RNA–Protein interactions for RNA: ENST00000478746.1

VIM-204, Transcript of vimentin, humanhuman

TSL 2

Gene VIM, Length 757 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-204ENST00000478746 OR1B1Q8NGR6 318 aa11.84□□□□□ -0.51
VIM-204ENST00000478746 C18orf15Q96N68 181 aa11.84□□□□□ -0.51
VIM-204ENST00000478746 PPP1R14DQ9NXH3 145 aa11.84□□□□□ -0.51
VIM-204ENST00000478746 LYRM1O43325 122 aa11.83□□□□□ -0.52
VIM-204ENST00000478746 ADAP1O75689 374 aa11.83□□□□□ -0.52
VIM-204ENST00000478746 CFDP00746 253 aaPredicted RBP11.83□□□□□ -0.52
VIM-204ENST00000478746 FGL1Q08830 312 aa11.83□□□□□ -0.52
VIM-204ENST00000478746 SMCO1Q147U7 214 aa11.83□□□□□ -0.52
VIM-204ENST00000478746 GGNBP1Q5YKI7 109 aa11.83□□□□□ -0.52
VIM-204ENST00000478746 Q6ZRN7 208 aaPredicted RBP11.83□□□□□ -0.52
VIM-204ENST00000478746 ZNF738Q8NE65 137 aa11.83□□□□□ -0.52
VIM-204ENST00000478746 SCGB3A2Q96PL1 93 aa11.83□□□□□ -0.52
VIM-204ENST00000478746 TRAV8-2A0A0B4J237 113 aa11.82□□□□□ -0.52
VIM-204ENST00000478746 PLA2G10O15496 165 aa11.82□□□□□ -0.52
VIM-204ENST00000478746 IFNA5P01569 189 aa11.82□□□□□ -0.52
VIM-204ENST00000478746 SMR3BP02814 79 aaPredicted RBP11.82□□□□□ -0.52
VIM-204ENST00000478746 MZT2BQ6NZ67 158 aa11.82□□□□□ -0.52
VIM-204ENST00000478746 GPR82Q96P67 336 aa11.82□□□□□ -0.52
VIM-204ENST00000478746 PRR13Q9NZ81 148 aa11.82□□□□□ -0.52
VIM-204ENST00000478746 MDFICQ9P1T7 246 aa11.82□□□□□ -0.52
VIM-204ENST00000478746 SLC45A2Q9UMX9 530 aa11.82□□□□□ -0.52
VIM-204ENST00000478746 A0A0B4J2A0 478 aa11.81□□□□□ -0.52
VIM-204ENST00000478746 H3BNG1 76 aa11.81□□□□□ -0.52
VIM-204ENST00000478746 HOXA5P20719 270 aa11.81□□□□□ -0.52
VIM-204ENST00000478746 DEFA1P59665 94 aa11.81□□□□□ -0.52
VIM-204ENST00000478746 DEFA3P59666 94 aa11.81□□□□□ -0.52
VIM-204ENST00000478746 ERVFC1-1P60608 527 aa11.81□□□□□ -0.52
VIM-204ENST00000478746 ASAH1Q13510 395 aa11.81□□□□□ -0.52
VIM-204ENST00000478746 RNASE8Q8TDE3 154 aaKnown RBP11.81□□□□□ -0.52
VIM-204ENST00000478746 TMEM263Q8WUH6 116 aaKnown RBP11.81□□□□□ -0.52
VIM-204ENST00000478746 SLC25A21Q9BQT8 299 aaPredicted RBP11.81□□□□□ -0.52
VIM-204ENST00000478746 SHPKQ9UHJ6 478 aa11.81□□□□□ -0.52
VIM-204ENST00000478746 IGKV1OR2-108A0A075B7D4 117 aa11.8□□□□□ -0.52
VIM-204ENST00000478746 ORM2P19652 201 aa11.8□□□□□ -0.52
VIM-204ENST00000478746 S100A7P31151 101 aa11.8□□□□□ -0.52
VIM-204ENST00000478746 KRTAP10-1P60331 282 aa11.8□□□□□ -0.52
VIM-204ENST00000478746 IFITM3Q01628 133 aa11.8□□□□□ -0.52
VIM-204ENST00000478746 HIST1H1AQ02539 215 aaPredicted RBP11.8□□□□□ -0.52
VIM-204ENST00000478746 LYZL2Q7Z4W2 148 aa11.8□□□□□ -0.52
VIM-204ENST00000478746 THAP8Q8NA92 274 aa11.8□□□□□ -0.52
VIM-204ENST00000478746 OR1S1Q8NH92 325 aa11.8□□□□□ -0.52
VIM-204ENST00000478746 FAM229AH3BQW9 127 aa11.79□□□□□ -0.52
VIM-204ENST00000478746 J3QL48 77 aa11.79□□□□□ -0.52
VIM-204ENST00000478746 RAB11AP62491 216 aa11.79□□□□□ -0.52
VIM-204ENST00000478746 LINC00612Q8N6U2 182 aa11.79□□□□□ -0.52
VIM-204ENST00000478746 OR8A1Q8NGG7 326 aa11.79□□□□□ -0.52
VIM-204ENST00000478746 TMEM147Q9BVK8 224 aa11.79□□□□□ -0.52
VIM-204ENST00000478746 FAM240BA0A1B0GVZ2 78 aa11.78□□□□□ -0.52
VIM-204ENST00000478746 GAGE12BA1L429 117 aa11.78□□□□□ -0.52
VIM-204ENST00000478746 GAGE7O76087 117 aa11.78□□□□□ -0.52
VIM-204ENST00000478746 NDUFB6O95139 128 aa11.78□□□□□ -0.52
VIM-204ENST00000478746 GAGE12FP0CL80 117 aa11.78□□□□□ -0.52
VIM-204ENST00000478746 GAGE12GP0CL81 117 aa11.78□□□□□ -0.52
VIM-204ENST00000478746 GAGE12IP0CL82 117 aa11.78□□□□□ -0.52
VIM-204ENST00000478746 AKR1C4P17516 323 aa11.78□□□□□ -0.52
VIM-204ENST00000478746 BTCP35070 178 aa11.78□□□□□ -0.52
VIM-204ENST00000478746 ICAM4Q14773 271 aa11.78□□□□□ -0.52
VIM-204ENST00000478746 CCDC28AQ8IWP9 274 aa11.78□□□□□ -0.52
VIM-204ENST00000478746 BPIFCQ8NFQ6 507 aa11.78□□□□□ -0.52
VIM-204ENST00000478746 PAIP2BQ9ULR5 123 aaKnown RBP11.78□□□□□ -0.52
VIM-204ENST00000478746 H7BYZ3 331 aa11.77□□□□□ -0.53
VIM-204ENST00000478746 SIVA1O15304 175 aa11.77□□□□□ -0.53
VIM-204ENST00000478746 RLN2P04090 185 aa11.77□□□□□ -0.53
VIM-204ENST00000478746 GATA2P23769 480 aaPredicted RBP11.77□□□□□ -0.53
VIM-204ENST00000478746 CDKN1BP46527 198 aa11.77□□□□□ -0.53
VIM-204ENST00000478746 SRPXP78539 464 aa11.77□□□□□ -0.53
VIM-204ENST00000478746 TMED4Q7Z7H5 227 aa11.77□□□□□ -0.53
VIM-204ENST00000478746 ENKURQ8TC29 256 aa11.77□□□□□ -0.53
VIM-204ENST00000478746 IAPPP10997 89 aa11.76□□□□□ -0.53
VIM-204ENST00000478746 ANXA3P12429 323 aa11.76□□□□□ -0.53
VIM-204ENST00000478746 PSG3Q16557 428 aa11.76□□□□□ -0.53
VIM-204ENST00000478746 TMEM182Q6ZP80 229 aaPredicted RBP11.76□□□□□ -0.53
VIM-204ENST00000478746 TNFRSF18Q9Y5U5 241 aa11.76□□□□□ -0.53
VIM-204ENST00000478746 A0A096LPF7 62 aa11.75□□□□□ -0.53
VIM-204ENST00000478746 PIGBOS1A0A0B4J2F0 54 aa11.75□□□□□ -0.53
VIM-204ENST00000478746 TCRBP04435 133 aa11.75□□□□□ -0.53
VIM-204ENST00000478746 CXCL3P19876 107 aa11.75□□□□□ -0.53
VIM-204ENST00000478746 LRRC20Q8TCA0 184 aa11.75□□□□□ -0.53
VIM-204ENST00000478746 C20orf144Q9BQM9 153 aa11.75□□□□□ -0.53
VIM-204ENST00000478746 SNURFLB1AK76 121 aa11.74□□□□□ -0.53
VIM-204ENST00000478746 PITX3O75364 302 aa11.74□□□□□ -0.53
VIM-204ENST00000478746 PRB4P10163 310 aaPredicted RBP11.74□□□□□ -0.53
VIM-204ENST00000478746 RPL7P18124 248 aaKnown RBP11.74□□□□□ -0.53
VIM-204ENST00000478746 NFE4Q86UQ8 179 aa11.74□□□□□ -0.53
VIM-204ENST00000478746 C20orf85Q9H1P6 137 aa11.74□□□□□ -0.53
VIM-204ENST00000478746 NUDT15Q9NV35 164 aa11.74□□□□□ -0.53
VIM-204ENST00000478746 FLVCR2Q9UPI3 526 aa11.74□□□□□ -0.53
VIM-204ENST00000478746 TRAV6A0A075B6T7 132 aa11.73□□□□□ -0.53
VIM-204ENST00000478746 A0A087WTM6 91 aa11.73□□□□□ -0.53
VIM-204ENST00000478746 DNAH10OSP0CZ25 163 aa11.73□□□□□ -0.53
VIM-204ENST00000478746 GCSHP23434 173 aa11.73□□□□□ -0.53
VIM-204ENST00000478746 TMEM128Q5BJH2 165 aa11.73□□□□□ -0.53
VIM-204ENST00000478746 Q6ZSN1 163 aa11.73□□□□□ -0.53
VIM-204ENST00000478746 NRARPQ7Z6K4 114 aa11.73□□□□□ -0.53
VIM-204ENST00000478746 RPUSD4Q96CM3 377 aaKnown RBP11.73□□□□□ -0.53
VIM-204ENST00000478746 VSIG2Q96IQ7 327 aa11.73□□□□□ -0.53
VIM-204ENST00000478746 TMPRSS5Q9H3S3 457 aa11.73□□□□□ -0.53
VIM-204ENST00000478746 DUXBA0A1W2PPF3 345 aa11.72□□□□□ -0.53
VIM-204ENST00000478746 H3BRN7 92 aa11.72□□□□□ -0.53
VIM-204ENST00000478746 MED6O75586 246 aa11.72□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 29.4 ms