RNA–Protein interactions for RNA: ENST00000478916.5

SYNE1-224, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 2

Gene SYNE1, Length 7,780 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-224ENST00000478916 C1QTNF4Q9BXJ3 329 aa7.21□□□□□ -1.26
SYNE1-224ENST00000478916 TRAV13-1A0A0B4J241 112 aa7.21□□□□□ -1.26
SYNE1-224ENST00000478916 A0A1W2PPM0 123 aa7.21□□□□□ -1.26
SYNE1-224ENST00000478916 SRRM5B3KS81 715 aa7.21□□□□□ -1.26
SYNE1-224ENST00000478916 TMEM178BH3BS89 294 aa7.21□□□□□ -1.26
SYNE1-224ENST00000478916 C1orf159Q96HA4 380 aa7.21□□□□□ -1.26
SYNE1-224ENST00000478916 CRYGSP22914 178 aa7.21□□□□□ -1.26
SYNE1-224ENST00000478916 LYPD1Q8N2G4 141 aa7.21□□□□□ -1.26
SYNE1-224ENST00000478916 FGF6P10767 208 aa7.21□□□□□ -1.26
SYNE1-224ENST00000478916 CD24P25063 80 aa7.21□□□□□ -1.26
SYNE1-224ENST00000478916 ETDBQ3ZM63 59 aa7.21□□□□□ -1.26
SYNE1-224ENST00000478916 K7ENP7 123 aa7.2□□□□□ -1.26
SYNE1-224ENST00000478916 DOCK6Q96HP0 2047 aa7.2□□□□□ -1.26
SYNE1-224ENST00000478916 A0A0A6YYD4 124 aa7.2□□□□□ -1.26
SYNE1-224ENST00000478916 POU2AF1Q16633 256 aa7.2□□□□□ -1.26
SYNE1-224ENST00000478916 UBE2DNLQ8IWF7 75 aa7.2□□□□□ -1.26
SYNE1-224ENST00000478916 AMN1Q8IY45 258 aa7.2□□□□□ -1.26
SYNE1-224ENST00000478916 RPP25LQ8N5L8 163 aaKnown RBP7.2□□□□□ -1.26
SYNE1-224ENST00000478916 SS18L2Q9UHA2 77 aa7.2□□□□□ -1.26
SYNE1-224ENST00000478916 IGHV1-24A0A0C4DH33 117 aa7.2□□□□□ -1.26
SYNE1-224ENST00000478916 SMKR1H3BMG3 65 aa7.2□□□□□ -1.26
SYNE1-224ENST00000478916 DEFB104AQ8WTQ1 72 aa7.2□□□□□ -1.26
SYNE1-224ENST00000478916 FREM3P0C091 2139 aa7.2□□□□□ -1.26
SYNE1-224ENST00000478916 IGHV1-8P0DP01 117 aa7.2□□□□□ -1.26
SYNE1-224ENST00000478916 C5orf47Q569G3 176 aa7.2□□□□□ -1.26
SYNE1-224ENST00000478916 MORN5Q5VZ52 161 aa7.2□□□□□ -1.26
SYNE1-224ENST00000478916 RNF5Q99942 180 aa7.2□□□□□ -1.26
SYNE1-224ENST00000478916 KMT2EQ8IZD2 1858 aa7.2□□□□□ -1.26
SYNE1-224ENST00000478916 SRRM4A7MD48 611 aaKnown RBP7.2□□□□□ -1.26
SYNE1-224ENST00000478916 MMP23AO75900 390 aa7.2□□□□□ -1.26
SYNE1-224ENST00000478916 C11orf44Q8N8P7 122 aa7.2□□□□□ -1.26
SYNE1-224ENST00000478916 RNF114Q9Y508 228 aa7.2□□□□□ -1.26
SYNE1-224ENST00000478916 LILRA1O75019 489 aa7.2□□□□□ -1.26
SYNE1-224ENST00000478916 RPL15P61313 204 aaKnown RBP7.2□□□□□ -1.26
SYNE1-224ENST00000478916 C14orf178Q8N769 122 aaPredicted RBP7.2□□□□□ -1.26
SYNE1-224ENST00000478916 TMEM141Q96I45 108 aa7.2□□□□□ -1.26
SYNE1-224ENST00000478916 THSD7BQ9C0I4 1608 aa7.2□□□□□ -1.26
SYNE1-224ENST00000478916 LYPD3O95274 346 aa7.19□□□□□ -1.26
SYNE1-224ENST00000478916 PRR31Q5SQ13 230 aa7.19□□□□□ -1.26
SYNE1-224ENST00000478916 CEND1Q8N111 149 aa7.19□□□□□ -1.26
SYNE1-224ENST00000478916 IGHG4P01861 327 aa7.19□□□□□ -1.26
SYNE1-224ENST00000478916 NYNRINQ9P2P1 1898 aaKnown RBP7.19□□□□□ -1.26
SYNE1-224ENST00000478916 TRGV1A0A0A0MS02 117 aa7.19□□□□□ -1.26
SYNE1-224ENST00000478916 IGHV2-70P01814 119 aa7.19□□□□□ -1.26
SYNE1-224ENST00000478916 LIME1Q9H400 295 aa7.19□□□□□ -1.26
SYNE1-224ENST00000478916 RPUSD1Q9UJJ7 312 aaKnown RBP7.19□□□□□ -1.26
SYNE1-224ENST00000478916 TMEM200BQ69YZ2 307 aa7.19□□□□□ -1.26
SYNE1-224ENST00000478916 OR11H6Q8NGC7 330 aa7.19□□□□□ -1.26
SYNE1-224ENST00000478916 MESP1Q9BRJ9 268 aa7.19□□□□□ -1.26
SYNE1-224ENST00000478916 B5MCH6 92 aa7.19□□□□□ -1.26
SYNE1-224ENST00000478916 COX8AP10176 69 aa7.18□□□□□ -1.26
SYNE1-224ENST00000478916 SP5Q6BEB4 398 aaPredicted RBP7.18□□□□□ -1.26
SYNE1-224ENST00000478916 C9orf139Q6ZV77 190 aa7.18□□□□□ -1.26
SYNE1-224ENST00000478916 FGFBP3Q8TAT2 258 aa7.18□□□□□ -1.26
SYNE1-224ENST00000478916 DOCK4Q8N1I0 1966 aa7.18□□□□□ -1.26
SYNE1-224ENST00000478916 GREB1Q4ZG55 1949 aa7.18□□□□□ -1.26
SYNE1-224ENST00000478916 FAM186AA6NE01 2351 aa7.18□□□□□ -1.26
SYNE1-224ENST00000478916 IGKV1-9A0A0C4DH69 117 aa7.18□□□□□ -1.26
SYNE1-224ENST00000478916 TRPT1Q86TN4 253 aaKnown RBP7.18□□□□□ -1.26
SYNE1-224ENST00000478916 GATA3P23771 443 aa7.18□□□□□ -1.26
SYNE1-224ENST00000478916 LHFPL1Q86WI0 220 aa7.18□□□□□ -1.26
SYNE1-224ENST00000478916 PAQR4Q8N4S7 273 aaPredicted RBP7.18□□□□□ -1.26
SYNE1-224ENST00000478916 PRO1854Q9UHT4 67 aa7.18□□□□□ -1.26
SYNE1-224ENST00000478916 YLPM1P49750 1951 aaKnown RBP7.18□□□□□ -1.26
SYNE1-224ENST00000478916 A0A1B0GWJ7 208 aa7.18□□□□□ -1.26
SYNE1-224ENST00000478916 SPSB3Q6PJ21 355 aa7.18□□□□□ -1.26
SYNE1-224ENST00000478916 TMEM14EPQ6UXP3 125 aa7.18□□□□□ -1.26
SYNE1-224ENST00000478916 BOD1L2Q8IYS8 172 aa7.18□□□□□ -1.26
SYNE1-224ENST00000478916 TRBV7-1A0A0A6YYK4 115 aa7.18□□□□□ -1.26
SYNE1-224ENST00000478916 TRAV12-1A0A0B4J245 112 aa7.18□□□□□ -1.26
SYNE1-224ENST00000478916 TFF1P04155 84 aa7.18□□□□□ -1.26
SYNE1-224ENST00000478916 IGLC2P0DOY2 106 aa7.18□□□□□ -1.26
SYNE1-224ENST00000478916 IGLC3P0DOY3 106 aa7.18□□□□□ -1.26
SYNE1-224ENST00000478916 H3BUX3 64 aa7.18□□□□□ -1.26
SYNE1-224ENST00000478916 J3QRE1 110 aa7.18□□□□□ -1.26
SYNE1-224ENST00000478916 ZNF329Q86UD4 541 aa7.18□□□□□ -1.26
SYNE1-224ENST00000478916 IGHV1-3A0A0C4DH29 117 aa7.17□□□□□ -1.26
SYNE1-224ENST00000478916 CDKN1BP46527 198 aa7.17□□□□□ -1.26
SYNE1-224ENST00000478916 SYNJ2BPP57105 145 aa7.17□□□□□ -1.26
SYNE1-224ENST00000478916 HGFACQ04756 655 aa7.17□□□□□ -1.26
SYNE1-224ENST00000478916 C3orf36Q3SXR2 165 aa7.17□□□□□ -1.26
SYNE1-224ENST00000478916 C3orf56Q8N813 242 aa7.17□□□□□ -1.26
SYNE1-224ENST00000478916 CHD3Q12873 2000 aaKnown RBP7.17□□□□□ -1.26
SYNE1-224ENST00000478916 TRAV25A0A0B4J276 109 aa7.17□□□□□ -1.26
SYNE1-224ENST00000478916 SUPT4H1P63272 117 aaKnown RBP7.17□□□□□ -1.26
SYNE1-224ENST00000478916 DEFB121Q5J5C9 76 aa7.17□□□□□ -1.26
SYNE1-224ENST00000478916 TMEM219Q86XT9 240 aa7.17□□□□□ -1.26
SYNE1-224ENST00000478916 RNF166Q96A37 237 aaPredicted RBP7.17□□□□□ -1.26
SYNE1-224ENST00000478916 J3QKU1 62 aa7.17□□□□□ -1.26
SYNE1-224ENST00000478916 PSCAO43653 123 aa7.17□□□□□ -1.26
SYNE1-224ENST00000478916 PRB4P10163 310 aaPredicted RBP7.17□□□□□ -1.26
SYNE1-224ENST00000478916 TAL2Q16559 108 aa7.17□□□□□ -1.26
SYNE1-224ENST00000478916 BVES-AS1Q5T3Y7 98 aa7.17□□□□□ -1.26
SYNE1-224ENST00000478916 C15orf53Q8NAA6 179 aa7.17□□□□□ -1.26
SYNE1-224ENST00000478916 CARD19Q96LW7 228 aa7.17□□□□□ -1.26
SYNE1-224ENST00000478916 IGKV1D-8A0A087WSZ0 117 aa7.17□□□□□ -1.26
SYNE1-224ENST00000478916 EFNA2O43921 213 aa7.17□□□□□ -1.26
SYNE1-224ENST00000478916 CRYBA4P53673 196 aa7.17□□□□□ -1.26
SYNE1-224ENST00000478916 C15orf32Q32M92 178 aa7.17□□□□□ -1.26
SYNE1-224ENST00000478916 NMSQ5H8A3 153 aa7.17□□□□□ -1.26
Retrieved 100 of 20,778 RNA–protein pairs in 50.8 ms