RNA–Protein interactions for RNA: ENST00000474059.1

CCDC88A-212, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 5

Gene CCDC88A, Length 541 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-212ENST00000474059 MSMO1Q15800 293 aa0.58□□□□□ -2.32
CCDC88A-212ENST00000474059 TMEM14EPQ6UXP3 125 aa0.58□□□□□ -2.32
CCDC88A-212ENST00000474059 TEN1Q86WV5 123 aa0.58□□□□□ -2.32
CCDC88A-212ENST00000474059 GKN2Q86XP6 184 aa0.58□□□□□ -2.32
CCDC88A-212ENST00000474059 MALSU1Q96EH3 234 aa0.58□□□□□ -2.32
CCDC88A-212ENST00000474059 HYLS1Q96M11 299 aa0.58□□□□□ -2.32
CCDC88A-212ENST00000474059 HOPXQ9BPY8 73 aaPredicted RBP0.58□□□□□ -2.32
CCDC88A-212ENST00000474059 TMEM70Q9BUB7 260 aa0.58□□□□□ -2.32
CCDC88A-212ENST00000474059 CCDC94Q9BW85 323 aaPredicted RBP0.58□□□□□ -2.32
CCDC88A-212ENST00000474059 CACYBPQ9HB71 228 aaKnown RBP0.58□□□□□ -2.32
CCDC88A-212ENST00000474059 ASB4Q9Y574 426 aa0.58□□□□□ -2.32
CCDC88A-212ENST00000474059 NISCHQ9Y2I1 1504 aa0.58□□□□□ -2.32
CCDC88A-212ENST00000474059 RFX7Q2KHR2 1363 aa0.57□□□□□ -2.32
CCDC88A-212ENST00000474059 F8W1H4 67 aa0.57□□□□□ -2.32
CCDC88A-212ENST00000474059 H3BRM9 83 aa0.57□□□□□ -2.32
CCDC88A-212ENST00000474059 PIAS1O75925 651 aa0.57□□□□□ -2.32
CCDC88A-212ENST00000474059 COX7CP15954 63 aa0.57□□□□□ -2.32
CCDC88A-212ENST00000474059 PPP1R2P41236 205 aa0.57□□□□□ -2.32
CCDC88A-212ENST00000474059 HAGHLQ6PII5 290 aaPredicted RBP0.57□□□□□ -2.32
CCDC88A-212ENST00000474059 ARPINQ7Z6K5 226 aa0.57□□□□□ -2.32
CCDC88A-212ENST00000474059 OR5AS1Q8N127 324 aa0.57□□□□□ -2.32
CCDC88A-212ENST00000474059 ZC2HC1AQ96GY0 325 aa0.57□□□□□ -2.32
CCDC88A-212ENST00000474059 PRRT1Q99946 306 aa0.57□□□□□ -2.32
CCDC88A-212ENST00000474059 OR52A1Q9UKL2 312 aa0.57□□□□□ -2.32
CCDC88A-212ENST00000474059 TNFSF18Q9UNG2 199 aa0.57□□□□□ -2.32
CCDC88A-212ENST00000474059 UFC1Q9Y3C8 167 aa0.57□□□□□ -2.32
CCDC88A-212ENST00000474059 EML5Q05BV3 1969 aa0.57□□□□□ -2.32
CCDC88A-212ENST00000474059 SYNMO15061 1565 aa0.57□□□□□ -2.32
CCDC88A-212ENST00000474059 AHNAKQ09666 5890 aaKnown RBP0.57□□□□□ -2.32
CCDC88A-212ENST00000474059 TRAV27A0A087WT01 109 aa0.56□□□□□ -2.32
CCDC88A-212ENST00000474059 TRAV5A0A0B4J249 113 aa0.56□□□□□ -2.32
CCDC88A-212ENST00000474059 RER1O15258 196 aa0.56□□□□□ -2.32
CCDC88A-212ENST00000474059 HIST1H2BKO60814 126 aa0.56□□□□□ -2.32
CCDC88A-212ENST00000474059 IFNA4P05014 189 aa0.56□□□□□ -2.32
CCDC88A-212ENST00000474059 HIST1H2BJP06899 126 aa0.56□□□□□ -2.32
CCDC88A-212ENST00000474059 G0S2P27469 103 aa0.56□□□□□ -2.32
CCDC88A-212ENST00000474059 GLRXP35754 106 aa0.56□□□□□ -2.32
CCDC88A-212ENST00000474059 FKBP1CQ5VVH2 108 aa0.56□□□□□ -2.32
CCDC88A-212ENST00000474059 C1orf140Q5VVS0 124 aa0.56□□□□□ -2.32
CCDC88A-212ENST00000474059 PPP1R2P3Q6NXS1 205 aa0.56□□□□□ -2.32
CCDC88A-212ENST00000474059 NUP35Q8NFH5 326 aa0.56□□□□□ -2.32
CCDC88A-212ENST00000474059 ZNF431Q8TF32 576 aaPredicted RBP0.56□□□□□ -2.32
CCDC88A-212ENST00000474059 PLEKHB2Q96CS7 222 aa0.56□□□□□ -2.32
CCDC88A-212ENST00000474059 MAP1LC3BQ9GZQ8 125 aa0.56□□□□□ -2.32
CCDC88A-212ENST00000474059 TMEM138Q9NPI0 162 aa0.56□□□□□ -2.32
CCDC88A-212ENST00000474059 GID8Q9NWU2 228 aa0.56□□□□□ -2.32
CCDC88A-212ENST00000474059 PTPRFP10586 1907 aa0.56□□□□□ -2.32
CCDC88A-212ENST00000474059 MYH3P11055 1940 aa0.56□□□□□ -2.32
CCDC88A-212ENST00000474059 IGLV3-32A0A0A0MS00 114 aa0.55□□□□□ -2.32
CCDC88A-212ENST00000474059 hDV103S1A0JD37 113 aa0.55□□□□□ -2.32
CCDC88A-212ENST00000474059 PRB4P10163 310 aaPredicted RBP0.55□□□□□ -2.32
CCDC88A-212ENST00000474059 EIF3IQ13347 325 aaKnown RBP0.55□□□□□ -2.32
CCDC88A-212ENST00000474059 LTC4SQ16873 150 aa0.55□□□□□ -2.32
CCDC88A-212ENST00000474059 LRRC18Q8N456 261 aa0.55□□□□□ -2.32
CCDC88A-212ENST00000474059 RTL8AQ9BWD3 113 aa0.55□□□□□ -2.32
CCDC88A-212ENST00000474059 RNF11Q9Y3C5 154 aa0.55□□□□□ -2.32
CCDC88A-212ENST00000474059 C9orf170A2RU37 121 aa0.54□□□□□ -2.32
CCDC88A-212ENST00000474059 E5RI56 91 aa0.54□□□□□ -2.32
CCDC88A-212ENST00000474059 C5orf67F2Z3F1 127 aa0.54□□□□□ -2.32
CCDC88A-212ENST00000474059 PPYP01298 95 aa0.54□□□□□ -2.32
CCDC88A-212ENST00000474059 IDO1P14902 403 aa0.54□□□□□ -2.32
CCDC88A-212ENST00000474059 RPL35P42766 123 aaKnown RBP0.54□□□□□ -2.32
CCDC88A-212ENST00000474059 GNG10P50151 68 aa0.54□□□□□ -2.32
CCDC88A-212ENST00000474059 CRYBA4P53673 196 aa0.54□□□□□ -2.32
CCDC88A-212ENST00000474059 TCTAP57738 103 aa0.54□□□□□ -2.32
CCDC88A-212ENST00000474059 VBP1P61758 197 aa0.54□□□□□ -2.32
CCDC88A-212ENST00000474059 HBBP68871 147 aa0.54□□□□□ -2.32
CCDC88A-212ENST00000474059 PHF5AQ7RTV0 110 aaKnown RBP0.54□□□□□ -2.32
CCDC88A-212ENST00000474059 STX19Q8N4C7 294 aa0.54□□□□□ -2.32
CCDC88A-212ENST00000474059 OR10AG1Q8NH19 301 aa0.54□□□□□ -2.32
CCDC88A-212ENST00000474059 NEK7Q8TDX7 302 aa0.54□□□□□ -2.32
CCDC88A-212ENST00000474059 PSMF1Q92530 271 aa0.54□□□□□ -2.32
CCDC88A-212ENST00000474059 CARD19Q96LW7 228 aa0.54□□□□□ -2.32
CCDC88A-212ENST00000474059 OR2H1Q9GZK4 316 aa0.54□□□□□ -2.32
CCDC88A-212ENST00000474059 HEATR1Q9H583 2144 aaKnown RBP0.54□□□□□ -2.32
CCDC88A-212ENST00000474059 BIN3Q9NQY0 253 aa0.54□□□□□ -2.32
CCDC88A-212ENST00000474059 FBN2P35556 2912 aa0.53□□□□□ -2.32
CCDC88A-212ENST00000474059 ANKRD31Q8N7Z5 1873 aa0.53□□□□□ -2.32
CCDC88A-212ENST00000474059 GPR31O00270 319 aa0.53□□□□□ -2.32
CCDC88A-212ENST00000474059 CST7O76096 145 aa0.53□□□□□ -2.32
CCDC88A-212ENST00000474059 SERPINB1P30740 379 aa0.53□□□□□ -2.32
CCDC88A-212ENST00000474059 RTL8BQ17RB0 113 aa0.53□□□□□ -2.32
CCDC88A-212ENST00000474059 TRIQKQ629K1 86 aa0.53□□□□□ -2.32
CCDC88A-212ENST00000474059 C3orf33Q6P1S2 294 aa0.53□□□□□ -2.32
CCDC88A-212ENST00000474059 SBSPONQ8IVN8 264 aa0.53□□□□□ -2.32
CCDC88A-212ENST00000474059 FAM24BQ8N5W8 94 aa0.53□□□□□ -2.32
CCDC88A-212ENST00000474059 WFDC10AQ9H1F0 79 aa0.53□□□□□ -2.32
CCDC88A-212ENST00000474059 BOLA2Q9H3K6 86 aa0.53□□□□□ -2.32
CCDC88A-212ENST00000474059 ROCK1Q13464 1354 aa0.53□□□□□ -2.32
CCDC88A-212ENST00000474059 TECPR2O15040 1411 aa0.53□□□□□ -2.32
CCDC88A-212ENST00000474059 ERBINQ96RT1 1412 aa0.53□□□□□ -2.32
CCDC88A-212ENST00000474059 YTHDC2Q9H6S0 1430 aaKnown RBP0.53□□□□□ -2.32
CCDC88A-212ENST00000474059 A0A1W2PPM0 123 aa0.52□□□□□ -2.33
CCDC88A-212ENST00000474059 PPP5D1E7EU14 171 aa0.52□□□□□ -2.33
CCDC88A-212ENST00000474059 JMJD7-PLA2G4BH0Y9G9 81 aa0.52□□□□□ -2.33
CCDC88A-212ENST00000474059 LYRM1O43325 122 aa0.52□□□□□ -2.33
CCDC88A-212ENST00000474059 CIRBPQ14011 172 aaKnown RBP0.52□□□□□ -2.33
CCDC88A-212ENST00000474059 CROCCP2Q86T23 111 aa0.52□□□□□ -2.33
CCDC88A-212ENST00000474059 PRR15Q8IV56 129 aa0.52□□□□□ -2.33
CCDC88A-212ENST00000474059 FAM216BQ8N7L0 139 aa0.52□□□□□ -2.33
Retrieved 100 of 20,778 RNA–protein pairs in 60.3 ms