RNA–Protein interactions for RNA: ENST00000444040.6

SHQ1-202, Transcript of SHQ1, H/ACA ribonucleoprotein assembly factor, humanhuman

TSL 2

Gene SHQ1, Length 2,844 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHQ1-202ENST00000444040 PDE6HQ13956 83 aa12.54□□□□□ -0.4
SHQ1-202ENST00000444040 SIRPDQ9H106 197 aa12.54□□□□□ -0.4
SHQ1-202ENST00000444040 K7EQM0 130 aa12.53□□□□□ -0.4
SHQ1-202ENST00000444040 M0QZK8 103 aa12.53□□□□□ -0.4
SHQ1-202ENST00000444040 LCN12Q6JVE5 192 aa12.53□□□□□ -0.4
SHQ1-202ENST00000444040 ATRXP46100 2492 aa12.53□□□□□ -0.4
SHQ1-202ENST00000444040 NBASA2RRP1 2371 aa12.53□□□□□ -0.4
SHQ1-202ENST00000444040 LOC102724200A0A096LPH7 203 aaPredicted RBP12.53□□□□□ -0.4
SHQ1-202ENST00000444040 Q56UQ5 140 aa12.53□□□□□ -0.4
SHQ1-202ENST00000444040 IGHV7-81A0A0B4J1V7 117 aa12.52□□□□□ -0.4
SHQ1-202ENST00000444040 SH2D7A6NKC9 451 aaPredicted RBP12.52□□□□□ -0.4
SHQ1-202ENST00000444040 S100A7AQ86SG5 101 aa12.52□□□□□ -0.4
SHQ1-202ENST00000444040 NDFIP1Q9BT67 221 aa12.52□□□□□ -0.4
SHQ1-202ENST00000444040 CSMD1Q96PZ7 3565 aa12.52□□□□□ -0.4
SHQ1-202ENST00000444040 M0QZ24 198 aa12.52□□□□□ -0.41
SHQ1-202ENST00000444040 TCAPO15273 167 aa12.52□□□□□ -0.41
SHQ1-202ENST00000444040 TMEM11P17152 192 aa12.52□□□□□ -0.41
SHQ1-202ENST00000444040 FAM120AOSQ5T036 256 aa12.52□□□□□ -0.41
SHQ1-202ENST00000444040 FAM162BQ5T6X4 162 aa12.52□□□□□ -0.41
SHQ1-202ENST00000444040 THYN1Q9P016 225 aa12.52□□□□□ -0.41
SHQ1-202ENST00000444040 IGLC3P0DOY3 106 aa12.52□□□□□ -0.41
SHQ1-202ENST00000444040 NHLH1Q02575 133 aa12.52□□□□□ -0.41
SHQ1-202ENST00000444040 CHEK1O14757 476 aa12.51□□□□□ -0.41
SHQ1-202ENST00000444040 IGHV3-23P01764 117 aa12.51□□□□□ -0.41
SHQ1-202ENST00000444040 CTSGP08311 255 aa12.51□□□□□ -0.41
SHQ1-202ENST00000444040 BTF3P20290 206 aaKnown RBP12.51□□□□□ -0.41
SHQ1-202ENST00000444040 Q8N9W7 124 aa12.51□□□□□ -0.41
SHQ1-202ENST00000444040 PMCHL1Q16048 86 aa12.51□□□□□ -0.41
SHQ1-202ENST00000444040 CHCHD1Q96BP2 118 aaKnown RBP12.51□□□□□ -0.41
SHQ1-202ENST00000444040 AJUBAQ96IF1 538 aa12.51□□□□□ -0.41
SHQ1-202ENST00000444040 A0A1B0GUT8 65 aa12.5□□□□□ -0.41
SHQ1-202ENST00000444040 ARMS2P0C7Q2 107 aa12.5□□□□□ -0.41
SHQ1-202ENST00000444040 ATOH7Q8N100 152 aa12.5□□□□□ -0.41
SHQ1-202ENST00000444040 AAMDCQ9H7C9 122 aa12.5□□□□□ -0.41
SHQ1-202ENST00000444040 C1RLQ9NZP8 487 aa12.5□□□□□ -0.41
SHQ1-202ENST00000444040 OR2T8A6NH00 312 aa12.5□□□□□ -0.41
SHQ1-202ENST00000444040 MAJINQ3KP22 176 aa12.5□□□□□ -0.41
SHQ1-202ENST00000444040 GATD1Q8NB37 220 aa12.5□□□□□ -0.41
SHQ1-202ENST00000444040 C8orf49Q96NF6 230 aa12.5□□□□□ -0.41
SHQ1-202ENST00000444040 SPATA12Q7Z6I5 190 aa12.49□□□□□ -0.41
SHQ1-202ENST00000444040 UQCR10Q9UDW1 63 aa12.49□□□□□ -0.41
SHQ1-202ENST00000444040 RBM14-RBM4A0A0A0MSL8 147 aaKnown RBP12.49□□□□□ -0.41
SHQ1-202ENST00000444040 IGHV1-24A0A0C4DH33 117 aa12.49□□□□□ -0.41
SHQ1-202ENST00000444040 IGHV2-70DA0A0C4DH43 119 aa12.49□□□□□ -0.41
SHQ1-202ENST00000444040 CLEC5AQ9NY25 188 aa12.49□□□□□ -0.41
SHQ1-202ENST00000444040 LINC00614P0C842 121 aa12.48□□□□□ -0.41
SHQ1-202ENST00000444040 UBE2E1P51965 193 aa12.48□□□□□ -0.41
SHQ1-202ENST00000444040 PSG9Q00887 426 aa12.48□□□□□ -0.41
SHQ1-202ENST00000444040 SERTM2A0A1B0GWG4 89 aa12.47□□□□□ -0.41
SHQ1-202ENST00000444040 CRXO43186 299 aaPredicted RBP12.47□□□□□ -0.41
SHQ1-202ENST00000444040 FAM106CPP0CH98 169 aa12.47□□□□□ -0.41
SHQ1-202ENST00000444040 RPL7P18124 248 aaKnown RBP12.47□□□□□ -0.41
SHQ1-202ENST00000444040 RIGQ13278 110 aa12.47□□□□□ -0.41
SHQ1-202ENST00000444040 TXN2Q99757 166 aa12.47□□□□□ -0.41
SHQ1-202ENST00000444040 SMAD5-AS1Q9Y6J3 95 aa12.47□□□□□ -0.41
SHQ1-202ENST00000444040 RPLP1P05386 114 aaKnown RBP12.47□□□□□ -0.41
SHQ1-202ENST00000444040 COX8CQ7Z4L0 72 aa12.47□□□□□ -0.41
SHQ1-202ENST00000444040 ARL6IP6Q8N6S5 226 aa12.47□□□□□ -0.41
SHQ1-202ENST00000444040 TMEM70Q9BUB7 260 aa12.47□□□□□ -0.41
SHQ1-202ENST00000444040 CSN1S1P47710 185 aa12.47□□□□□ -0.41
SHQ1-202ENST00000444040 EFNA4P52798 201 aa12.47□□□□□ -0.41
SHQ1-202ENST00000444040 LY6DQ14210 128 aa12.47□□□□□ -0.41
SHQ1-202ENST00000444040 KLK9Q2XQG4 91 aa12.47□□□□□ -0.41
SHQ1-202ENST00000444040 KLHDC1Q8N7A1 406 aa12.47□□□□□ -0.41
SHQ1-202ENST00000444040 UBTD1Q9HAC8 227 aa12.47□□□□□ -0.41
SHQ1-202ENST00000444040 KLK9Q9UKQ9 250 aa12.47□□□□□ -0.41
SHQ1-202ENST00000444040 TRAV9-2A0A087WT02 112 aa12.46□□□□□ -0.41
SHQ1-202ENST00000444040 Q6AWC8 147 aa12.46□□□□□ -0.41
SHQ1-202ENST00000444040 LINC00173Q6ZV60 143 aa12.46□□□□□ -0.41
SHQ1-202ENST00000444040 RABAC1Q9UI14 185 aa12.46□□□□□ -0.41
SHQ1-202ENST00000444040 CT45A10P0DMU9 189 aa12.46□□□□□ -0.42
SHQ1-202ENST00000444040 LMO4P61968 165 aa12.46□□□□□ -0.42
SHQ1-202ENST00000444040 DMRTA1Q5VZB9 504 aa12.46□□□□□ -0.42
SHQ1-202ENST00000444040 FAM110DQ8TAY7 271 aaPredicted RBP12.46□□□□□ -0.42
SHQ1-202ENST00000444040 IGKV2-40A0A087WW87 121 aaPredicted RBP12.45□□□□□ -0.42
SHQ1-202ENST00000444040 A0A1B0GW15 77 aa12.45□□□□□ -0.42
SHQ1-202ENST00000444040 IGKV2D-40P01614 121 aaPredicted RBP12.45□□□□□ -0.42
SHQ1-202ENST00000444040 IGHG4P01861 327 aa12.45□□□□□ -0.42
SHQ1-202ENST00000444040 ZNF138P52744 262 aa12.45□□□□□ -0.42
SHQ1-202ENST00000444040 SVEP1Q4LDE5 3571 aa12.45□□□□□ -0.42
SHQ1-202ENST00000444040 COL6A6A6NMZ7 2263 aa12.44□□□□□ -0.42
SHQ1-202ENST00000444040 SCGB2A1O75556 95 aa12.44□□□□□ -0.42
SHQ1-202ENST00000444040 LEPROTL1O95214 131 aa12.44□□□□□ -0.42
SHQ1-202ENST00000444040 SAA4P35542 130 aa12.44□□□□□ -0.42
SHQ1-202ENST00000444040 Q6ZN92 141 aa12.44□□□□□ -0.42
SHQ1-202ENST00000444040 ZNF502Q8TBZ5 544 aa12.44□□□□□ -0.42
SHQ1-202ENST00000444040 SH2D1AO60880 128 aa12.44□□□□□ -0.42
SHQ1-202ENST00000444040 IGLL1P15814 213 aa12.44□□□□□ -0.42
SHQ1-202ENST00000444040 ZNF493Q6ZR52 646 aa12.44□□□□□ -0.42
SHQ1-202ENST00000444040 PRR25Q96S07 402 aa12.44□□□□□ -0.42
SHQ1-202ENST00000444040 TMUB1Q9BVT8 246 aa12.44□□□□□ -0.42
SHQ1-202ENST00000444040 BPESC1Q9GZL8 116 aa12.44□□□□□ -0.42
SHQ1-202ENST00000444040 C20orf202A1L168 122 aa12.43□□□□□ -0.42
SHQ1-202ENST00000444040 SYS1-DBNDD2H3BUS1 97 aa12.43□□□□□ -0.42
SHQ1-202ENST00000444040 ATP6V0E1O15342 81 aa12.43□□□□□ -0.42
SHQ1-202ENST00000444040 BATFQ16520 125 aa12.43□□□□□ -0.42
SHQ1-202ENST00000444040 C15orf32Q32M92 178 aa12.43□□□□□ -0.42
SHQ1-202ENST00000444040 SAPCD1Q5SSQ6 148 aa12.43□□□□□ -0.42
SHQ1-202ENST00000444040 UNQ5815/PRO19632Q6UWF5 114 aa12.43□□□□□ -0.42
SHQ1-202ENST00000444040 ITLN2Q8WWU7 325 aaPredicted RBP12.43□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 30.3 ms