RNA–Protein interactions for RNA: ENST00000464956.1

USP40-211, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 3

Gene USP40, Length 185 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-211ENST00000464956 FBLL1A6NHQ2 334 aaKnown RBP1.41□□□□□ -2.18
USP40-211ENST00000464956 BBIP1A8MTZ0 92 aa1.41□□□□□ -2.18
USP40-211ENST00000464956 PRAC2D3DTV9 90 aa1.41□□□□□ -2.18
USP40-211ENST00000464956 TMEM262E9PQX1 116 aa1.41□□□□□ -2.18
USP40-211ENST00000464956 J3QLW9 94 aa1.41□□□□□ -2.18
USP40-211ENST00000464956 SLC16A6O15403 523 aa1.41□□□□□ -2.18
USP40-211ENST00000464956 ZSCAN12O43309 604 aa1.41□□□□□ -2.18
USP40-211ENST00000464956 SNNO75324 88 aaPredicted RBP1.41□□□□□ -2.18
USP40-211ENST00000464956 MPDU1O75352 247 aa1.41□□□□□ -2.18
USP40-211ENST00000464956 SLC25A5P05141 298 aaKnown RBP1.41□□□□□ -2.18
USP40-211ENST00000464956 CDK1P06493 297 aa1.41□□□□□ -2.18
USP40-211ENST00000464956 HOXB5P09067 269 aa1.41□□□□□ -2.18
USP40-211ENST00000464956 UBBP0CG47 229 aa1.41□□□□□ -2.18
USP40-211ENST00000464956 SLC25A4P12235 298 aa1.41□□□□□ -2.18
USP40-211ENST00000464956 ZNF19P17023 458 aa1.41□□□□□ -2.18
USP40-211ENST00000464956 GABRB1P18505 474 aa1.41□□□□□ -2.18
USP40-211ENST00000464956 ORM2P19652 201 aa1.41□□□□□ -2.18
USP40-211ENST00000464956 RPL5P46777 297 aaKnown RBP1.41□□□□□ -2.18
USP40-211ENST00000464956 RND2P52198 227 aa1.41□□□□□ -2.18
USP40-211ENST00000464956 ARPC4P59998 168 aa1.41□□□□□ -2.18
USP40-211ENST00000464956 GNG11P61952 73 aa1.41□□□□□ -2.18
USP40-211ENST00000464956 ZNF90Q03938 601 aa1.41□□□□□ -2.18
USP40-211ENST00000464956 OPCMLQ14982 345 aa1.41□□□□□ -2.18
USP40-211ENST00000464956 COQ5Q5HYK3 327 aa1.41□□□□□ -2.18
USP40-211ENST00000464956 CFAP161Q6P656 301 aa1.41□□□□□ -2.18
USP40-211ENST00000464956 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa1.41□□□□□ -2.18
USP40-211ENST00000464956 FAM89BQ8N5H3 189 aa1.41□□□□□ -2.18
USP40-211ENST00000464956 SLC25A29Q8N8R3 303 aa1.41□□□□□ -2.18
USP40-211ENST00000464956 TSPAN14Q8NG11 270 aa1.41□□□□□ -2.18
USP40-211ENST00000464956 OR10G2Q8NGC3 310 aa1.41□□□□□ -2.18
USP40-211ENST00000464956 LRRC20Q8TCA0 184 aa1.41□□□□□ -2.18
USP40-211ENST00000464956 ZNF431Q8TF32 576 aaPredicted RBP1.41□□□□□ -2.18
USP40-211ENST00000464956 TRUB1Q8WWH5 349 aaKnown RBP1.41□□□□□ -2.18
USP40-211ENST00000464956 RPUSD4Q96CM3 377 aaKnown RBP1.41□□□□□ -2.18
USP40-211ENST00000464956 MRPL48Q96GC5 212 aaKnown RBP1.41□□□□□ -2.18
USP40-211ENST00000464956 PYURFQ96I23 114 aa1.41□□□□□ -2.18
USP40-211ENST00000464956 ARHGAP5-AS1Q96IT6 56 aa1.41□□□□□ -2.18
USP40-211ENST00000464956 PGLYRP3Q96LB9 341 aa1.41□□□□□ -2.18
USP40-211ENST00000464956 GPR82Q96P67 336 aa1.41□□□□□ -2.18
USP40-211ENST00000464956 MYCBPQ99417 103 aaPredicted RBP1.41□□□□□ -2.18
USP40-211ENST00000464956 SHANK2-AS3Q9BTD1 123 aa1.41□□□□□ -2.18
USP40-211ENST00000464956 TMEM59Q9BXS4 323 aa1.41□□□□□ -2.18
USP40-211ENST00000464956 PARD6GQ9BYG4 376 aaPredicted RBP1.41□□□□□ -2.18
USP40-211ENST00000464956 KRTAP4-9Q9BYQ8 210 aa1.41□□□□□ -2.18
USP40-211ENST00000464956 C20orf85Q9H1P6 137 aa1.41□□□□□ -2.18
USP40-211ENST00000464956 PRR13Q9NZ81 148 aa1.41□□□□□ -2.18
USP40-211ENST00000464956 MRPL36Q9P0J6 103 aaKnown RBP1.41□□□□□ -2.18
USP40-211ENST00000464956 WARS2Q9UGM6 360 aaKnown RBP1.41□□□□□ -2.18
USP40-211ENST00000464956 SSR3Q9UNL2 185 aa1.41□□□□□ -2.18
USP40-211ENST00000464956 OR2W1Q9Y3N9 320 aa1.41□□□□□ -2.18
USP40-211ENST00000464956 TRAV8-2A0A0B4J237 113 aa1.4□□□□□ -2.19
USP40-211ENST00000464956 DAPL1A0PJW8 107 aa1.4□□□□□ -2.19
USP40-211ENST00000464956 C7orf71A4D174 169 aa1.4□□□□□ -2.19
USP40-211ENST00000464956 A6NN06 94 aa1.4□□□□□ -2.19
USP40-211ENST00000464956 K7EPK0 472 aa1.4□□□□□ -2.19
USP40-211ENST00000464956 PRKYO43930 277 aa1.4□□□□□ -2.19
USP40-211ENST00000464956 CIDEAO60543 219 aa1.4□□□□□ -2.19
USP40-211ENST00000464956 WBP4O75554 376 aaKnown RBP1.4□□□□□ -2.19
USP40-211ENST00000464956 TNFAIP8O95379 198 aa1.4□□□□□ -2.19
USP40-211ENST00000464956 KRASP01116 189 aa1.4□□□□□ -2.19
USP40-211ENST00000464956 HLA-DQB1P01920 261 aa1.4□□□□□ -2.19
USP40-211ENST00000464956 FABP1P07148 127 aa1.4□□□□□ -2.19
USP40-211ENST00000464956 GZMBP10144 247 aa1.4□□□□□ -2.19
USP40-211ENST00000464956 OSMP13725 252 aa1.4□□□□□ -2.19
USP40-211ENST00000464956 NFYAP23511 347 aaPredicted RBP1.4□□□□□ -2.19
USP40-211ENST00000464956 PSMA1P25786 263 aaKnown RBP1.4□□□□□ -2.19
USP40-211ENST00000464956 S100A7P31151 101 aa1.4□□□□□ -2.19
USP40-211ENST00000464956 LYZP61626 148 aa1.4□□□□□ -2.19
USP40-211ENST00000464956 MRPL28Q13084 256 aaKnown RBP1.4□□□□□ -2.19
USP40-211ENST00000464956 EIF4EBP1Q13541 118 aaPredicted RBP1.4□□□□□ -2.19
USP40-211ENST00000464956 MLANAQ16655 118 aa1.4□□□□□ -2.19
USP40-211ENST00000464956 TMEM236Q5W0B7 351 aa1.4□□□□□ -2.19
USP40-211ENST00000464956 TEPPQ6URK8 271 aa1.4□□□□□ -2.19
USP40-211ENST00000464956 SLC35G3Q8N808 338 aa1.4□□□□□ -2.19
USP40-211ENST00000464956 LHFPL5Q8TAF8 219 aa1.4□□□□□ -2.19
USP40-211ENST00000464956 NPIPB3Q92617 1050 aa1.4□□□□□ -2.19
USP40-211ENST00000464956 ODF3Q96PU9 254 aa1.4□□□□□ -2.19
USP40-211ENST00000464956 SPRR2FQ96RM1 72 aa1.4□□□□□ -2.19
USP40-211ENST00000464956 FEVQ99581 238 aa1.4□□□□□ -2.19
USP40-211ENST00000464956 SPXQ9BT56 116 aa1.4□□□□□ -2.19
USP40-211ENST00000464956 SLC25A22Q9H936 323 aa1.4□□□□□ -2.19
USP40-211ENST00000464956 SLC39A9Q9NUM3 307 aa1.4□□□□□ -2.19
USP40-211ENST00000464956 CMTM6Q9NX76 183 aa1.4□□□□□ -2.19
USP40-211ENST00000464956 IGKV2D-26A0A0A0MRZ7 120 aa1.39□□□□□ -2.19
USP40-211ENST00000464956 IGKV1D-13A0A0B4J2D9 117 aa1.39□□□□□ -2.19
USP40-211ENST00000464956 GAGE12JA6NER3 117 aa1.39□□□□□ -2.19
USP40-211ENST00000464956 SNRPGP15A8MWD9 76 aa1.39□□□□□ -2.19
USP40-211ENST00000464956 CTXN2P0C2S0 81 aa1.39□□□□□ -2.19
USP40-211ENST00000464956 IGKV1-13P0DP09 117 aa1.39□□□□□ -2.19
USP40-211ENST00000464956 MGST1P10620 155 aaKnown RBP1.39□□□□□ -2.19
USP40-211ENST00000464956 PGAM2P15259 253 aa1.39□□□□□ -2.19
USP40-211ENST00000464956 CXCL3P19876 107 aa1.39□□□□□ -2.19
USP40-211ENST00000464956 G6PCP35575 357 aa1.39□□□□□ -2.19
USP40-211ENST00000464956 PTTG1IPP53801 180 aa1.39□□□□□ -2.19
USP40-211ENST00000464956 RAB2AP61019 212 aa1.39□□□□□ -2.19
USP40-211ENST00000464956 PKIAP61925 76 aa1.39□□□□□ -2.19
USP40-211ENST00000464956 EFNB1P98172 346 aa1.39□□□□□ -2.19
USP40-211ENST00000464956 PPP1R8Q12972 351 aaKnown RBP1.39□□□□□ -2.19
USP40-211ENST00000464956 GAGE1Q13065 139 aa1.39□□□□□ -2.19
USP40-211ENST00000464956 GAGE2BQ13066 116 aa1.39□□□□□ -2.19
Retrieved 100 of 20,778 RNA–protein pairs in 23.2 ms