RNA–Protein interactions for RNA: ENST00000441089.1

PTPN4-206, Transcript of protein tyrosine phosphatase, non-receptor type 4, human

TSL 3

Gene PTPN4, Length 671 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PTPN4-206	ENST00000441089	GNPNAT1	Q96EK6	184 aa	Predicted RBP	3.58	□□□□□ -1.84
PTPN4-206	ENST00000441089	USMG5	Q96IX5	58 aa		3.58	□□□□□ -1.84
PTPN4-206	ENST00000441089	CXorf58	Q96LI9	332 aa		3.58	□□□□□ -1.84
PTPN4-206	ENST00000441089	OR5B12	Q96R08	314 aa		3.58	□□□□□ -1.84
PTPN4-206	ENST00000441089	GNB4	Q9HAV0	340 aa		3.58	□□□□□ -1.84
PTPN4-206	ENST00000441089	RPRM	Q9NS64	109 aa		3.58	□□□□□ -1.84
PTPN4-206	ENST00000441089	SLC39A9	Q9NUM3	307 aa		3.58	□□□□□ -1.84
PTPN4-206	ENST00000441089	THYN1	Q9P016	225 aa		3.58	□□□□□ -1.84
PTPN4-206	ENST00000441089	UBQLN2	Q9UHD9	624 aa		3.58	□□□□□ -1.84
PTPN4-206	ENST00000441089	PXMP4	Q9Y6I8	212 aa		3.58	□□□□□ -1.84
PTPN4-206	ENST00000441089	DNAH2	Q9P225	4427 aa		3.57	□□□□□ -1.84
PTPN4-206	ENST00000441089	IGHV3OR16-8	A0A075B7F1	116 aa		3.57	□□□□□ -1.84
PTPN4-206	ENST00000441089	TRBV7-1	A0A0A6YYK4	115 aa		3.57	□□□□□ -1.84
PTPN4-206	ENST00000441089	C17orf112	F2Z3M2	114 aa		3.57	□□□□□ -1.84
PTPN4-206	ENST00000441089		F5H697	171 aa		3.57	□□□□□ -1.84
PTPN4-206	ENST00000441089		I3L521	148 aa		3.57	□□□□□ -1.84
PTPN4-206	ENST00000441089	BMPR1B	O00238	502 aa		3.57	□□□□□ -1.84
PTPN4-206	ENST00000441089	CYB5B	O43169	146 aa		3.57	□□□□□ -1.84
PTPN4-206	ENST00000441089	TGOLN2	O43493	480 aa		3.57	□□□□□ -1.84
PTPN4-206	ENST00000441089	CDK2AP2	O75956	126 aa		3.57	□□□□□ -1.84
PTPN4-206	ENST00000441089	TOMM40	O96008	361 aa		3.57	□□□□□ -1.84
PTPN4-206	ENST00000441089	IFNA7	P01567	189 aa		3.57	□□□□□ -1.84
PTPN4-206	ENST00000441089	LGALS1	P09382	135 aa	Known RBP	3.57	□□□□□ -1.84
PTPN4-206	ENST00000441089	M6PR	P20645	277 aa		3.57	□□□□□ -1.84
PTPN4-206	ENST00000441089	PLP1	P60201	277 aa		3.57	□□□□□ -1.84
PTPN4-206	ENST00000441089	YPEL3	P61236	119 aa	Predicted RBP	3.57	□□□□□ -1.84
PTPN4-206	ENST00000441089	SERF2	P84101	59 aa		3.57	□□□□□ -1.84
PTPN4-206	ENST00000441089	FHL3	Q13643	280 aa		3.57	□□□□□ -1.84
PTPN4-206	ENST00000441089	ODF1	Q14990	250 aa		3.57	□□□□□ -1.84
PTPN4-206	ENST00000441089	USF2	Q15853	346 aa	Predicted RBP	3.57	□□□□□ -1.84
PTPN4-206	ENST00000441089	TMEM41B	Q5BJD5	291 aa		3.57	□□□□□ -1.84
PTPN4-206	ENST00000441089	AKR1C8P	Q5T2L2	129 aa		3.57	□□□□□ -1.84
PTPN4-206	ENST00000441089	FAM122C	Q6P4D5	195 aa		3.57	□□□□□ -1.84
PTPN4-206	ENST00000441089	SPSB3	Q6PJ21	355 aa		3.57	□□□□□ -1.84
PTPN4-206	ENST00000441089		Q6ZRG5	221 aa		3.57	□□□□□ -1.84
PTPN4-206	ENST00000441089	MIR17HG	Q75NE6	70 aa		3.57	□□□□□ -1.84
PTPN4-206	ENST00000441089	OR51G1	Q8NGK1	321 aa		3.57	□□□□□ -1.84
PTPN4-206	ENST00000441089	OR10G4	Q8NGN3	311 aa		3.57	□□□□□ -1.84
PTPN4-206	ENST00000441089	OR10G9	Q8NGN4	311 aa		3.57	□□□□□ -1.84
PTPN4-206	ENST00000441089	OR10G7	Q8NGN6	311 aa		3.57	□□□□□ -1.84
PTPN4-206	ENST00000441089	FAM213B	Q8TBF2	198 aa		3.57	□□□□□ -1.84
PTPN4-206	ENST00000441089	TMEM37	Q8WXS4	190 aa		3.57	□□□□□ -1.84
PTPN4-206	ENST00000441089	DUX3	Q96PT4	197 aa		3.57	□□□□□ -1.84
PTPN4-206	ENST00000441089	UHRF2	Q96PU4	802 aa		3.57	□□□□□ -1.84
PTPN4-206	ENST00000441089	TXN2	Q99757	166 aa		3.57	□□□□□ -1.84
PTPN4-206	ENST00000441089	SLC25A22	Q9H936	323 aa		3.57	□□□□□ -1.84
PTPN4-206	ENST00000441089	SEPSECS	Q9HD40	501 aa	Known RBP	3.57	□□□□□ -1.84
PTPN4-206	ENST00000441089	DOK5	Q9P104	306 aa		3.57	□□□□□ -1.84
PTPN4-206	ENST00000441089	IGHV4OR15-8	A0A075B7B6	117 aa		3.56	□□□□□ -1.84
PTPN4-206	ENST00000441089	TRAV30	A0A087WSZ9	112 aa		3.56	□□□□□ -1.84
PTPN4-206	ENST00000441089		A0A087WW49	117 aa		3.56	□□□□□ -1.84
PTPN4-206	ENST00000441089	TRAV5	A0A0B4J249	113 aa		3.56	□□□□□ -1.84
PTPN4-206	ENST00000441089		A0A0G2JLM5	398 aa		3.56	□□□□□ -1.84
PTPN4-206	ENST00000441089	PRSS29P	A6NIE9	313 aa		3.56	□□□□□ -1.84
PTPN4-206	ENST00000441089	ZNF705E	A8MWA4	302 aa	Predicted RBP	3.56	□□□□□ -1.84
PTPN4-206	ENST00000441089	TEX46	H3BTG2	121 aa		3.56	□□□□□ -1.84
PTPN4-206	ENST00000441089	HMGB3	O15347	200 aa	Known RBP	3.56	□□□□□ -1.84
PTPN4-206	ENST00000441089	NUPL2	O15504	423 aa	Known RBP	3.56	□□□□□ -1.84
PTPN4-206	ENST00000441089	OR2C1	O95371	312 aa		3.56	□□□□□ -1.84
PTPN4-206	ENST00000441089	IL4	P05112	153 aa		3.56	□□□□□ -1.84
PTPN4-206	ENST00000441089	OR5G3	P0C626	314 aa		3.56	□□□□□ -1.84
PTPN4-206	ENST00000441089	RBMY1A1	P0DJD3	496 aa	Known RBP	3.56	□□□□□ -1.84
PTPN4-206	ENST00000441089	RD3L	P0DJH9	198 aa		3.56	□□□□□ -1.84
PTPN4-206	ENST00000441089	EDN2	P20800	178 aa		3.56	□□□□□ -1.84
PTPN4-206	ENST00000441089	ARL3	P36405	182 aa		3.56	□□□□□ -1.84
PTPN4-206	ENST00000441089	CDX1	P47902	265 aa	Predicted RBP	3.56	□□□□□ -1.84
PTPN4-206	ENST00000441089	RAB5C	P51148	216 aa		3.56	□□□□□ -1.84
PTPN4-206	ENST00000441089	FGF8	P55075	233 aa	Predicted RBP	3.56	□□□□□ -1.84
PTPN4-206	ENST00000441089	LYZ	P61626	148 aa		3.56	□□□□□ -1.84
PTPN4-206	ENST00000441089	CCL20	P78556	96 aa		3.56	□□□□□ -1.84
PTPN4-206	ENST00000441089	ZNF616	Q08AN1	781 aa		3.56	□□□□□ -1.84
PTPN4-206	ENST00000441089	RAB31	Q13636	194 aa		3.56	□□□□□ -1.84
PTPN4-206	ENST00000441089	DEFB136	Q30KP8	78 aa		3.56	□□□□□ -1.84
PTPN4-206	ENST00000441089	ACOT6	Q3I5F7	207 aa	Predicted RBP	3.56	□□□□□ -1.84
PTPN4-206	ENST00000441089	CLLU1	Q5K131	121 aa		3.56	□□□□□ -1.84
PTPN4-206	ENST00000441089	LCE1E	Q5T753	118 aa		3.56	□□□□□ -1.84
PTPN4-206	ENST00000441089	PXDC1	Q5TGL8	231 aa		3.56	□□□□□ -1.84
PTPN4-206	ENST00000441089	EIF5AL1	Q6IS14	154 aa	Known RBP	3.56	□□□□□ -1.84
PTPN4-206	ENST00000441089	CEMP1	Q6PRD7	247 aa	Predicted RBP	3.56	□□□□□ -1.84
PTPN4-206	ENST00000441089	TOMM20L	Q6UXN7	152 aa		3.56	□□□□□ -1.84
PTPN4-206	ENST00000441089	UNQ9165/PRO28630	Q6UXU0	137 aa		3.56	□□□□□ -1.84
PTPN4-206	ENST00000441089	ZNF600	Q6ZNG1	722 aa		3.56	□□□□□ -1.84
PTPN4-206	ENST00000441089	ZNF709	Q8N972	641 aa		3.56	□□□□□ -1.84
PTPN4-206	ENST00000441089	OR1B1	Q8NGR6	318 aa		3.56	□□□□□ -1.84
PTPN4-206	ENST00000441089	LYPD6B	Q8NI32	183 aa		3.56	□□□□□ -1.84
PTPN4-206	ENST00000441089	MBD3L1	Q8WWY6	194 aa		3.56	□□□□□ -1.84
PTPN4-206	ENST00000441089	FAM167A-AS1	Q96KT0	104 aa		3.56	□□□□□ -1.84
PTPN4-206	ENST00000441089	UBE2E2	Q96LR5	201 aa		3.56	□□□□□ -1.84
PTPN4-206	ENST00000441089	ATP6V0B	Q99437	205 aa		3.56	□□□□□ -1.84
PTPN4-206	ENST00000441089	MRPL27	Q9P0M9	148 aa	Known RBP	3.56	□□□□□ -1.84
PTPN4-206	ENST00000441089	PEF1	Q9UBV8	284 aa	Known RBP	3.56	□□□□□ -1.84
PTPN4-206	ENST00000441089	PUS1	Q9Y606	427 aa	Known RBP eCLIP	3.56	□□□□□ -1.84
PTPN4-206	ENST00000441089	MYCBP2	O75592	4640 aa		3.56	□□□□□ -1.84
PTPN4-206	ENST00000441089	CTXND1	A0A1B0GTU2	59 aa		3.55	□□□□□ -1.84
PTPN4-206	ENST00000441089		A0A1B0GV50	99 aa		3.55	□□□□□ -1.84
PTPN4-206	ENST00000441089	LINC00862	A6NCI5	91 aa		3.55	□□□□□ -1.84
PTPN4-206	ENST00000441089	UMAD1	C9J7I0	102 aa		3.55	□□□□□ -1.84
PTPN4-206	ENST00000441089		H3BRN7	92 aa		3.55	□□□□□ -1.84
PTPN4-206	ENST00000441089	MRPS12	O15235	138 aa	Known RBP	3.55	□□□□□ -1.84
PTPN4-206	ENST00000441089	ZNF207	O43670	478 aa	Known RBP	3.55	□□□□□ -1.84

Retrieved 100 of 20,778 RNA–protein pairs in 56.4 ms