aaPredicted RBP1.82□□□□□ -2.12
VPS13A-211ENST00000484581 SRP9P49458 86 aaKnown RBP1.82□□□□□ -2.12
VPS13A-211ENST00000484581 VMA21Q3ZAQ7 101 aa1.82□□□□□ -2.12
VPS13A-211ENST00000484581 CCDC153Q494R4 210 aa1.82□□□□□ -2.12
VPS13A-211ENST00000484581 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP1.82□□□□□ -2.12
VPS13A-211ENST00000484581 OR4C6Q8NH72 309 aa1.82□□□□□ -2.12
VPS13A-211ENST00000484581 PRELID3AQ96N28 172 aa1.82□□□□□ -2.12
VPS13A-211ENST00000484581 CBLN4Q9NTU7 201 aa1.82□□□□□ -2.12
VPS13A-211ENST00000484581 FRMPD1Q5SYB0 1578 aa1.81□□□□□ -2.12
VPS13A-211ENST00000484581 TRBV6-8A0A0A6YYG3 113 aa1.81□□□□□ -2.12
VPS13A-211ENST00000484581 ERC2-IT1O76042 136 aa1.81□□□□□ -2.12
VPS13A-211ENST00000484581 SCTP09683 121 aa1.81□□□□□ -2.12
VPS13A-211ENST00000484581 RPL22P35268 128 aaKnown RBP1.81□□□□□ -2.12
VPS13A-211ENST00000484581 OR8I2Q8N0Y5 310 aa1.81□□□□□ -2.12
VPS13A-211ENST00000484581 TEX29Q8N6K0 151 aa1.81□□□□□ -2.12
VPS13A-211ENST00000484581 C15orf53Q8NAA6 179 aa1.81□□□□□ -2.12
VPS13A-211ENST00000484581 CCL4L1Q8NHW4 92 aa1.81□□□□□ -2.12
VPS13A-211ENST00000484581 TAS2R7Q9NYW3 318 aa1.81□□□□□ -2.12
VPS13A-211ENST00000484581 ARHGEF10O15013 1369 aa1.81□□□□□ -2.12
VPS13A-211ENST00000484581 TMEM189A5PLL7 270 aa1.8□□□□□ -2.12
VPS13A-211ENST00000484581 TEX261Q6UWH6 196 aa1.8□□□□□ -2.12
VPS13A-211ENST00000484581 UNQ6190/PRO20217Q6UXQ8 127 aa1.8□□□□□ -2.12
Retrieved 100 of 20,778 RNA–protein pairs in 50.7 ms